Human-modified ecosystems and future evolution

Our global impact is finally receiving the scientific attention it deserves. The outcome will largely determine the future course of evolution. Human-modified ecosystems are shaped by our activities and their side effects. They share a common set of traits including simplified food webs, landscape homogenization, and high nutrient and energy inputs. Ecosystem simplification is the ecological hallmark of humanity and the reason for our evolutionary success. However, the side effects of our profligacy and poor resource practices are now so pervasive as to threaten our future no less than that of biological diversity itself. This article looks at human impact on ecosystems and the consequences for evolution. It concludes that future evolution will be shaped by our awareness of the global threats, our willingness to take action, and our ability to do so. Our ability is presently hampered by several factors, including the poor state of ecosystem and planetary knowledge, ignorance of human impact, lack of guidelines for sustainability, and a paucity of good policies, practices, and incentives for adopting those guidelines in daily life. Conservation philosophy, science, and practice must be framed against the reality of human-dominated ecosystems, rather than the separation of humanity and nature underlying the modern conservation movement. The steps scientists can take to imbed science in conservation and conservation in the societal process affecting the future of ecosystems and human well-being are discussed.

Total synthesis of cytochrome b562 by native chemical ligation using a removable auxiliary

We have completed the total chemical synthesis of cytochrome b562 and an axial ligand analogue, [SeMet7]cyt b562, by thioester-mediated chemical ligation of unprotected peptide segments. A novel auxiliary-mediated native chemical ligation that enables peptide ligation to be applied to protein sequences lacking cysteine was used. A cleavable thiol-containing auxiliary group, 1-phenyl-2-mercaptoethyl, was added to the α-amino group of one peptide segment to facilitate amide bond-forming ligation. The amine-linked 1-phenyl-2-mercaptoethyl auxiliary was stable to anhydrous hydrogen fluoride used to cleave and deprotect peptides after solid-phase peptide synthesis. Following native chemical ligation with a thioester-containing segment, the auxiliary group was cleanly removed from the newly formed amide bond by treatment with anhydrous hydrogen fluoride, yielding a full-length unmodified polypeptide product. The resulting polypeptide was reconstituted with heme and folded to form the functional protein molecule. Synthetic wild-type cyt b562 exhibited spectroscopic and electrochemical properties identical to the recombinant protein, whereas the engineered [SeMet7]cyt b562 analogue protein was spectroscopically and functionally distinct, with a reduction potential shifted by ≈45 mV. The use of the 1-phenyl-2-mercaptoethyl removable auxiliary reported here will greatly expand the applicability of total protein synthesis by native chemical ligation of unprotected peptide segments.

4-Coumarate:Coenzyme A Ligase in Hybrid Poplar1 : Properties of Native Enzymes, cDNA Cloning, and Analysis of Recombinant Enzymes

The enzyme 4-coumarate:coenzyme A ligase (4CL) is important in providing activated thioester substrates for phenylpropanoid natural product biosynthesis. We tested different hybrid poplar (Populus trichocarpa × Populus deltoides) tissues for the presence of 4CL isoforms by fast-protein liquid chromatography and detected a minimum of three 4CL isoforms. These isoforms shared similar hydroxycinnamic acid substrate-utilization profiles and were all inactive against sinapic acid, but instability of the native forms precluded extensive further analysis. 4CL cDNA clones were isolated and grouped into two major classes, the predicted amino acid sequences of which were 86% identical. Genomic Southern blots showed that the cDNA classes represent two poplar 4CL genes, and northern blots provided evidence for their differential expression. Recombinant enzymes corresponding to the two genes were expressed using a baculovirus system. The two recombinant proteins had substrate utilization profiles similar to each other and to the native poplar 4CL isoforms (4-coumaric acid > ferulic acid > caffeic acid; there was no conversion of sinapic acid), except that both had relatively high activity toward cinnamic acid. These results are discussed with respect to the role of 4CL in the partitioning of carbon in phenylpropanoid metabolism.

The folding mechanism of larger model proteins: role of native structure.

