Reflections on Partial Least Squares Path Modeling

The purpose of the present article is to take stock of a recent exchange in Organizational Research Methods between critics (Rönkkö & Evermann, 2013) and proponents (Henseler et al., 2014) of partial least squares path modeling (PLS-PM). The two target articles were centered around six principal issues, namely whether PLS-PM: (1) can be truly characterized as a technique for structural equation modeling (SEM); (2) is able to correct for measurement error; (3) can be used to validate measurement models; (4) accommodates small sample sizes; (5) is able to provide null hypothesis tests for path coefficients; and (6) can be employed in an exploratory, model-building fashion. We summarize and elaborate further on the key arguments underlying the exchange, drawing from the broader methodological and statistical literature in order to offer additional thoughts concerning the utility of PLS-PM and ways in which the technique might be improved. We conclude with recommendations as to whether and how PLS-PM serves as a viable contender to SEM approaches for estimating and evaluating theoretical models.

Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.

Narcolepsy is a rare sleep disorder with the strongest human leukocyte antigen (HLA) association ever reported. Since the associated HLA-DRB1*1501-DQB1*0602 haplotype is common in the general population (15-25%), it has been suggested that it is almost necessary but not sufficient for developing narcolepsy. To further define the genetic basis of narcolepsy risk, we performed a genome-wide association study (GWAS) in 562 European individuals with narcolepsy (cases) and 702 ethnically matched controls, with independent replication in 370 cases and 495 controls, all heterozygous for DRB1*1501-DQB1*0602. We found association with a protective variant near HLA-DQA2 (rs2858884; P < 3 x 10(-8)). Further analysis revealed that rs2858884 is strongly linked to DRB1*03-DQB1*02 (P < 4 x 10(-43)) and DRB1*1301-DQB1*0603 (P < 3 x 10(-7)). Cases almost never carried a trans DRB1*1301-DQB1*0603 haplotype (odds ratio = 0.02; P < 6 x 10(-14)). This unexpected protective HLA haplotype suggests a virtually causal involvement of the HLA region in narcolepsy susceptibility.

Amyloid-beta aggregates cause alterations of astrocytic metabolic phenotype: impact on neuronal viability.

Amyloid-beta (Abeta) peptides play a key role in the pathogenesis of Alzheimer's disease and exert various toxic effects on neurons; however, relatively little is known about their influence on glial cells. Astrocytes play a pivotal role in brain homeostasis, contributing to the regulation of local energy metabolism and oxidative stress defense, two aspects of importance for neuronal viability and function. In the present study, we explored the effects of Abeta peptides on glucose metabolism in cultured astrocytes. Following Abeta(25-35) exposure, we observed an increase in glucose uptake and its various metabolic fates, i.e., glycolysis (coupled to lactate release), tricarboxylic acid cycle, pentose phosphate pathway, and incorporation into glycogen. Abeta increased hydrogen peroxide production as well as glutathione release into the extracellular space without affecting intracellular glutathione content. A causal link between the effects of Abeta on glucose metabolism and its aggregation and internalization into astrocytes through binding to members of the class A scavenger receptor family could be demonstrated. Using astrocyte-neuron cocultures, we observed that the overall modifications of astrocyte metabolism induced by Abeta impair neuronal viability. The effects of the Abeta(25-35) fragment were reproduced by Abeta(1-42) but not by Abeta(1-40). Finally, the phosphoinositide 3-kinase (PI3-kinase) pathway appears to be crucial in these events since both the changes in glucose utilization and the decrease in neuronal viability are prevented by LY294002, a PI3-kinase inhibitor. This set of observations indicates that Abeta aggregation and internalization into astrocytes profoundly alter their metabolic phenotype with deleterious consequences for neuronal viability.

Hémorragie intra-alvéolaire [Alveolar hemorrhage].

