Decline in condition of northern bluefin tuna (Thunnus thynnus) in the Gulf of Maine

The northern bluefin tuna (Thunnus thynnus) is a highly mobile apex predator in the Gulf of Maine. Despite current stock assessments that indicate historically high abundance of its main prey, Atlantic herring (Clupea harengus), commercial fishermen have observed declines in the somatic condition of northern bluefin tuna during the last decade. We examined this claim by reviewing detailed logbooks of northern bluefin tuna condition from a local fishermen’s cooperative and applying multinomial regression, a robust tool for exploring how a categorical variable may be related to other variables of interest. The data set contained >3082 observations of condition (fat and oil content and fish shape) from fish landed between 1991 and 2004. Energy from stored lipids is used for migration and reproduction; therefore a reduction in energy acquisition on bluefin tuna feeding grounds could diminish allocations to growth and gamete production and have detrimental consequences for rebuilding the western Atlantic population. A decline in northern bluefin tuna somatic condition could indicate substantial changes in the bottom-up transfer of energy in the Gulf of Maine, shifts in their reproductive or migratory patterns, impacts of fishing pressure, or synergistic effects from multiple causes.

The potential use of time-area closures to reduce catches of bigeye tuna (Thunnus obesus) in the purse-seine fishery of the eastern Pacific Ocean

Skipjack (Katsuwonus pelamis), yellowfin (Thunnus albacares), and bigeye (Thunnus obesus) tunas are caught by purse-seine vessels in the eastern Pacific Ocean (EPO). Although there is no evidence to indicate that current levels of fishing-induced mortality will affect the sustainability of skipjack or yellowfin tunas, fishing mortality on juvenile (younger than 5 years of age) bigeye tuna has increased, and overall fishing mortality is greater than that necessary to produce the maximum sustainable yield of this species. We investigated whether time-area closures have the potential to reduce purse-seine bigeye catches without significantly reducing skipjack catches. Using catch and effort data for 1995–2002, we identified regions where the ratio of bigeye to skipjack tuna catches was high and applied simple closed-area models to investigate the possible benefits of time-area closures. We estimated that the most optimistic and operationally feasible 3-month closures, covering the equatorial region of the EPO during the third quarter of the year, could reduce bigeye catches by 11.5%, while reducing skipjack tuna catches by 4.3%. Because this level of bigeye tuna catch reduction is insufficient to address sustainability concerns, and larger and longer closures would reduce catches of this species signficantly, we recommend that future research be directed toward gear technology solutions because these have been successful in many other fisheries. In particular, because over 50% of purse-seine catches of bigeye tuna are taken in sets in which bigeye tuna are the dominant species, methods to allow the determination of the species composition of aggregations around floating objects may be important.

Patterns of genetic variation in the endangered European mink (Mustela lutreola L., 1761)

Background: The European mink (Mustela lutreola, L. 1761) is a critically endangered mustelid, which inhabits several main river drainages in Europe. Here, we assess the genetic variation of existing populations of this species, including new sampling sites and additional molecular markers (newly developed microsatellite loci specific to European mink) as compared to previous studies. Probabilistic analyses were used to examine genetic structure within and between existing populations, and to infer phylogeographic processes and past demography. Results: According to both mitochondrial and nuclear microsatellite markers, Northeastern (Russia, Estonia and Belarus) and Southeastern (Romania) European populations showed the highest intraspecific diversity. In contrast, Western European (France and Spain) populations were the least polymorphic, featuring a unique mitochondrial DNA haplotype. The high differentiation values detected between Eastern and Western European populations could be the result of genetic drift in the latter due to population isolation and reduction. Genetic differences among populations were further supported by Bayesian clustering and two main groups were confirmed (Eastern vs. Western Europe) along with two contained subgroups at a more local scale (Northeastern vs. Southeastern Europe; France vs. Spain). Conclusions: Genetic data and performed analyses support a historical scenario of stable European mink populations, not affected by Quaternary climate oscillations in the Late Pleistocene, and posterior expansion events following river connections in both North-and Southeastern European populations. This suggests an eastern refuge during glacial maxima (as already proposed for boreal and continental species). In contrast, Western Europe was colonised more recently following either natural expansions or putative human introductions. Low levels of genetic diversity observed within each studied population suggest recent bottleneck events and stress the urgent need for conservation measures to counteract the demographic decline experienced by the European mink.

