Advanced characterization of a coffee fermenting tank by multi-distributed wireless sensors: spatial interpolation and phase diagrams.

In coffee processing the fermentation stage is considered one of the critical operations by its impact on the final quality of the product. However, the level of control of the fermentation process on each farm is often not adequate; the use of sensorics for controlling coffee fermentation is not common. The objective of this work is to characterize the fermentation temperature in a fermentation tank by applying spatial interpolation and a new methodology of data analysis based on phase space diagrams of temperature data, collected by means of multi-distributed, low cost and autonomous wireless sensors. A real coffee fermentation was supervised in the Cauca region (Colombia) with a network of 24 semi-passive TurboTag RFID temperature loggers with vacuum plastic cover, submerged directly in the fermenting mass. Temporal evolution and spatial distribution of temperature is described in terms of the phase diagram areas which characterizes the cyclic behaviour of temperature and highlights the significant heterogeneity of thermal conditions at different locations in the tank where the average temperature of the fermentation was 21.2 °C, although there were temperature ranges of 4.6°C, and average spatial standard deviation of ±1.21ºC. In the upper part of the tank we found high heterogeneity of temperatures, the higher temperatures and therefore the higher fermentation rates. While at the bottom, it has been computed an area in the phase diagram practically half of the area occupied by the sensors of the upper tank, therefore this location showed higher temperature homogeneity

Método de análisis diacrónico para la intervención en el alojamiento con criterios ecológicos. El caso de Madrid 1940–2100

Las evidencias del impacto sobre el medio ambiente asociado al funcionamiento de las ciudades hacen que sea urgente proponer medidas que reduzcan este consumo y mejoren la eficiencia del metabolismo urbano. La existencia de límites en la disponibilidad de recursos materiales y energéticos, plantea actualmente un reto importante al ser humano: ¿son posibles otras formas de organización más adecuadas a esta condición de limitación? Para dar respuesta, resulta fundamental conocer cómo interactuarán nuestros sistemas urbanos en un modelo económico de continuo desarrollo, con la población que alojan, y si podrán adaptarse a la capacidad de carga limitada del Planeta, evitando futuras situaciones de colapso anunciadas desde distintos ámbitos científicos. En ese contexto, la tesis formula un método de análisis del alojamiento que, mediante la evaluación a largo plazo, permita proponer medidas de intervención para reducir el consumo de recursos asociado a su funcionamiento. Se parte de un enfoque ecológico para definir el alojamiento como una parte fundamental del sistema urbano, que está compuesto por tres elementos: habitantes, viviendas y recursos naturales; por tanto, para reducir los impactos asociados al alojamiento es necesario tener en cuenta la diferente naturaleza de estos elementos y el carácter dinámico de las relaciones que se producen entre ellos. La Ecología, a través del estudio de los ecosistemas, ha identificado estrategias de supervivencia y adaptación ante los cambios y perturbaciones. La similitud entre los elementos de un ecosistema (población y soporte) y los del alojamiento (habitantes, viviendas y recursos naturales) permite verificar que la aplicación de estas estrategias al alojamiento puede conducir a situaciones más deseables en la relación de los sistemas urbanos con su entorno A partir de esta hipótesis, se propone un método de análisis diacrónico1 o a largo plazo, para conocer la evolución en el tiempo del alojamiento a través de la cuantificación de una serie de indicadores descriptivos de los habitantes, las viviendas y los recursos naturales. La aplicación de este método a un sistema urbano permitiría conocer las características de los elementos del sistema y, para un ámbito temporal de futuro, prever su evolución, identificar escenarios no deseables y proponer medidas de intervención que corrijan anticipadamente estas situaciones y eviten impactos ambientales innecesarios. La validación del método de análisis se realiza mediante la aplicación al caso de Madrid en periodo retrospectivo (de 1940 a 2010) A partir del estudio de la evolución en Madrid de los indicadores seleccionados, se proponen medidas de intervención en el alojamiento basadas en estrategias ecológicas que habrían conducido a una evolución alternativa con un impacto menor sobre el medio ambiente que la situación actual. El método de análisis se aplica con carácter prospectivo definiendo tres escenarios de futuro para Madrid hasta 2100. Para cada uno de ellos se analiza la evolución previsible de los indicadores y se proponen diferentes medidas de intervención que, desde el punto de vista ecológico, conducirían a una situación más adecuada. La tesis concluye en el interés de este método de análisis diacrónico que permite estimar posibilidades en la evolución futura del alojamiento, identificar las necesidades de recursos para responder a las demandas de los habitantes y, desde un enfoque ecológico, definir, cuantificar y evaluar posibles medidas de intervención que reduzcan los impactos ambientales. El método, por tanto, es una herramienta de interés para la toma de decisiones en la intervención en el alojamiento y en la planificación urbana a largo plazo. ABSTRACT Evidence of the impact on the environment associated with the operation of cities make it urgent to propose measures to reduce energy consumption and improve the efficiency of urban metabolism. The limited availability of materials and energy resources currently poses a significant challenge to human beings: are more appropriate forms of organization for this limitation possible? In response, it is essential to know how our urban systems with the population they host will interact in an economic model of continuous development and whether they can adapt to the limited endurance capacity of the planet, thus avoiding future collapse situations which are being announced from different scientific fields. In this context, the thesis puts forward a method of housing analysis that by a long term assessment will enable to propose intervention measures to reduce resource consumption associated with its operation. The thesis is based on an ecological approach to identify housing as a fundamental part of the urban system, which is composed of three elements: inhabitants, homes and natural resources. Therefore, in order to reduce the impacts associated with housing it is necessary to consider the characteristics of these elements and the dynamic nature of the relationships among them. Ecology, through the analysis of ecosystems, has identified strategies for survival and adaptation to changes and disturbances. The similarity between the elements of an ecosystem (population and support) and housing (inhabitants, homes and natural resources) enables to verify that the implementation of these strategies to housing can lead to better situations in the relationship existing between urban systems with their environment. From this hypothesis, a diachronic or long term analysis method is proposed to know the evolution of housing over time through the quantification of a descriptive indicators series of inhabitants, homes and natural resources. The implementation of this method to a urban system would allow better knowledge of the characteristics of these elements and forecast their development, identify undesirable scenarios and propose early intervention measures to correct these situations and avoid unnecessary environmental impacts. The validation of the method of analysis has been proved in the city of Madrid for the years 1940-2010. From the analysis of the evolution of the indicators selected, accommodation intervention measures are proposed based on ecological strategies that would have led to an alternative development having less impact on the environment than that of the current situation. The analysis method is implemented prospectively defining three future scenarios for the city of Madrid until 2100. The likely evolution of the indicators are analyzed for each scenario and various intervention measures that would lead to a better situation from an ecological point of view are proposed. The thesis conclusion states the interest of this diachronic analysis method to estimate potential future developments in the housing field, identify resource requirements to meet the demands of the citizens and, from an ecological approach, define, quantify and assess possible intervention measures to reduce environmental impacts. The method, therefore, is an interesting tool for decision-making process as for the intervention in housing and urban planning in the long term.

