Functional activation of p53 induces apoptosis in the absence of MDM2

The p53 tumor suppressor gene product is negatively regulated by the product of its downstream target, mdm2. The mdm2 oncogene abrogates p53 transactivation function. Amplification of mdm2 occurs in 36% of human sarcomas, which often retain p53 in wild type form, suggesting that overexpression of mdm2 in tumors results in p53 inactivation. Thus, the relationship of p53 to mdm2 is important in tumorigenesis. The deletion of mdm2 in the mouse results in embryonic lethality by 5.5 days post coitum. Embryonic lethality of the mdm2 null embryos was overcome by simultaneous loss of the p53 tumor suppressor, which substantiates the importance of the negative regulatory function of MDM2 on p53 function in vivo. These data suggest that the loss of MDM2 function allowed the constitutively active p53 protein to induce either a complete G1 arrest or the p53-dependent apoptotic pathway, resulting in the death of the mdm2−/− embryos.^ The present study examines the hypothesis that the absence of mdm2 induces apoptosis due to p53 activation. Viability of the p53−/−mdm2−/− mice has allowed establishment of mouse embryo fibroblasts (MEFs) and a detailed examination of the properties of these cells. To introduce p53 into this system, and essentially recreate a mdm2 null cell, a temperature sensitive p53 (tsp53) point mutant (A135V) was used, which exhibits a nonfunctional, mutant conformation at 39°C and wild type, functional conformation at 32°C. Infected pools of p53−/− and p53−/−mdm2−/− MEFs with the tsp53 gene were established and single-cell clonal populations expressing tsp53 were selected. Shifting the cells from 39°C to 32°C caused p53−/−mdm2 −/− lines expressing tsp53 to undergo up to 80% apoptosis, which did not occur in the p53−/− lines expressing tsp53 nor the parental lines lacking p53 expression. Furthermore, the amount of p53 present in the clonal population determined the extent of apoptosis. Tsp53 is transcriptionally active in this system, however, it discriminates among different target promoters and does not induce the apoptosis effector targets bax or Fas/Apo1. ^ In summary, this study indicates that the presence or absence of mdm2 is the determining factor for the ability of p53 to trigger apoptosis in this system. The loss of mdm2 promotes p53-dependent apoptosis in MEFs in a cell cycle and dose-dependent manner. p53 is differentially phosphorylated in the presence and absence of mdm2, but does not induce the apoptosis effectors, bax or Fas/ Apo1. ^

Isotope measurements from late Paleocene - early Eocene of 5 cores from Atlantic and Pacific Ocean

High-resolution stable carbon isotope records for upper Paleocene - lower Eocene sections at Ocean Drilling Program Sites 1051 and 690 and Deep Sea Drilling Project Sites 550 and 577 show numerous rapid (40 - 60 kyr duration) negative excursions of up to 1 per mill. We demonstrate that these transient decreases are the expected result of nonlinear insolation forcing of the carbon cycle in the context of a long carbon residence time. The transients occur at maxima in Earth's orbital eccentricity, which result in high-amplitude variations in insolation due to forcing by climatic precession. The construction of accurate orbital chronologies for geologic sections older than ~ 35 Ma relies on identifying a high-fidelity recorder of variations in Earth's orbital eccentricity. We use the carbon isotope records as such a recorder, establishing a robust orbitally tuned chronology for latest Paleocene-earliest Eocene events. Moreover, the transient decreases provide a means of precise correlation among the four sites that is independent of magnetostratigraphic and biostratigraphic data at the <10^5-year scale. While the eccentricity-controlled transient decreases bear some resemblance to the much larger-amplitude carbon isotope excursion (CIE) that marks the Paleocene/Eocene boundary, the latter event is found to occur near a minimum in the ~400-kyr eccentricity cycle. Thus the CIE occurred during a time of minimal variability in insolation, the dominant mechanism for forcing climate change on 104-year scales. We argue that this is inconsistent with mechanisms that rely on a threshold climate event to trigger the Paleocene/Eocene thermal maximum since any threshold would more likely be crossed during a period of high-amplitude climate variations.