Diffuse alveolar hemorrhage (DAH) is defined by the presence of red blood cells originating from the lung capillaries or venules within the alveoli. The diagnosis is established on clinical features, radiological pattern, and especially bronchoalveolar lavage. Diffuse alveolar hemorrhage may have many immune or non-immune causes. Immune causes of DAH include vasculitides, connective tissue diseases, especially systemic lupus erythematosus, and antiglomerular basement membrane antibody disease (Goodpasture's syndrome). Treatment is both supportive and causal, often based on high dose corticosteroids and immunosuppressive therapy (especially intravenous cyclophosphamide). Plasma exchanges are performed in antiglomerular basement membrane antibody disease and systemic lupus erythematosus, and are considered in systemic vasculitis. Non-immune causes of DAH mainly include heart diseases, coagulation disorders, infections, drug toxicities and idiopathic DAH. Treatment of non-immune DAH is that of its cause. Whatever the cause, DAH is an emergency requiring prompt assessment and early treatment.

A Multi-SNP Locus-Association Method Reveals a Substantial Fraction of the Missing Heritability.

There are many known examples of multiple semi-independent associations at individual loci; such associations might arise either because of true allelic heterogeneity or because of imperfect tagging of an unobserved causal variant. This phenomenon is of great importance in monogenic traits but has not yet been systematically investigated and quantified in complex-trait genome-wide association studies (GWASs). Here, we describe a multi-SNP association method that estimates the effect of loci harboring multiple association signals by using GWAS summary statistics. Applying the method to a large anthropometric GWAS meta-analysis (from the Genetic Investigation of Anthropometric Traits consortium study), we show that for height, body mass index (BMI), and waist-to-hip ratio (WHR), 3%, 2%, and 1%, respectively, of additional phenotypic variance can be explained on top of the previously reported 10% (height), 1.5% (BMI), and 1% (WHR). The method also permitted a substantial increase (by up to 50%) in the number of loci that replicate in a discovery-validation design. Specifically, we identified 74 loci at which the multi-SNP, a linear combination of SNPs, explains significantly more variance than does the best individual SNP. A detailed analysis of multi-SNPs shows that most of the additional variability explained is derived from SNPs that are not in linkage disequilibrium with the lead SNP, suggesting a major contribution of allelic heterogeneity to the missing heritability.

Uric acid and cardio-metabolic risk factors : an epidemiological approach

The role of serum uric acid (SUA) in cardio-metabolic conditions has long been contentious. It is still unclear if SUA is an independent risk factor or marker of cardio-metabolic conditions and most observed associations are not necessarily causal. This study aimed to further understand and explore the causal role of SUA in cardio-metabolic conditions using genetic and non-genetic epidemiological methods in population-based data. In the first part of this study, we found moderate to high heritability estimates for SUA and fractional excretion of urate (FEUA) suggesting the role of genetic factors in the etiology of hyperuricemia. With regards to the role of SUA on inflammatory markers (IMs), a strong positive association of SUA with C-reactive protein (CRP) and a weaker positive association with tumor necrosis factor alpha (TNF-α) and interleukin 6 (IL-6) was observed, which was in part mediated by body mass index (BMI). These findings suggest that SUA may have a role in sterile inflammation. In view of the inconsistency surrounding the causal nature and direction of the relation between SUA and adiposity, we applied a bidirectional Mendelian randomization approach using genetic variants to decipher the association. The finding that elevated SUA is a consequence rather than a cause of adiposity was not totally unexpected and is compatible with the hypothesis that hyperinsulinemia, accompanying obesity, enhances renal proximal tubular reabsorption of uric acid. The fourth part of this study examined the relationship between SUA and blood pressure (BP) in young adults. The association between SUA and BP, significant only in females, was strongly attenuated upon adjustment for BMI. The possibility that BMI lies in the causal pathway may explain the attenuation observed in the associations of SUA with BP and IMs. Finally, a significant hockey-stick shaped association of SUA with social phobia in our data suggests a protective effect of SUA only up to a certain concentration. Although our study findings have shed some light on the uncertainty underlying the pathophysiology of SUA, more compelling evidence using longitudinal designs, randomized controlled trials and the use of robust genetic tools is warranted to increase our understanding of the clinical significance of SUA.