A large displacement structural analysis of a pipeline subjected to gravity and buoyancy forces

A nonlinear analysis of an elastic tube subjected to gravity forces and buoyancy pressure is carried out. An update lagrangian formulation is used. The structural analysis efficiency in terms of computer time and accuracy, has been improved when load stiffness matrices have been introduced. In this way the follower forces characteristics such as their intensity and direction changes can be well represented. A sensitivity study of different involved variables on the final deformed pipeline shape is carried out.

Computer analysis and design of concrete shell roofs

This paper is a preliminary version of Chapter 3 of a State-of-the-Art Report by the IASS Working Group 5: Concrete Shell Roofs. The intention of this chapter is to set forth for those who intend to design concrete shell roofs information and advice about the selection, verification and utilization of commercial computer tools for analysis and design tasks.The computer analysis and design steps for a concrete shell roof are described. Advice follows on the aspects to be considered in the application of commercial finite element (FE)computer programs to concrete shell analysis, starting with recommendations on how novices can gain confidence and competence in the use of software. To establish vocabulary and provide background references, brief surveys are presented of, first,element types and formulations for shells and, second, challenges presented by advanced analyses of shells. The final section of the chapter indicates what capabilities to seek in selecting commercial FE software for the analysis and design of concrete shell roofs. Brief concluding remarks summarize advice regarding judicious use of computer analysis in design practice.

A proposal for a Business Framework targeted at emerging business services and applications