Holocene carbon cycle dynamics, links to model files

We are investigating the late Holocene rise in CO2 by performing four experiments with the climate-carbon-cycle model CLIMBER2-LPJ. Apart from the deep sea sediments, important carbon cycle processes considered are carbon uptake or release by the vegetation, carbon uptake by peatlands, and CO 2 release due to shallow water sedimentation of CaCO3. Ice core data of atmospheric CO2 between 8 ka BP and preindustrial climate can only be reproduced if CO2 outgassing due to shallow water sedimentation of CaCO3 is considered. In this case the model displays an increase of nearly 20 ppmv CO2 between 8 ka BP and present day. Model configurations that do not contain this forcing show a slight decrease in atmospheric CO2. We can therefore explain the late Holocene rise in CO2 by invoking natural forcing factors only, and anthropogenic forcing is not required to understand preindustrial CO2 dynamics.

Variabilidad en poblaciones de maíz nativo de la Mixteca Baja Oaxaqueña, México

La diversidad genética poblacional de maíz en México es muy dinámica y depende de factores biológicos, agroecológicos y socio-económicos, y necesidades familiares. En este trabajo se describió y clasificó la variabilidad morfológica de una colección de 60 muestras poblacionales de maíz, colectadas en 44 municipios de la Mixteca Baja Oaxaqueña (846 msnm a 1842 msnm). Las muestras se sembraron y cultivaron durante el ciclo primavera-verano de 2010, en Santo Domingo Tonala, Oaxaca, bajo un diseño de bloques completos al azar con cuatro repeticiones. Se evaluaron 19 caracteres morfológicos de planta, mazorca, grano y espiga (panoja), y se determinaron diferencias significativas entre poblacionales en estos caracteres. Los caracteres altura de planta y mazorca, días a floración masculina y femenina, y número de granos por hilera en la mazorca fueron determinantes para describir la variabilidad morfológica total. La variación morfológica y fenológica de las poblaciones de maíz se asocia con los patrones altitudinales y geográficos de donde proceden. Se determinaron seis grupos fenotípicos significativamente diferentes con características de mazorca, grano y planta semejantes a las descritas para las razas Celaya, Bolita, Pepitilla, Ancho, y ciertos complejos raciales entre Ancho, Mixteco, Celaya y Bolita.

Fenología de los estados vegetativos de mandioca (Manihot esculenta Crantz) en base al tiempo térmico

La mandioca (Manihot esculenta Crantz) constituye la cuarta fuente mundial de calorías en la alimentación humana, es apta para la nutrición animal y para extracción de biocombustible. Este artículo tiene como objetivo evaluar el comportamiento de un modelo de tiempo térmico (TT) para caracterizar las fases fenológicas (FF) de dos cultivares de mandioca en un ciclo de crecimiento de 280 días, cultivados bajo condiciones de campo en Corrientes, Argentina. Las observaciones se realizaron durante las campañas 2007/2008 y 2008/2009. El cálculo del TT se basó en el método residual, la temperatura base fue 16°C. Entre ambos cultivares se observaron diferencias en los grados-día (GD) acumulados para cumplir las FF de expansión de la primera (00-01) y novena hoja (00-02 H9), y en la de engrosamiento de raíces (00-04 ERR), esta última relacionada con el índice de área foliar (IAF). Para completar el ciclo de crecimiento los cultivares Palomita y Amarilla requirieron entre 2027 y 2096 GD, respectivamente. El patrón de crecimiento y desarrollo fenológico de los cultivares de mandioca basado en los GD acumulados, puede utilizarse para caracterizar el progreso del cultivo en el bioambiente de Corrientes.