Prevalence and significance of anti-HILA antibodies after liver transplantation : P236

Background: The pathogenic role of anti-HLA antibodies (AHA) after kidney transplantation is well established. However, its significance after liver transplantation remains unclear. The aim of our study was to determine the prevalence and significance of AHA after liver transplantation. Methods: Between January 2007 and November 2007, all liver transplant recipients who were greater than 6 months posttransplantation and followed regularly at our transplant outpatient clinic (n = 95) were screened for AHA. All clinical and electronic records were reviewed. Serum samples were tested using multiplex technology (Luminex). A liver biopsy had been performed in 55 out of the 95 patients based on clinical grounds but no routine protocol biopsies were performed. Immunosuppression was calcineurin inhibitor-based in 90 patients, sirolimus-based in 4 patients and one patient had no anti-rejection therapy (operationally tolerant recipient). Results: The mean time from transplantation to study was 85 months (range 6-248 months). Overall, AHA were found in 23/95 (24.2%) of patients (5 had anti-class I alone, 13 anti-class II alone, and 4 had both anti-class I and II). However, only 4/95 patients (4.2%) had donor-specific antibodies (DSA) (one anti-class I and 3 anti-class II). Twenty-one out of 95 patients (22.1%) had a history of past or current biopsy-proven or radiological biliary complications (chronic rejection, ischemic cholangitis, ischemic type biliary lesions or biliary anastomosis stricture). Among patients with AHA, 4/23 (17,4%) had biliary complications, while it was 17/72 (23.6%) in patients without AHA (NS). Among patients with DSA, 3/4 (75%) had biliary complications (two with biopsy-proven chronic rejection in association with biliary strictures and one with ischemic cholangitis following hepatic artery thrombosis), versus 1/19 (5.3%) patients with AHA but no DSA (p = 0.009), versus 16/72 (22.2%) patients without AHA (p = 0.046). In patients with DSA, immunosuppression was not different than in patients without DSA. Conclusions: We found a 24% AHA prevalence. The presence of DSA, but not of AHA, was significantly associated with an increased incidence of biliary complications including chronic liver allograft rejection. The exact mechanisms and possible causal relationship linking DSA to biliary complications remain to be studied. Larger prospective trials are thus needed to further define the role of AHA and in particular of DSA after liver transplantation.

Toxicidade de extratos vegetais a Scutellonema bradys

O objetivo deste trabalho foi avaliar o efeito nematostático e nematicida de extratos aquosos de bulbilhos de alho (Allium sativum L.), folhas de mandioca (Manihot esculenta Crantz), folhas e sementes de mamão (Carica papaya L.), folhas de hortelã (Mentha piperita L.) e casca de gliricídia (Gliricidia sepium (Jacq.) Steud.) em Scutellonema bradys, agente causal da casca-preta do inhame (Dioscorea cayennensis Lam.). Todos os extratos vegetais inibiram a mobilidade e causaram mortalidade ao fitonematóide. Os extratos de hortelã e de mandioca causaram menos de 45% de mortalidade a S. bradys. As maiores porcentagens de mortalidade são causadas pelos extratos de sementes e folhas do mamoeiro e pelos bulbilhos de alho.

Actitudes y creencias en los estudiantes del Campus de Bellvitge sobre las medidas higiénicas y las precauciones estándar