Un Service Business Framework consiste en una serie de componentes interrelacionados que permiten la gestión de servicios de negocio a través de su ciclo de vida, desde su creación, descubrimiento y comparación, hasta su monetización (incluyendo un posible reparto de beneficios). De esta manera, el denominado FIWARE Business Framework trata de permitir a los usuarios de la plataforma FIWARE mejorar sus productos con funcionalidades de búsqueda, describrimiento, comparación, monetización y reparto de beneficios. Para lograr este objetivo, el Business Framework de FIWARE proporciona la especificación abierta y las APIs de una serie de components (denominados \Generic Enablers" en terminología FIWARE), junto con una implementación de referencia de las mismas pueden ser facilmente integradas en los sitemas existentes para conseguir aplicaciones con valor a~nadido. Al comienzo de este trabajo de fin de master, el Business Framework de FIWARE no era lo suficientemente maduro como para cubrir los requisitos de sus usuarios, ya que ofrecía modelos demasiado generales y dejaba algunas funcionalidades clave para ser implementadas por los usuarios. Para solucionar estos problemas, el principal objectivo desarrollado en el contexto de este trabajo de fin de master ha consistido en mejorar y evolucionar el Business Framework de FIWARE para dar respuesta a las demandas de sus usuarios. Para alcanzar el pricipal objetivo propuesto, el Business Framework de FIWARE ha sido evaluado usando la información proporcionada por los usuarios de la plataforma, principalmente PyMEs y start-ups que usan este framework en sus soluciones, con el objetivo de obtener una lista de requisitos y de dise~nar a partir de éstos un roadmap de evolución a 6 meses. Después, los diferentes problemas identificados se han tratado uno por uno dando en cada caso una solución capaz de cubrir los requisitos de los usuarios. Finalmente, se han evaluado los resultados obtenidos en el proyecto integrando el Business Framework desarrollado con un sistema existente para la gestión de datos de consusmo energético, construyendo lo que se ha denominado Mercado de Datos de Consumo Energético. Esto además ha permitido demostrar la utilidad del framework propuesto para evolucionar una plataforma de datos abiertos bien conocida como es CKAN a un verdadero mercado de datos.---ABSTRACT---Service Business Frameworks consist on a number of interrelated components that support the management of business services across their whole lifecycle, from their creation, publication, discovery and comparison, to their monetization (possibly including revenue settlement and sharing). In this regard, the FIWARE Business Framework aims at allowing FIWARE users to enhance their solutions with search, discovery, comparison, monetization and revenue settlement and sharing features. To achieve this objective, the FIWARE Business Framework provides the open specification and APIs of a comprehensive set of components (called Generic Enablers in FIWARE terminology), along with a reference implementation of these APIs,, that can be easily integrated with existing systems in order to create value added applications. At the beginning of the current Master's Thesis, the FIWARE Business Framework was not mature enough to cover the requirements of the its users, since it provided too general models and leaved some key functionality to be implemented by those users. To deal with these issues, the main objective carried out in the context of this Master's Thesis have been enhancing and evolving the FIWARE Business Framework to accomplish with the demands of its users. For achieving the main objective of this Master's Thesis, the FWARE Business Framework has been evaluated using the feedback provided by FIWARE users, mainly SMEs and start-ups, actually using the framework in their solutions, in order to determine a list of requirements and to design a roadmap for the evolution and improvement of the existing framework in the next 6 months. Then, the diferent issues detected have been tackle one by one enhancing them, and trying to give a solution able to cover users requirements. Finally, the results of the project have been evaluated by integrating the evolved FIWARE Business Framework with an existing system in charge of the management of energy consumption data, building what has been called the Energy Consumption Data Market. This has also allowed demonstrating the usefulness of the proposed business framework to evolve CKAN, a renowned open data platform, into an actual, fully- edged data market.

Negative density dependence and environmental heterogeneity effects on tree ferns across succession in a tropical montane forest.

Although tree ferns are an important component of temperate and tropical forests, very little is known about their ecology. Their peculiar biology (e.g., dispersal by spores and two-phase life cycle) makes it difficult to extrapolate current knowledge on the ecology of other tree species to tree ferns. In this paper, we studied the effects of negative density dependence (NDD) and environmental heterogeneity on populations of two abundant tree fern species, Cyathea caracasana and Alsophila engelii, and how these effects change across a successional gradient. Species patterns harbor information on processes such as competition that can be easily revealed using point pattern analysis techniques. However, its detection may be difficult due to the confounded effects of habitat heterogeneity. Here, we mapped three forest plots along a successional gradient in the montane forests of Southern Ecuador. We employed homogeneous and inhomogeneous K and pair correlation functions to quantify the change in the spatial pattern of different size classes and a case-control design to study associations between juvenile and adult tree ferns. Using spatial estimates of the biomass of four functional tree types (short- and long-lived pioneer, shade- and partial shade-tolerant) as covariates, we fitted heterogeneous Poisson models to the point pattern of juvenile and adult tree ferns and explored the existence of habitat dependencies on these patterns. Our study revealed NDD effects for C. caracasana and strong environmental filtering underlying the pattern of A. engelii. We found that adult and juvenile populations of both species responded differently to habitat heterogeneity and in most cases this heterogeneity was associated with the spatial distribution of biomass of the four functional tree types. These findings show the effectiveness of factoring out environmental heterogeneity to avoid confounding factors when studying NDD and demonstrate the usefulness of covariate maps derived from mapped communities.