Stable oxygen isotope record of Neogloboquadrina pachyderma of ODP Sites 177-1091 and 177-1094

Ocean Drilling Program (ODP) cores permit us to extend the study of millennial-scale climate variability beyond the time period that is generally accessible for piston cores (i.e., the last glacial cycle). ODP Leg 177 provided for the first time continuous high sedimentation rate cores along a north-south transect from 41°to 53°S across the main subdivisions of the Southern Ocean (Shipboard Scientific Party, 1999, doi:10.2973/odp.proc.ir.177.101.1999). The main purpose of this drilling was to investigate the Pleistocene and Holocene paleoceanographic history of this region, documented in the sedimentary records. ODP Sites 1094, 1093, 1091, and 1089 accumulated throughout the Pleistocene at rates >10 cm/k.y. and are the most detailed Pleistocene climatic records ever retrieved from the Southern Ocean. These sections provide a unique opportunity to fill an important gap in the knowledge of the paleoclimatic evolution of the high southern latitude regions. The composite sections at each site were generated shipboard using magnetic susceptibility, gamma ray attenuation (GRA) density, and reflectance data to correlate the drill holes and splice together an optimal (complete and undisturbed) record of the sedimentary sequence at each site. A preliminary magnetic polarity stratigraphy was generated on the 'archive' halves of the core sections from each hole, using the shipboard pass-through magnetometer after demagnetization at a single peak alternating field (Shipboard Scientific Party, 1999). During July 1998, we sampled core sections spanning the mid-Pleistocene interval (0.65-1.2 Ma) from Sites 1094, 1093, and 1091 at the ODP Bremen Core Repository and have since then analyzed the stable isotopic ratios of foraminifers in samples from Sites 1094 and 1091. Our goals for these studies are to establish detailed chronology for the mid-Pleistocene Southern Ocean records from Leg 177 using high-resolution stable isotope analyses, and furthermore, to trace the evolution of millennial-scale variability in proxy records from older glacial and interglacial periods characterized by higher-frequency variation. Here, we report on our stratigraphic results to date and describe the laboratory methods employed for sample preparation and stable isotope analysis. Furthermore, we provide tab-delimited text files of the age models.

Biogeochemical investigation of the benthic nitrogen cycle in the Arabian Sea off Pakistan

A pronounced deficit of nitrogen (N) in the oxygen minimum zone (OMZ) of the Arabian Sea suggests the occurrence of heavy N-loss that is commonly attributed to pelagic processes. However, the OMZ water is in direct contact with sediments on three sides of the basin. Contribution from benthic N-loss to the total N-loss in the Arabian Sea remains largely unassessed. In October 2007, we sampled the water column and surface sediments along a transect cross-cutting the Arabian Sea OMZ at the Pakistan continental margin, covering a range of station depths from 360 to 1430 m. Benthic denitrification and anammox rates were determined by using 15N-stable isotope pairing experiments. Intact core incubations showed declining rates of total benthic N-loss with water depth from 0.55 to 0.18 mmol N m**-2 day**-1. While denitrification rates measured in slurry incubations decreased from 2.73 to 1.46 mmol N m**-2 day**-1 with water depth, anammox rates increased from 0.21 to 0.89 mmol N m**-2 day**-1. Hence, the contribution from anammox to total benthic N-loss increased from 7% at 360 m to 40% at 1430 m. This trend is further supported by the quantification of cd1-containing nitrite reductase (nirS), the biomarker functional gene encoding for cytochrome cd1-Nir of microorganisms involved in both N-loss processes. Anammox-like nirS genes within the sediments increased in proportion to total nirS gene copies with water depth. Moreover, phylogenetic analyses of NirS revealed different communities of both denitrifying and anammox bacteria between shallow and deep stations. Together, rate measurement and nirS analyses showed that anammox, determined for the first time in the Arabian Sea sediments, is an important benthic N-loss process at the continental margin off Pakistan, especially in the sediments at deeper water depths. Extrapolation from the measured benthic N-loss to all shelf sediments within the basin suggests that benthic N-loss may be responsible for about half of the overall N-loss in the Arabian Sea.