Introducción: En los últimos años se han producido avances importantes en el campo de la autoprotección ante las infecciones. Por parte de los docentes que imparten temas relacionados con el campo de la autoprotección del personal de salud y la higiene en las diferentes carreras de ciencias de la salud en el Campus de Bellvitge (CB) de la Universitat de Barcelona (UB) se detectó un desconocimiento y/o confusión de materias relacionadas con la seguridad del paciente y de los profesionales. Objetivo: Mejorar la preparación de los estudiantes de Ciencias de la Salud del CB de la UB en relación con las medidas higiénicas básicas. Material y Método: Estudio de campo, causal y comparativo. Se estableció un grupo formado por los profesores implicados en estas materias para unificar criterios y llevar a cabo un análisis de la situación exhaustiva. Se hicieron entrevistas semiestructuradas a dos estudiantes de cada carrera que fueron registradas y transcritas textualmente por el análisis posterior (Atlas/Ti19). Resultados y Discusión: Del análisis de los discursos surgieron cuatro categorías: 1) El aprendizaje; los estudiantes destacan la falta de consenso entre profesores y la enseñanza demasiado teórica. 2) La experiencia laboral; los estudiantes destacan la divergencia entre la teoría y la práctica. 3) Los argumentos personales; los estudiantes relacionan las medidas con situaciones de excepcionalidad (técnicas muy invasivas) está omnipresente el discurso de"no hacer daño al paciente". 4) Las características propias de las diferentes carreras universitarias; hemos registrado percepciones de los riesgos diferentes entre ellas. Conclusiones: La formación en medidas preventivas y de higiene está contemplada en los planes de estudio como una formación puntual y no lineal en las carreras. Los estudiantes la perciben como una formación necesaria dado su grado de inexperiencia, pero que no es necesaria cuando se adquieren ciertas destrezas. Por lo que respeta a los centros de salud como a los hospitales no hay un consenso en la obligatoriedad que todos los profesionales adopten estas medidas a la práctica diaria y algunas veces los criterios entre teoría y práctica son divergentes.

Actitudes y creencias en los estudiantes del Campus de Bellvitge sobre las medidas higiénicas y las precauciones estándar

Introducción: En los últimos años se han producido avances importantes en el campo de la autoprotección ante las infecciones. Por parte de los docentes que imparten temas relacionados con el campo de la autoprotección del personal de salud y la higiene en las diferentes carreras de ciencias de la salud en el Campus de Bellvitge (CB) de la Universitat de Barcelona (UB) se detectó un desconocimiento y/o confusión de materias relacionadas con la seguridad del paciente y de los profesionales. Objetivo: Mejorar la preparación de los estudiantes de Ciencias de la Salud del CB de la UB en relación con las medidas higiénicas básicas. Material y Método: Estudio de campo, causal y comparativo. Se estableció un grupo formado por los profesores implicados en estas materias para unificar criterios y llevar a cabo un análisis de la situación exhaustiva. Se hicieron entrevistas semiestructuradas a dos estudiantes de cada carrera que fueron registradas y transcritas textualmente por el análisis posterior (Atlas/Ti19). Resultados y Discusión: Del análisis de los discursos surgieron cuatro categorías: 1) El aprendizaje; los estudiantes destacan la falta de consenso entre profesores y la enseñanza demasiado teórica. 2) La experiencia laboral; los estudiantes destacan la divergencia entre la teoría y la práctica. 3) Los argumentos personales; los estudiantes relacionan las medidas con situaciones de excepcionalidad (técnicas muy invasivas) está omnipresente el discurso de"no hacer daño al paciente". 4) Las características propias de las diferentes carreras universitarias; hemos registrado percepciones de los riesgos diferentes entre ellas. Conclusiones: La formación en medidas preventivas y de higiene está contemplada en los planes de estudio como una formación puntual y no lineal en las carreras. Los estudiantes la perciben como una formación necesaria dado su grado de inexperiencia, pero que no es necesaria cuando se adquieren ciertas destrezas. Por lo que respeta a los centros de salud como a los hospitales no hay un consenso en la obligatoriedad que todos los profesionales adopten estas medidas a la práctica diaria y algunas veces los criterios entre teoría y práctica son divergentes.

Actitudes y creencias en los estudiantes del Campus de Bellvitge sobre las medidas higiénicas y las precauciones estándar