Depredation of catch by bottlenose dolphins (Tursiops truncatus) in the Florida king mackerel (Scomberomorus cavalla) troll fishery

We documented depredation by bottlenose dolphins (Tursiops truncatus) in the Florida king mackerel (Scomberomorus cavalla) troll fishery. Between March and June 2003, we conducted 26 interviews of charter and commercial fishermen in Islamorada, Florida, and 23 along Florida’s east coast from Fort Pierce south to Lake Worth Inlet. All fishermen indicated they had observed bottlenose dolphins depredating bait or catch—king mackerel being the species most often taken by dolphins. During on-board observations of depredation between March and June 2003, we found that dolphins took 6% of king mackerel caught by charter fishermen and 20% of fish caught by commercial fishermen. We concluded that depredation by bottlenose dolphin occurs commonly in this fishery and has the potential to incur a significant economic cost to king mackerel fishermen. To address this concern, we conducted preliminary tests of a gear modification designed to reduce depredation in the king mackerel fishery between December 2003 and January 2004. These tests demonstrated that a modification to the outrigger planer will successfully deter bottlenose dolphins from engaging in depredation, without causing a reduction in ca

Biology and assessment of the painted sweetlips (Diagramma pictum (Thunberg, 1792)) and the spangled emperor (Lethrinus nebulosus (Forsskål, 1775)) in the southern Arabian Gulf

The population biology and status of the painted sweeplips (Diagramma pictum) and spangled emperor (Lethrinus nebulosus) in the southern Arabian Gulf were established by using a combination of size-frequency, biological, and size-at-age data. Transverse sections of sagittal otoliths were characterized by alternating translucent and opaque bands that were validated as annuli. Comparisons of growth characteristics showed that there were no significant differences (P>0.05) between sexes. There were well defined peaks in the reproductive cycle, spawning occurred from April to May for both species, and the mean size at which females attained sexual maturity was 31.8 cm fork length (LF) for D. pictum and 27.6 cm (LF) for L. nebulosus. The mean sizes at first capture (21.1 cm LF for D. pictum and 26.4 cm LF for L. nebulosus) were smaller than the sizes for both at first sexual maturity and those at which yield per recruit would be maximized. The range of fishing-induced mortality rates for D. pictum (0.37−0.62/yr) was substantially greater than the target (Fopt=0.07/yr) and limit (Flimit=0.09/ yr) estimates. The range of fishing-induced mortality rates for L. nebulosus (0.15/yr to 0.57/yr) was also in excess of biological reference points (Fopt=0.10/yr and Flimit=0.13/yr). In addition to growth overfishing, the stocks were considered to be recruitment overfished because the biomass per recruit was less than 20% of the unexploited levels for both species. The results of the study are important to fisheries management authorities in the region because they indicate that both a reduction in fishing effort and mesh-size regulations are required for the demersal trap fishery.

Early response to nanoparticles in the Arabidopsis transcriptome compromises plant defence and root-hair development through salicylic acid signalling

Background: The impact of nano-scaled materials on photosynthetic organisms needs to be evaluated. Plants represent the largest interface between the environment and biosphere, so understanding how nanoparticles affect them is especially relevant for environmental assessments. Nanotoxicology studies in plants allude to quantum size effects and other properties specific of the nano-stage to explain increased toxicity respect to bulk compounds. However, gene expression profiles after exposure to nanoparticles and other sources of environmental stress have not been compared and the impact on plant defence has not been analysed. Results: Arabidopsis plants were exposed to TiO2-nanoparticles, Ag-nanoparticles, and multi-walled carbon nanotubes as well as different sources of biotic (microbial pathogens) or abiotic (saline, drought, or wounding) stresses. Changes in gene expression profiles and plant phenotypic responses were evaluated. Transcriptome analysis shows similarity of expression patterns for all plants exposed to nanoparticles and a low impact on gene expression compared to other stress inducers. Nanoparticle exposure repressed transcriptional responses to microbial pathogens, resulting in increased bacterial colonization during an experimental infection. Inhibition of root hair development and transcriptional patterns characteristic of phosphate starvation response were also observed. The exogenous addition of salicylic acid prevented some nano-specific transcriptional and phenotypic effects, including the reduction in root hair formation and the colonization of distal leaves by bacteria. Conclusions: This study integrates the effect of nanoparticles on gene expression with plant responses to major sources of environmental stress and paves the way to remediate the impact of these potentially damaging compounds through hormonal priming.