Plant-wax, alkenone and major element analyses of ODP Site 659 for the Last Glacial cycle and associated coretop data

We present a hydrologic reconstruction of the Sahara-Sahel transition, covering the complete last glacial cycle (130 ka), based on a combination of plant-wax-specific hydrogen (dD) and carbon isotopes (d13C). The dD and d13C signatures of long-chain n-alkanes from ODP Site 659 off NW Africa reveal a significant anti-correlation. Complementary to published pollen data, we infer that this plant-wax signal reflects sensitive responses of the vegetation cover to precipitation changes in the Sahel region, as well as varying contributions from biomes north of the Sahara (C3 domain) by North-East Trade Winds (NETW). During arid phases, especially the northern parts of the Sahel likely experienced crucial water stress, which resulted in a pronounced contraction of the vegetation cover, thus reducing the amount of C4 plant waxes from the region. The increase in NETW strength during dry periods further promoted a more pronounced C3-plant-wax signal derived from the North African C3 plant domain. During humid periods, the C4-dominated Sahelian environments spread northward into the Saharan realm, in association with lower NETW inputs of C3 plant waxes. Arid-humid cycles deduced from plant-wax dD are in accordance with concomitant changes in weathering intensity reflected in varying major element distributions. Environmental shifts are generally linked to periods with large fluctuations in Northern Hemisphere summer insolation. During Marine Isotope Stages 2 and 3, when insolation variability was low, coupling of the hydrologic regime to alkenone-based estimates of NE Atlantic sea-surface temperatures becomes apparent.

An early Eocene carbon cycle perturbation at in the Southern Alps

At least two transient events of extreme global warming occurred superimposed on the long-term latest Paleocene and early Eocene warming trend in the Paleocene-Eocene thermal maximum (PETM) (or ETM1 ~55.5 Ma) and the Elmo (or ETM2 ?53.6 Ma). Other than warmth, the best known PETM is characterized by (1) significant injection of 13C-depleted carbon into the ocean-atmosphere system, (2) deep-sea carbonate dissolution, (3) strong biotic responses, and (4) perturbations of the hydrological cycle. Documentation of the other documented and suspected "hyperthermals" is, as yet, insufficient to assess whether they are similar in nature to the PETM. Here we present and discuss biomagnetostratigraphic data and geochemical records across two lower Eocene successions deposited on a continental margin of the western Tethys: the Farra and Possagno sections in the Venetian pre-Alps. We recognize four negative carbon isotope excursions within chron C24. Three of these shifts correlate to known or suspected hyperthermals: the PETM, the Eocene thermal maximum 2 (~53.6 Ma), and the informally named "X event" (~52.5 Ma). The fourth excursion lies within a reverse subchron and occurred between the latter two. In the Farra section, the X event is marked by a ~0.6 per mil negative carbon isotope excursion and carbonate dissolution. Furthermore, the event exhibits responses among calcareous nannofossils, planktic foraminifera, and dinoflagellates that are similar to, though less intense than, those observed across the PETM. Sedimentological and quantitative micropaleontological data from the Farra section also suggest increased weathering and runoff as well as sea surface eutrophication during this event.