Introducción: En los últimos años se han producido avances importantes en el campo de la autoprotección ante las infecciones. Por parte de los docentes que imparten temas relacionados con el campo de la autoprotección del personal de salud y la higiene en las diferentes carreras de ciencias de la salud en el Campus de Bellvitge (CB) de la Universitat de Barcelona (UB) se detectó un desconocimiento y/o confusión de materias relacionadas con la seguridad del paciente y de los profesionales. Objetivo: Mejorar la preparación de los estudiantes de Ciencias de la Salud del CB de la UB en relación con las medidas higiénicas básicas. Material y Método: Estudio de campo, causal y comparativo. Se estableció un grupo formado por los profesores implicados en estas materias para unificar criterios y llevar a cabo un análisis de la situación exhaustiva. Se hicieron entrevistas semiestructuradas a dos estudiantes de cada carrera que fueron registradas y transcritas textualmente por el análisis posterior (Atlas/Ti19). Resultados y Discusión: Del análisis de los discursos surgieron cuatro categorías: 1) El aprendizaje; los estudiantes destacan la falta de consenso entre profesores y la enseñanza demasiado teórica. 2) La experiencia laboral; los estudiantes destacan la divergencia entre la teoría y la práctica. 3) Los argumentos personales; los estudiantes relacionan las medidas con situaciones de excepcionalidad (técnicas muy invasivas) está omnipresente el discurso de"no hacer daño al paciente". 4) Las características propias de las diferentes carreras universitarias; hemos registrado percepciones de los riesgos diferentes entre ellas. Conclusiones: La formación en medidas preventivas y de higiene está contemplada en los planes de estudio como una formación puntual y no lineal en las carreras. Los estudiantes la perciben como una formación necesaria dado su grado de inexperiencia, pero que no es necesaria cuando se adquieren ciertas destrezas. Por lo que respeta a los centros de salud como a los hospitales no hay un consenso en la obligatoriedad que todos los profesionales adopten estas medidas a la práctica diaria y algunas veces los criterios entre teoría y práctica son divergentes.

Actitudes y creencias en los estudiantes del Campus de Bellvitge sobre las medidas higiénicas y las precauciones estándar

Introducción: En los últimos años se han producido avances importantes en el campo de la autoprotección ante las infecciones. Por parte de los docentes que imparten temas relacionados con el campo de la autoprotección del personal de salud y la higiene en las diferentes carreras de ciencias de la salud en el Campus de Bellvitge (CB) de la Universitat de Barcelona (UB) se detectó un desconocimiento y/o confusión de materias relacionadas con la seguridad del paciente y de los profesionales. Objetivo: Mejorar la preparación de los estudiantes de Ciencias de la Salud del CB de la UB en relación con las medidas higiénicas básicas. Material y Método: Estudio de campo, causal y comparativo. Se estableció un grupo formado por los profesores implicados en estas materias para unificar criterios y llevar a cabo un análisis de la situación exhaustiva. Se hicieron entrevistas semiestructuradas a dos estudiantes de cada carrera que fueron registradas y transcritas textualmente por el análisis posterior (Atlas/Ti19). Resultados y Discusión: Del análisis de los discursos surgieron cuatro categorías: 1) El aprendizaje; los estudiantes destacan la falta de consenso entre profesores y la enseñanza demasiado teórica. 2) La experiencia laboral; los estudiantes destacan la divergencia entre la teoría y la práctica. 3) Los argumentos personales; los estudiantes relacionan las medidas con situaciones de excepcionalidad (técnicas muy invasivas) está omnipresente el discurso de"no hacer daño al paciente". 4) Las características propias de las diferentes carreras universitarias; hemos registrado percepciones de los riesgos diferentes entre ellas. Conclusiones: La formación en medidas preventivas y de higiene está contemplada en los planes de estudio como una formación puntual y no lineal en las carreras. Los estudiantes la perciben como una formación necesaria dado su grado de inexperiencia, pero que no es necesaria cuando se adquieren ciertas destrezas. Por lo que respeta a los centros de salud como a los hospitales no hay un consenso en la obligatoriedad que todos los profesionales adopten estas medidas a la práctica diaria y algunas veces los criterios entre teoría y práctica son divergentes.