Inorganic Photovoltaics - Planar and Nanostructured Devices

Since its invention in the 1950s, semiconductor solar cell technology has evolved in great leaps and bounds. Solar power is now being considered as a serious leading contender for replacing fossil fuel based power generation. This article reviews the evolution and current state, and potential areas of near future research focus, of leading inorganic materials based solar cells, including bulk crystalline, amorphous thin-films, and nanomaterials based solar cells. Bulk crystalline silicon solar cells continue to dominate the solar power market, and continued efforts at device fabrication improvements, and device topology advancements are discussed. III-V compound semiconductor materials on c-Si for solar power generation are also reviewed. Developments in thin-film based solar cells are reviewed, with a focus on amorphous silicon, copper zinc tin sulfide, cadmium telluride, as well as nanostructured Cadmium telluride. Recent developments in the use of nano-materials for solar power generation, including silicon and gallium arsenide nanowires, are also reviewed.

Dan Kiley en la casa Miller

El propósito de esta tesis es estudiar los aspectos fundamentales de la obra del paisajista norteamericano Dan Kiley a través del ejemplo de la casa Miller en Columbus, Indiana. A la hora de abordar el estudio se ha tratado por una parte de estudiar y explicar cuánto hay de relevante en esta obra, pero también de situarla en su contexto. Éste es, además, múltiple: el de la obra, de su autor, el del lugar en que se encuentra y el del momento cultural e histórico en que se produce. En el caso de la casa Miller, la autoría es compartida, y el resultado final, como ocurre en muchos casos de viviendas unifamiliares, responde a un carácter coral, en el que los protagonistas son varios, con mayor o menor influencia, pero indispensables todos ellos en la visión final de conjunto. El primero de los aspectos a considerar son los antecedentes que la han hecho posible ya que el entorno que conforma el universo de Dan Kiley hasta llegar a Columbus es fundamental para entender las circunstancias de partida de una obra como la casa Miller: sus años previos a la universidad, su particular relación con el paisaje a través de sus diferentes trabajos, su extenso conocimiento de las especies de plantas y la experiencia acumulada trabajando para Warren Manning, como la formación basada en la enseñanza, herencia de Olsmted y de las Bellas Artes. Después, sus compañeros de Harvard Eckbo y Rose, la influencia dentro de la universidad tanto de Walter Gropius como de los paisajistas Thomas Church o Christopher Tunnard y de los jardines realizados en Europa durante las primeras décadas del siglo XX conocidos a través de las publicaciones y de la arquitectura de Mies van der Rohe. Años más tarde, después de haber abandonado Harvard, la decisiva influencia de Eero Saarinen y también la de sus relaciones con los diversos colaboradores, los primeros viajes a Europa y con ello la posibilidad de visitar las grandes obras de Le Nôtre. Por otro lado, y en paralelo, la biografía de Irwin Miller, propietario de la casa, nos lleva hasta el momento en el que se ponen en contacto las tres figuras clave para el inicio de las obras (Miller, Saarinen y Kiley) terminando de situar a la casa Miller en el contexto biográfico de su creación. El análisis del lugar, una ciudad tan especial como Columbus, nos remite continuamente a la figura de Irwin Miller, manteniendo siempre una relación indisoluble entre este singular patrono y su ciudad, materializada en la creación del Architecture Program. La primera parte del trabajo aborda estos temas, alternando entre una figura y otra, aunque todas las partes se encuentran ligadas entre sí. En la segunda parte de la tesis se analiza en profundidad primero la casa Miller y después con una mayor precisión los jardines: su esquema compositivo general, sus tres partes diferenciadas y dentro de ellas las sucesivas subpartes que las componen. El análisis se estructura en tres fases: una primera descriptiva del desarrollo del proyecto hasta su materialización en la obra, la siguiente que analiza lo realmente ejecutado y por último los cambios sufridos a lo largo del tiempo. En cuanto al análisis propio de la casa y los jardines, la información de los planos, así como de las fotografías familiares, junto con las imágenes más oficiales de la casa pertenecientes a Ezra Stoller y Balthazar Korab, permitirá conocer los cambios producidos a lo largo del tiempo debidos a diversos factores, como el cambio de criterio en cuanto al uso o decisiones personales del matrimonio Miller: sustitución de plantas y árboles, desaparición de elementos curiosos como las cascadas del techo de uno de los porches, o aparición de elementos singulares que formaran parte de las visiones ya clásicas de la casa, como la escultura de Henry Moore. La tercera parte de la tesis describe la influencia de los jardines de Le Nôtre en el jardín