Depth integrated nitrogen fixation from the northern Benguela upwelling system during Maria S. Merain cruise MSM18/5

Nitrogen fixation data from the cruise number MSM18/5 with research vessel "Maria S. Merian" from 22.08.-20.09.2011 (from Walvis Bay to Walvis Bay) in front of Angola and northern Namibia. Samples taken by CTD- rosette sampler from different depths and incubated in glass bottles (535 ml) at light intensities that resemble the in situ light intensities of the sampling depth after 15N2 gas was injected to the sample. After the incubation time of 6 hours, the complete bottle content was filtered onto a pre-combusted Whatman GF/F filter. Filters were frozen, transported to the institute on dry ice and measured in a mass spectrometer for Delta 15N. The principle of the method was described by Montoya et al. (1996) and calculation was done according to their spread sheet. From the data of the single depths, the nitrogen fixation per square meter within the upper 40 m of the water column was calculated. The methods are described in detail in a paper submitted by Wasmund et al. in 2014 to be printed in 2015. Some results are surprisingly below zero. This occurs if the Delta 15N of the blank is higher than the measurement after incubation. It indicates that no nitrogen fixation occurred. Due to natural variability, the variability of the nitrogen fixation data is high. In an overall estimate, also over several cruises, negative and positive values compensate more or less, suggesting that nitrogen fixation is insignificant in the waters in front of northern Namibia and southern Angola.

Nitrogen isotopic composition in South China Sea sediments

The d15N of surface and down-core sediments spanning the last 20-200 kyr from the entire South China Sea (SCS) ranges only from ~3.0 to ~6.5 per mil, with no correlation with discernible paleoclimatic/oceanographic changes. Detailed profiles of the uppermost sediment column, including fluff samples, indicate a minor diagenetic overprint of 0.3-1.2 per mil at the sediment-water interface. The absence of any correlation with reconstructed (glacial-interglacial) changes in primary production, terrigenous input, and/or sea level related basin configuration is attributed to a complete consumption of nitrate during primary production in this marginal basin during at least the last 140,000 years. This, in turn, implies that the d15N of the nitrate used during primary production remained approximately constant during the last climatic cycle. The proposed scenario infers an unchanged nitrogen isotopic composition of the western Pacific subsurface nitrate between glacial and interglacial stages as well as during terminations and thus constrains proposed changes in the oceanic N inventory.

Trace-element geochemistry of tholeiitic basalts from DSDP Hole 55-433C

Hole 433C, a multiple re-entry hole drilled in 1862 meters of water on Suiko Seamount in the central Emperor Seamounts, penetrated 387.5 meters of lava flows overlain by 163.0 meters of sediments. The recovered volcanic rocks consist of three flow units (1-3) of alkalic basalt underlain by more than 105 flows or flow lobes (Flow Units 4-67) of tholeiitic basalt. This study reports trace-element, including rare-earth element (REE), data for 25 samples from 24 of the least altered tholeiitic flows. These data are used to evaluate the origin and evolution of tholeiitic basalts from Suiko Seamount and to evaluate changes in the mantle source between the time when Suiko Seamount formed, 64.7 ± 1.1 m.y. ago (see Dalrymple et al., 1980), and the present day. Stearns (1946), Macdonald and Katsura (1964) and Macdonald (1968) have established that chemically distinct lavas erupt during four eruptive stages of development of a Hawaiian volcano. These stages, from initial to final, are shield-building, caldera-filling, post-caldera, and post-erosional. The lavas of the shield-building stage are tholeiitic basalts, which erupt rapidly and in great volume. The shield-building stage is quickly followed by caldera collapse and by the caldera-filling stage, during which the caldera is filled by tholeiitic and alkalic lavas. During the post-caldera stage, a relatively thin veneer of alkalic basalts and associated differentiated lavas are erupted, sometimes accompanied by minor eruptions of tholeiitic lava. After a period of volcanic quiescence and erosion, lavas of the nephelinitic suite, which include both alkalic basalts and strongly SiO2-undersaturated nephelinitic basalts, may erupt from satellite vents during the post-erosional stage. Many Hawaiian volcanoes develop through all four stages; but individual volcanoes have become extinct before the cycle is complete. We interpret the tholeiitic lavas drilled on Suiko Seamount to have erupted during either the shield-building or the caldera-filling stage, and the overlying alkalic flows to have erupted during either the caldera-filling or the post-caldera stage (see Kirkpatrick et al., 1980).