Formulação do fungo Coniothyrium minitans para controle do mofo-branco causado por Sclerotinia sclerotiorum

O fungo Sclerotinia sclerotiorum, agente causal do mofo-branco, tem controle dificultado pela longevidade de seus escleródios no solo. Uma estratégia alternativa de controle é o uso do fungo antagonista Coniothyrium minitans, que parasita os escleródios de S. sclerotiorum e reduz a incidência da doença. O objetivo deste trabalho foi desenvolver uma formulação com C. minitans capaz de controlar o mofo-branco. Para tanto, picnídios deste fungo foram encapsulados com diferentes polímeros (alginato de sódio e pectina cítrica), caulim e substratos naturais (farinha de trigo e celulose). Das combinações obtidas, a formulação que continha 0,5% de alginato, 1,5% de celulose e 5% de caulim apresentou os melhores resultados quanto à viabilidade do fungo e controle da doença. Os grânulos da formulação armazenados a 4ºC apresentaram 100% de viabilidade do fungo. Nos grânulos armazenados a 28ºC, o fungo perdeu capacidade de crescer após os primeiros dois meses. O fungo formulado foi capaz de esporular sobre os grânulos incubados em meio de cultura BDA e no solo, como também foi capaz de reduzir a incidência da doença.

Mining the human phenome using allelic scores that index biological intermediates.

It is common practice in genome-wide association studies (GWAS) to focus on the relationship between disease risk and genetic variants one marker at a time. When relevant genes are identified it is often possible to implicate biological intermediates and pathways likely to be involved in disease aetiology. However, single genetic variants typically explain small amounts of disease risk. Our idea is to construct allelic scores that explain greater proportions of the variance in biological intermediates, and subsequently use these scores to data mine GWAS. To investigate the approach's properties, we indexed three biological intermediates where the results of large GWAS meta-analyses were available: body mass index, C-reactive protein and low density lipoprotein levels. We generated allelic scores in the Avon Longitudinal Study of Parents and Children, and in publicly available data from the first Wellcome Trust Case Control Consortium. We compared the explanatory ability of allelic scores in terms of their capacity to proxy for the intermediate of interest, and the extent to which they associated with disease. We found that allelic scores derived from known variants and allelic scores derived from hundreds of thousands of genetic markers explained significant portions of the variance in biological intermediates of interest, and many of these scores showed expected correlations with disease. Genome-wide allelic scores however tended to lack specificity suggesting that they should be used with caution and perhaps only to proxy biological intermediates for which there are no known individual variants. Power calculations confirm the feasibility of extending our strategy to the analysis of tens of thousands of molecular phenotypes in large genome-wide meta-analyses. We conclude that our method represents a simple way in which potentially tens of thousands of molecular phenotypes could be screened for causal relationships with disease without having to expensively measure these variables in individual disease collections.

The effect of combined antiretroviral therapy on the overall mortality of HIV-infected individuals.

OBJECTIVE: To estimate the effect of combined antiretroviral therapy (cART) on mortality among HIV-infected individuals after appropriate adjustment for time-varying confounding by indication. DESIGN: A collaboration of 12 prospective cohort studies from Europe and the United States (the HIV-CAUSAL Collaboration) that includes 62 760 HIV-infected, therapy-naive individuals followed for an average of 3.3 years. Inverse probability weighting of marginal structural models was used to adjust for measured confounding by indication. RESULTS: Two thousand and thirty-nine individuals died during the follow-up. The mortality hazard ratio was 0.48 (95% confidence interval 0.41-0.57) for cART initiation versus no initiation. In analyses stratified by CD4 cell count at baseline, the corresponding hazard ratios were 0.29 (0.22-0.37) for less than 100 cells/microl, 0.33 (0.25-0.44) for 100 to less than 200 cells/microl, 0.38 (0.28-0.52) for 200 to less than 350 cells/microl, 0.55 (0.41-0.74) for 350 to less than 500 cells/microl, and 0.77 (0.58-1.01) for 500 cells/microl or more. The estimated hazard ratio varied with years since initiation of cART from 0.57 (0.49-0.67) for less than 1 year since initiation to 0.21 (0.14-0.31) for 5 years or more (P value for trend <0.001). CONCLUSION: We estimated that cART halved the average mortality rate in HIV-infected individuals. The mortality reduction was greater in those with worse prognosis at the start of follow-up.