de la casa Miller, gracias a la utilización y adaptación de numerosos recursos del jardín barroco francés, y se configura, junto con el análisis de las obras de jardín doméstico más significativas de Kiley en su obra posterior a la Miller, como el análisis final de todo el trabajo. La utilización de estos instrumentos depurados bajo una estética formal propia del movimiento moderno tiene una singularidad única en los jardines de la Miller, y a pesar de que a lo largo de su carrera Dan Kiley convirtió esta utilización en una constante, no logró la armonía demostrada en esta residencia de Columbus en ninguno de los jardines posteriores en cuanto a forma, escala, relación entre las partes, respuesta a las necesidades de uso y de evolución a lo largo del tiempo. ABSTRACT The purpose of this thesis is to study the fundamental aspects of the work of the american landscape architect Dan Kiley through the example of the Miller House in Columbus, Indiana. When addressing the study it was treated on the one hand to study and explain how much is relevant in this work, but also put it into context. This is also multiple: the work, its author, the place where it lands and the cultural and historical context in which it occurs. In the case of the Miller house, the authorship is shared, and the end result, as in many cases houses, responds to a coral nature, in which the protagonists are several, with more or less influence on it, but indispensable all of them in the final overview. The first aspect to be considered are the antecedents that made it possible, because the environment which forms the universe of Dan Kiley to reach Columbus is essential to understand the circumstances of departure for a work like the Miller house: his previous years of college, his particular relationship with the landscape through his different jobs, his extensive knowledge of species of plants and the accumulated experience working for Warren Manning, and also the training based on Olmsted and Beaux Arts heritage . After that, his Harvard fellows Eckbo and Rose, the influence from Walter Gropius Thomas Church and Christopher Tunnard within the university, and also the landscape and garden made in Europe during the first decades of the twentieth century known through publications and the architecture of Mies van der Rohe. Years later, after leaving Harvard , the decisive influence of Eero Saarinen and also his relationships with various partners, the first trips to Europe and therefore the opportunity to visit the great works of Le Nôtre. On the other hand, and in parallel, Irwin Miller´s biography, owner of the house, takes us to the time when the three key figures come into contact to the start the construction (Miller, Saarinen and Kiley) putting the Miller house into the biographical context of its creation. The analysis of the place, a very special city like Columbus, continually refers us to Irwin Miller´s figure while maintaining an indissoluble relationship between employer and this unique city, materialized in the creation of the Architecture Program. The first part of the work deals with these issues, alternating between one figure and another, although all parties are linked. The second part of the thesis analyzes in depth Miller´s house and then with greater precision the gardens: its overall compositional scheme, its three distinct parts and within them the successive subparts that compose the garden The analysis is divided into three phases: the first one is focused in the project development to its materialization in the final work, the second one which analyzes what is really executed and finally the changes undergone over time. As for the own analysis of the house and gardens, the information drawings, as well as family photographs, along with the official pictures of the house belonging to Ezra Stoller and Balthazar Korab, will reveal the changes throughout time due to various factors, as the change in criterion for the use, or Miller´s marriage personal decisions: replacement of plants and trees, disappearance of curious elements like waterfalls roof of one of the porches, or appearance of single elements that now have become part of the classic visions of the house, like the sculpture of Henry Moore. The third part of the thesis describes the influence of the gardens of Le Nôtre in the garden of Miller´s house, through the use and adaptation of numerous resources from the French Baroque garden, and it is configured as the final analysis of of the work, also with the description of Kiley´s most significant post-Miller one family housing gardens. The use of these released under its own formal aesthetics of modernism instruments has a unique singularity in the gardens of the Miller´s , and although Dan Kiley turned this use in a constant throughout his career, he never got to the harmony demonstrated in Columbus residence in any of the later gardens in form, scale, relationship between the parties, responding to the needs of use and evolution over time.