The folding mechanism of a 125-bead heteropolymer model for proteins is investigated with Monte Carlo simulations on a cubic lattice. Sequences that do and do not fold in a reasonable time are compared. The overall folding behavior is found to be more complex than that of models for smaller proteins. Folding begins with a rapid collapse followed by a slow search through the semi-compact globule for a sequence-dependent stable core with about 30 out of 176 native contacts which serves as the transition state for folding to a near-native structure. Efficient search for the core is dependent on structural features of the native state. Sequences that fold have large amounts of stable, cooperative structure that is accessible through short-range initiation sites, such as those in anti-parallel sheets connected by turns. Before folding is completed, the system can encounter a second bottleneck, involving the condensation and rearrangement of surface residues. Overly stable local structure of the surface residues slows this stage of the folding process. The relation of the results from the 125-mer model studies to the folding of real proteins is discussed.

Identification of pentosidine as a native structure for advanced glycation end products in beta-2-microglobulin-containing amyloid fibrils in patients with dialysis-related amyloidosis.

beta-2-Microglobulin (beta-2m) is a major constituent of amyloid fibrils in patients with dialysis-related amyloidosis (DRA). Recently, we found that the pigmented and fluorescent adducts formed nonenzymatically between sugar and protein, known as advanced glycation end products (AGEs), were present in beta-2m-containing amyloid fibrils, suggesting the possible involvement of AGE-modified beta-2m in bone and joint destruction in DRA. As an extension of our search for the native structure of AGEs in beta-2m of patients with DRA, the present study focused on pentosidine, a fluorescent cross-linked glycoxidation product. Determination by both HPLC assay and competitive ELISA demonstrated a significant amount of pentosidine in amyloid-fibril beta-2m from long-term hemodialysis patients with DRA, and the acidic isoform of beta-2m in the serum and urine of hemodialysis patients. A further immunohistochemical study revealed the positive immunostaining for pentosidine and immunoreactive AGEs and beta-2m in macrophage-infiltrated amyloid deposits of long-term hemodialysis patients with DRA. These findings implicate a potential link of glycoxidation products in long-lived beta-2m-containing amyloid fibrils to the pathogenesis of DRA.

Services Evolution of Two Groundwater Dependent Wetland Ecosystems in the “Mancha Húmeda” Biosphere Reserve (Spain)

A wetland that does not comply with the ecological standards of EU Directive 2000/60/EC cannot properly provide its services. This paper presents a review of the criteria for wetland assessment based on the Spanish experience in two specific Ramsar areas: the Tablas de Daimiel and the Ruidera Lakes. The aim of this article is to consider and promote a holistic awareness of the hydrological cycle and of the wetland area ecosystems within it. The methodology developed under the umbrella of the UNESCO project IGCP 604 is applied to describe the groundwater-wetland-human interrelationship. This methodology was chosen for two reasons: (a) it is designed to assess the services the wetlands provide; (b) it focuses on groundwater dependent wetlands such as the two cases presented here. In each case, although to a different extent, agricultural activities and water management have led to important changes in the services provided by the two ecosystems.

Estudo da qualidade do mel de abelhas sem ferrão por análise por ativação neutrônica instrumental