Impact pathway analysis for research planning: the case of aquatic resources research in the WorldFish Center

In line with its mandate of poverty reduction and sustainable development, the WorldFish Center is orienting its research towards high impact scientific activity. Identifying such activities is the task of prospective impact assessment, in turn based on impact pathway analysis. The paper describes a framework for analyzing benefits from aquatic resources research, the relevant research categories, pathways to impact by category, and indicators along each pathway that can be estimated in order to quantify probable research impact.

Spectroscopic study of galaxies in the Herschel Reference Sample

Galaxies are clusters of millions and billions of stars dynamically stable, with gas, dust and dark matter. They are the biggest isolated objects known in the Universe . Even though they are very complex systems, today we have a clear knowledge about their evolution and about their physical phenomena. Aside from the stellar component there is a gaseous component, principally neutral Hydrogen (HI), and dust that, although is not a significant component in terms of the mass, plays an important role on the absorption phenomena. Finally, cinematic and other kind of observations suggest the existence of a spheric dark matter halo, dominant in terms of mass and more extensive than the barionic component.

Assessment of the fishing effort level in the shrimp fisheries of the central and southern Gulf of California

In view of the concern caused by the declining trend in the annual shrimp yield in the Central Gulf of California, an attempt was made to analyze the fishing effort level exerted upon the shrimp stocks of the blue (Farfantepenaeus stylirostris) and the brown shrimp (F. californiensis) from 1980 to 1991. For this purpose, both Schaefer and Fox production models were applied. The results from these analyses revealed an economic overexploitation condition, and suggested an imperative need to implement as a regulatory measure, the reduction of the catch per unit of effort level (CPUE) to keep the fishery within acceptable bioeconomic margins of a maximum sustainable yield (Ys). This can only be achieved through the adjustment of the fleet size from 481 vessels down to 250 or 275.

Efforts to save the marine environment in Tanzania

The Tanzanian marine environment has been under threat for quite a long time now due to human activities. With the establishment of the Marine Parks and Reserve Act in 1994, several areas have been earmarked as marine parks. This act is aimed at conserving and protecting the marine environment all along the Tanzanian coastline. Once the parks and reserves are established and these areas brought under control, there will be a reduction in the illegal operations along the coast. The measures recently introduced by the government to eradicate dynamite fishing practices along the Tanzanian coastline are highly commendable.

Classification of Coastal Communities Reporting Commercial Fish Landings in the U.S. Northeast Region: Developing and Testing a Methodology

The National Marine Fisheries Service is required by law to conduct social impact assessments of communities impacted by fishery management plans. To facilitate this process, we developed a technique for grouping communities based on common sociocultural attributes. Multivariate data reduction techniques (e.g. principal component analyses, cluster analyses) were used to classify Northeast U.S. fishing communities based on census and fisheries data. The comparisons indicate that the clusters represent real groupings that can be verified with the profiles. We then selected communities representative of different values on these multivariate dimensions for in-depth analysis. The derived clusters are then compared based on more detailed data from fishing community profiles. Ground-truthing (e.g. visiting the communities and collecting primary information) a sample of communities from three clusters (two overlapping geographically) indicates that the more remote techniques are sufficient for typing the communities for further in-depth analyses. The in-depth analyses provide additional important information which we contend is representative of all communities within the cluster.

Government-Industry Cooperative Fisheries Research in the North Pacific under the MSFCMA

The National Marine Fisheries Service’s Alaska Fisheries Science Center (AFSC) has a long and successful history of conducting research in cooperation with the fishing industry. Many of the AFSC’s annual resource assessment surveys are carried out aboard chartered commercial vessels and the skill and experience of captains and crew are integral to the success of this work. Fishing companies have been contracted to provide vessels and expertise for many different types of research, including testing and evaluation of survey and commercial fishing gear and development of improved methods for estimating commercial catch quantity and composition. AFSC scientists have also participated in a number of industry-initiated research projects including development of selective fishing gears for bycatch reduction and evaluating and improving observer catch composition sampling. In this paper, we describe the legal and regulatory provisions for these types of cooperative work and present examples to illustrate the process and identify the requirements for successful cooperative research.