Estratos arquitectónicos : conceptos, lógicas, sinopsis

La presente tesis doctoral se centra en la investigación del "estrato arquitectónico", manejando conceptos, lógicas y sinopsis como puntos organizativos, enlazados y superpuestos, que den paso a un marco propositivo que pueda ser simultáneamente articulado e independiente. Una situación que, ante nuevos desafíos, pretende ir más allá de una estricta definición de estrato o de su noción preconcebida descrita desde la superposición de diversos materiales. Todo ello a fin de revelar los diferentes perfiles del estrato y de la estratificación. Para ello, se abre y amplía el campo de estudio proyectual/procesual desdibujando los límites entre disciplinas –geología, filosofía, tecnología, arquitectura–. Y al mismo tiempo, se construye una cartografía del estrato arquitectónico asociada: a una taxonomía descriptora, a nuevas formulaciones, a pensamientos de personajes reconocibles y/o rescatados –como Rowe/Slutzky, Smithson, Parent/Virilio, Koolhaas, MVRDV, etc.–, y, por último, a nuevas lógicas proyectuales y operativas referidas al estrato, que fusionan conocimientos complejos. Unos contenidos que habitualmente no se presentan en investigaciones doctorales tradicionales –lo que permite afrontar nuevos cambios metodológicos, e imprimir un punto de partida para el desarrollo de futuras investigaciones o de otros posibles caminos emergentes–. Así, el discurso se impregna de nuevos referentes teóricos dentro de una misma mitología común (la del estrato). Un tema abordado con claves híbridas, es decir, con estudios selectivos y escritos coleccionados –analizados a partir de antecedentes encontrados y consolidados–, combinados con interpretaciones subyacentes en la arquitectura contemporánea –que pueden todavía encontrarse en fase experimental–. Una investigación que muestra la adaptación, la evolución y el cambio de la definición de "estrato arquitectónico", así como de su apariencia, utilización y aplicación a lo largo del tiempo, consecuencia de las nuevas necesidades y/o de las nuevas bases ideológicas ocasionadas por nuevos descubrimientos. Estratos arquitectónicos que dotan al espacio de profundidad –desde la bidimensionalidad– mediante la superposición de planos paralelos hacia la construcción de una nueva experiencia de estratificación fenomenológica. Estratos que generan estímulos y cambian su materialidad –de opacos a (en)tramados– creando apariencias y produciendo diversos efectos, para posteriormente exfoliarse y convertirse en estratos habitables. Estratos capturadores del espacio-tiempo, o de las dinámicas internas. Llegando incluso, con un último giro, a la era digital, donde el estrato informacional –que continua siendo independiente, autónomo y diverso, y que puede ser modificado, manipulado, suprimido o activable sin alterar el conjunto–, propicia obtener sistemas flexibles, relacionales, capaces de mutar o adaptarse, asociados a distintos niveles de organización dispositiva, que impulsan acciones y hacen emerger lógicas proyectuales. Estratos que surgen de forma elaborada o espontánea en el territorio urbano o natural (ciudad sobre ciudad, suelo sobre suelo), que se aplican extendiendo e hibridando el territorio (paisajes operativos), que son replanteados artificialmente como mecanismos edificatorios según las exigencias existentes (estratos programáticos, capas especializadas), y que se implantan como capas/layers en los programas informáticos utilizados como herramientas de diseño (multicapas, sistemas de intercambio informacional). Un trabajo que se estructura de manera multicapa lo que permite recorrer la tesis como un mapa de secuencias, saltar entre estratos de información, o seleccionar lecturas según intereses de pensamiento o acción arquitectónica. En consecuencia, una investigación sobre el "estrato arquitectónico" que conecta diversas disciplinas, que recopila distintos posicionamientos teórico/prácticos –lo que implica la introducción de parámetros y datos vivos–, y afronta un posicionamiento estratégico que vuelve a poner en valor el estrato arquitectónico –partiendo de estrategias formales que se han transformado en estrategias experimentales/operativas (a medida que el entorno se ha ido complejizando), siguiendo una estrategia conceptual e intelectual contemporánea, propia y específica–. ABSTRACT This PhD thesis is based on the research of "architectural stratum" using concepts, logical and synopsis as organizational, linked and overlapping points, which give way to a proactive framework that can be articulated and independent simultaneously. A situation that, faced with new challenges, aims to go beyond a strict definition of stratum or their preconceived notion described from the superposition of different materials. All this in order to reveal the different profiles of stratum and stratification. To do this, it opens and widens the field of project/process study, blurring the boundaries between disciplines –geology, philosophy, technology, architecture–. And, at the same time, a cartography of the architectural stratum is constructed, that associates with: descriptor taxonomy, new formulations, thoughts of recognizable and/or rescued characters, –as Rowe/Slutzky, Smithson, Parent/Virilio, Koolhaas, MVRDV, etc.–, and finally, a new project and operational logics referred to stratum, which merge complex knowledge. A content not usually presented in traditional doctoral research –which can face new methodological changes, and creates a starting point for future research or other possible emerging paths–. Thus, the work is imbued with new theoretical framework within a common mythology (stratum’s myth). An issue addressed with hybrid keys, that is, with selective studies and collected writings –analyzed starting from found and consolidated backgrounds–, combined with underlying performances on contemporary architecture –which can still be in experimental phase–. A research that shows adaptation, evolution and change of the definition of "architectural stratum", as well as their appearance, use and application throughout time, result of the new requirements and/or the new ideological foundations caused by new discoveries. Architectural strata that give depth to space –from two-dimensionality– by overlapping parallel planes towards the construction of a new experience of phenomenological stratification. Strata that generate stimuli and change their materiality –from opaque to lattice– creating appearances and producing various effects, for later exfoliating and becoming habitable strata. Strata that capture space-time or internal dynamics. Even reaching, with a final twist, the digital age, where the informational stratum –which remains independent, autonomous and diverse, and can be modified, manipulated, deleted or activated without altering the whole–, contribute to obtaining flexible, relational systems, able to mutate or adapt, associated with different levels of regulatory organization, that drive actions and make emerge project logics. Strata that arise elaborately or spontaneously in urban or natural territory (city upon city, floor upon floor), which apply expanding and hybridizing the territory (operational landscapes), which are artificially restated as building mechanisms according to existing requirements (strata program, specialized layers), which are implemented as layers in the software used as design tools (multilayer, systems of informational interchange). A work that is structured in a multi-layered way, which allows explore the thesis as a sequence map, jump between layers of information, or select readings according to an interest in thought or architectural action. Therefore, an investigation into the "architectural stratum" that connects different disciplines, which collects different theoretical/practical positions –which implies the introduction of live parameters and data– and faces a strategic positioning returning to value the architectural stratum –based on formal strategies that have become experimental/operational strategies (as the environment has become more complex), following a conceptual, intellectual, contemporary, own specific strategy–.