O Brasil é um dos maiores produtores mundiais de mel, no qual sua produção é baseada principalmente na criação da espécie exótica Apis mellifera. A produção de mel da Apis mellifera é cerca de 10 vezes maior que das espécies de abelhas sem ferrão, contudo, o mel de abelhas nativas possui maior valor comercial. Embora pouco explorado, o mel de abelhas sem ferrão desperta interesse em indústrias de cosméticos e medicinas naturais. A sua produção se apresenta como uma ferramenta com grande potencial para agregar valor econômico aos ecossistemas brasileiros, em especial os florestais, de forma sustentável e com menor potencial de influências de contaminantes traços. A qualidade química do mel é um importante requisito comercial, principalmente o destinado à exportação. Como exemplo, a União Européia em 2006 decidiu suspender a importação do mel produzido no Brasil sob alegação de que o país não possuía equivalência ao bloco quanto as diretrizes para o controle de resíduos e qualidade do produto. Diante do potencial de produção comercial sustentável do mel de abelhas nativas brasileiras e a falta de conhecimento sobre possíveis resíduos encontrados em sua composição, em especial os elementos traços, como objetivo principal deste trabalho pretendeu-se caracterizar a composição de elementos químicos do mel de abelhas sem ferrão, comparar com o de Apis mellifera e verificar as possíveis variações causadas pelo ambiente. Este estudo investigou a composição química dos méis de abelhas sem ferrão de cinco estados brasileiros: Bahia, Minas Gerais, Rio Grande do Norte, Santa Catarina e São Paulo; compreendendo um total de 70 colméias de diferentes espécies: Melipona quadrifasciata, Melipona scutelaris, Melipona mandacaia, Melipona capixaba, Melipona rufiventris, Melipona compressipes, Melipona bicolor, Nannotrigona testaceicornis, Tetragona clavipes, Tetragonisca angustula e Scaptotrigona sp.. Pólen, a principal fonte de minerais para a colméia, e as próprias abelhas foram também coletadas para estudos de composição e correlação com os méis. A análise por ativação neutrônica instrumental permitiu a determinação de Br, Ca, Co, Cs, Fe, La, Na, Rb, Sc e Zn nos méis, Br, Ca, Co, Cs, Fe, K, La, Na, Rb, Sc, Se e Zn nas amostras de pólen e As, Br, Co, Cr, Cs, Fe, K, La, Na, Rb, Sb, Sc, Se e Zn em abelhas. Méis das abelhas da subtribo trigonina apresentaram maiores concentrações dos elementos alcalinos. Alta razão K/Na foram observadas nas amostras de mel e pólen. Pólen se apresentou como uma grande fonte de P e Se. Análises quimiométricas indicaram os méis e abelhas como bons indicadores de atividades antrópicas. Arsênio apareceu nas abelhas coletadas em áreas de maior atividade antrópica. Como resultado, este estudo tem demonstrado o potencial nutracêutico do mel e pólen meliponícola e o potencial das abelhas nativas como ferramentas de avaliação da qualidade ambiental. A proximidade a atividades antrópicas mostrou-se fator decisivo para concentrações mais elevadas de As mas abelhas

Policy Development at a Local Level to Mitigate Depositing Endocrine Disruptors into Aquatic Ecosystems

Endocrine disruptors are suspected to cause disruption to organisms in aquatic environments. Intersex fish and skewed populations of females outnumbering males have been found where effluents from municipal wastewater treatment plants enter into receiving waters. The science needed to substantiate a link of these suspected pollutants as the cause of problems to human health or the environmental is in its infancy. Empirical research was used to identify suspected endocrine disruptors, their sources, and the difficulties involved in regulating these emerging contaminants. This project examined entities that are addressing endocrine disruption and provides cost-effective recommendations for municipalities to develop policies to mitigate the amount of endocrine disruptors entering into receiving waters and limiting the effects caused by endocrine disruption.

The Adequacy of Wildlife Management on an Endangered Species: A Design Template for Ecosystems Management in Alabama

The Alabama beach mouse (ABM) was listed an an endangered species in 1985. The ABM has been cited as being minimally managed since its listing. The Sierra Club points out the lack of Primary Consituent Elements (PCE) that are required by the Endangered Species Act of 1973. While traditional habitat status is mired in legal and bureaucratic delays, effective management remains less than optimal. Ecosystem management presents with it, new observable and technological tools that may present a panacea in the ABM's paradox. This Capstone looks at the possible implementation of an ecosystems management alternative in aiding the persistence of a small isolated and endangered species.

Mangrove, Crab and Shorebird Activity as Bioindicators to the Health Status of Mangrove Ecosystems along the Surinamese Coastline, South America

This study focused on the shorebird activity along the Surinamese coast in relation to the mangrove ecosystem health. The health of three estuarine mangrove areas was assessed using important bioindicators of the mangrove ecosystem: crabs, birds and mangroves. Mangrove vegetation was measured at Weg Naar Zee, Matapica canal delta and Coronie coast. Crab activity was measured by burrow and crab counts. Occurring shorebirds were also counted at these areas. The results show that mangrove regeneration and shorebird activity is significantly related to the health of the ecosystem. Weg Naar Zee was the most damaged and highest at risk. Matapica canal delta and the Coronie coast were the least damaged, with Coronie coast showing greatest health and biodiversity of the indicators.