Estabelecimento de culturas de raízes in vitro e avaliação da produção de metabólitos secundários de Cleome spinosa Jacq. (Cleomaceae)

Cleome spinosa é uma espécie herbácea de uso na medicina popular, especialmente no Nordeste do Brasil. A cultura in vitro de raízes adventícias da espécie foi iniciada com segmentos radiculares (0,5 e 1,0 cm) obtidos a partir de duas fontes de explantes: plantas propagadas in vitro e plantas oriundas do processo de germinação in vitro. Os explantes foram inoculados em meio MS líquido suplementado ou não com as auxinas ANA, AIA e AIB em diferentes concentrações (0,5; 1,0; 1,5; 3,0; 5,0 mg.L-1). As culturas foram mantidas em sala de crescimento, sob agitação (100 rpm) e sob fotoperíodo de 16h ou no escuro, com subculturas a cada 45 dias. Explantes oriundos de plantas propagadas in vitro também foram cultivados em meio contendo a citocinina BAP em associação com auxinas, na presença de sorbitol (isoladamente ou em associação com sacarose), em meio MS contendo redução na concentração total de sais minerais (MS1/2 e MS1/4) e em meio sólido. Os resultados mostraram que a adição de auxinas ao meio de cultura foi essencial à multiplicação das raízes, uma vez que em meio MS0 ocorreu significativo desenvolvimento de brotos. A suplementação com ANA não foi eficiente para a produção de raízes e acarretou no calejamento dos explantes, enquanto que a presença de AIA e AIB resultaram na multiplicação das raízes. Ainda assim, independentemente das manipulações realizadas no meio de cultivo, a capacidade de multiplicação mostrou-se reduzida. Uma expressiva multiplicação de raízes foi observada em culturas iniciadas a partir de explantes oriundos de plantas obtidas por germinação in vitro. A maior produção de biomassa foi alcançada em culturas iniciadas com segmentos radiculares de plantas obtidas por germinação in vitro cultivadas em meio contendo com 3,0 mg.L-1 de AIB e mantidas no escuro. Culturas estabelecidas nas melhores condições para acúmulo de biomassa foram acompanhadas por três subculturas, sendo avaliados períodos de cultura de 45 dias e de 60 dias. Culturas mantidas a intervalos de 45 dias apresentaram maior produção de raízes durante a segunda subcultura, enquanto que para o intervalo de 60 dias, embora tenha sido observada a capacidade de multiplicação das raízes, a maior produção de biomassa ocorreu nos primeiros 60 dias de cultivo. A partir de materiais in vivo e in vitro foram realizadas extrações com solventes de polaridade crescente (hexano, diclorometano, acetato de etila e metanol) e os extratos foram submetidos a avaliações cromatográficas. As análises por cromatografia em camada delgada mostraram a presença de terpenos nos extratos obtidos com hexano e diclorometano, tanto em material obtido a campo como naqueles produzidos in vitro e de compostos fenólicos nos extratos em acetato de etila obtidos a partir de material de campo. Pelas análises por cromatografia líquida associada à espectrometria de massas foi possível observar a presença de flavonoides nas culturas in vitro, não detectados no material de campo. As análises por cromatografia de fase gasosa associada à espectrometria de massas apontaram a presença de esteroides nos extratos em hexano de raízes coletadas a campo e nas culturas in vitro de raízes. Os resultados obtidos mostraram a viabilidade da produção de culturas de raízes in vitro para a espécie C. spinosa e o potencial deste material para a produção de substâncias bioativas, algumas não encontradas em material coletado a campo

Transplantation of human fetal blood stem cells in the osteogenesis imperfecta mouse leads to improvement in multiscale tissue properties.

Osteogenesis imperfecta (OI or brittle bone disease) is a disorder of connective tissues caused by mutations in the collagen genes. We previously showed that intrauterine transplantation of human blood fetal stem/stromal cells in OI mice (oim) resulted in a significant reduction of bone fracture. This work examines the cellular mechanisms and mechanical bone modifications underlying these therapeutic effects, particularly examining the direct effects of donor collagen expression on bone material properties. In this study, we found an 84% reduction in femoral fractures in transplanted oim mice. Fetal blood stem/stromal cells engrafted in bones, differentiated into mature osteoblasts, expressed osteocalcin, and produced COL1a2 protein, which is absent in oim mice. The presence of normal collagen decreased hydroxyproline content in bones, altered the apatite crystal structure, increased the bone matrix stiffness, and reduced bone brittleness. In conclusion, expression of normal collagen from mature osteoblast of donor origin significantly decreased bone brittleness by improving the mechanical integrity of the bone at the molecular, tissue, and whole bone levels.