Diversification, expression, and γδ T cell recognition of evolutionarily distant members of the MIC family of major histocompatibility complex class I-related molecules

Distant relatives of major histocompatibility complex (MHC) class I molecules, human MICA and MICB, function as stress-induced antigens that are broadly recognized by intestinal epithelial γδ T cells. They may thus play a central role in the immune surveillance of damaged, infected, or otherwise stressed intestinal epithelial cells. However, the generality of this system in evolution and the mode of recognition of MICA and MICB are undefined. Analysis of cDNA sequences from various primate species defined translation products that are homologous to MICA and MICB. All of the MIC polypeptides have common characteristics, although they are extraordinarily diverse. The most notable alterations are several deletions and frequent amino acid substitutions in the putative α-helical regions of the α1α2 domains. However, the primate MIC molecules were expressed on the surfaces of normal and transfected cells. Moreover, despite their sharing of relatively few identical amino acids in potentially accessible regions of their α1α2 domains, they were recognized by diverse human intestinal epithelial γδ T cells that are restricted by MICA and MICB. Thus, MIC molecules represent a family of MHC proteins that are structurally diverse yet appear to be functionally conserved. The promiscuous mode of γδ T cell recognition of these antigens may be explained by their sharing of a single conserved interaction site.

Odor space and olfactory processing: Collective algorithms and neural implementation

Several basic olfactory tasks must be solved by highly olfactory animals, including background suppression, multiple object separation, mixture separation, and source identification. The large number N of classes of olfactory receptor cells—hundreds or thousands—permits the use of computational strategies and algorithms that would not be effective in a stimulus space of low dimension. A model of the patterns of olfactory receptor responses, based on the broad distribution of olfactory thresholds, is constructed. Representing one odor from the viewpoint of another then allows a common description of the most important basic problems and shows how to solve them when N is large. One possible biological implementation of these algorithms uses action potential timing and adaptation as the “hardware” features that are responsible for effective neural computation.

Accelerated evolution as a consequence of transitions to mutualism

Differential rates of nucleotide substitutions among taxa are a common observation in molecular phylogenetic studies, yet links between rates of DNA evolution and traits or behaviors of organisms have proved elusive. Likelihood ratio testing is used here for the first time to evaluate specific hypotheses that account for the induction of shifts in rates of DNA evolution. A molecular phylogenetic investigation of mutualist (lichen-forming fungi and fungi associated with liverworts) and nonmutualist fungi revealed four independent transitions to mutualism. We demonstrate a highly significant association between mutualism and increased rates of nucleotide substitutions in nuclear ribosomal DNA, and we demonstrate that a transition to mutualism preceded the rate acceleration of nuclear ribosomal DNA in these lineages. Our results suggest that the increased rate of evolution after the adoption of a mutualist lifestyle is generalized across the genome of these mutualist fungi.

Novel dimeric interface and electrostatic recognition in bacterial Cu,Zn superoxide dismutase

Eukaryotic Cu,Zn superoxide dismutases (CuZnSODs) are antioxidant enzymes remarkable for their unusually stable β-barrel fold and dimer assembly, diffusion-limited catalysis, and electrostatic guidance of their free radical substrate. Point mutations of CuZnSOD cause the fatal human neurodegenerative disease amyotrophic lateral sclerosis. We determined and analyzed the first crystallographic structure (to our knowledge) for CuZnSOD from a prokaryote, Photobacterium leiognathi, a luminescent symbiont of Leiognathid fish. This structure, exemplifying prokaryotic CuZnSODs, shares the active-site ligand geometry and the topology of the Greek key β-barrel common to the eukaryotic CuZnSODs. However, the β-barrel elements recruited to form the dimer interface, the strategy used to forge the channel for electrostatic recognition of superoxide radical, and the connectivity of the intrasubunit disulfide bond in P. leiognathi CuZnSOD are discrete and strikingly dissimilar from those highly conserved in eukaryotic CuZnSODs. This new CuZnSOD structure broadens our understanding of structural features necessary and sufficient for CuZnSOD activity, highlights a hitherto unrecognized adaptability of the Greek key β-barrel building block in evolution, and reveals that prokaryotic and eukaryotic enzymes diverged from one primordial CuZnSOD and then converged to distinct dimeric enzymes with electrostatic substrate guidance.

Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize

Comparative genetic maps of Papuan Saccharum officinarum L. (2n = 80) and S. robustum (2n = 80) were constructed by using single-dose DNA markers (SDMs). SDM-framework maps of S. officinarum and S. robustum were compared with genetic maps of sorghum and maize by way of anchor restriction fragment length polymorphism probes. The resulting comparisons showed striking colinearity between the sorghum and Saccharum genomes. There were no differences in marker order between S. officinarum and sorghum. Furthermore, there were no alterations in SDM order between S. officinarum and S. robustum. The S. officinarum and S. robustum maps also were compared with the map of the polysomic octoploid S. spontaneum ‘SES 208’ (2n = 64, x = 8), thus permitting relations to homology groups (“chromosomes”) of S. spontaneum to be studied. Investigation of transmission genetics in S. officinarum and S. robustum confirmed preliminary results that showed incomplete polysomy in these species. Because of incomplete polysomy, multiple-dose markers could not be mapped for lack of a genetic model for their segregation. To coalesce S. officinarum and S. robustum linkage groups into homology groups (composed of homologous pairing partners), they were compared with sorghum (2n = 20), which functioned as a synthetic diploid. Groupings suggested by comparative mapping were found to be highly concordant with groupings based on highly polymorphic restriction fragment length polymorphism probes detecting multiple SDMs. The resulting comparative maps serve as bridges to allow information from one Andropogoneae to be used by another, for breeding, ecology, evolution, and molecular biology.

Attenuated T2 relaxation by mutual cancellation of dipole–dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution

Fast transverse relaxation of 1H, 15N, and 13C by dipole-dipole coupling (DD) and chemical shift anisotropy (CSA) modulated by rotational molecular motions has a dominant impact on the size limit for biomacromolecular structures that can be studied by NMR spectroscopy in solution. Transverse relaxation-optimized spectroscopy (TROSY) is an approach for suppression of transverse relaxation in multidimensional NMR experiments, which is based on constructive use of interference between DD coupling and CSA. For example, a TROSY-type two-dimensional 1H,15N-correlation experiment with a uniformly 15N-labeled protein in a DNA complex of molecular mass 17 kDa at a 1H frequency of 750 MHz showed that 15N relaxation during 15N chemical shift evolution and 1HN relaxation during signal acquisition both are significantly reduced by mutual compensation of the DD and CSA interactions. The reduction of the linewidths when compared with a conventional two-dimensional 1H,15N-correlation experiment was 60% and 40%, respectively, and the residual linewidths were 5 Hz for 15N and 15 Hz for 1HN at 4°C. Because the ratio of the DD and CSA relaxation rates is nearly independent of the molecular size, a similar percentagewise reduction of the overall transverse relaxation rates is expected for larger proteins. For a 15N-labeled protein of 150 kDa at 750 MHz and 20°C one predicts residual linewidths of 10 Hz for 15N and 45 Hz for 1HN, and for the corresponding uniformly 15N,2H-labeled protein the residual linewidths are predicted to be smaller than 5 Hz and 15 Hz, respectively. The TROSY principle should benefit a variety of multidimensional solution NMR experiments, especially with future use of yet somewhat higher polarizing magnetic fields than are presently available, and thus largely eliminate one of the key factors that limit work with larger molecules.