A close phylogenetic relationship between Sipuncula and Annelida evidenced from the complete mitochondrial genome sequence of Phascolosoma esculenta

Background: There are many advantages to the application of complete mitochondrial (mt) genomes in the accurate reconstruction of phylogenetic relationships in Metazoa. Although over one thousand metazoan genomes have been sequenced, the taxonomic sampling is highly biased, left with many phyla without a single representative of complete mitochondrial genome. Sipuncula (peanut worms or star worms) is a small taxon of worm-like marine organisms with an uncertain phylogenetic position. In this report, we present the mitochondrial genome sequence of Phascolosoma esculenta, the first complete mitochondrial genome of the phylum. Results: The mitochondrial genome of P. esculenta is 15,494 bp in length. The coding strand consists of 32.1% A, 21.5% C, 13.0% G, and 33.4% T bases (AT = 65.5%; AT skew = -0.019; GC skew = -0.248). It contains thirteen protein-coding genes (PCGs) with 3,709 codons in total, twenty-two transfer RNA genes, two ribosomal RNA genes and a non-coding AT-rich region (AT = 74.2%). All of the 37 identified genes are transcribed from the same DNA strand. Compared with the typical set of metazoan mt genomes, sipunculid lacks trnR but has an additional trnM. Maximum Likelihood and Bayesian analyses of the protein sequences show that Myzostomida, Sipuncula and Annelida (including echiurans and pogonophorans) form a monophyletic group, which supports a closer relationship between Sipuncula and Annelida than with Mollusca, Brachiopoda, and some other lophotrochozoan groups. Conclusion: This is the first report of a complete mitochondrial genome as a representative within the phylum Sipuncula. It shares many more similar features with the four known annelid and one echiuran mtDNAs. Firstly, sipunculans and annelids share quite similar gene order in the mitochondrial genome, with all 37 genes located on the same strand; secondly, phylogenetic analyses based on the concatenated protein sequences also strongly support the sipunculan + annelid clade (including echiurans and pogonophorans). Hence annelid "key-characters" including segmentation may be more labile than previously assumed.

烟厂MIS中成本核算子系统实现时的几个重要问题

针对工厂企业中用微机实现管理信息系统(MIS)时,数据量大与数据处理速度慢、存储空间小之间的矛盾,本文论述了在不更新设备和不增加投资的条件下如何用软件方法来解决问题.在延吉卷烟厂成本核算子系统中的实践结果是:数据处理速度可提高到原来的2.24倍,所节省的存储空间相当于目前实际占用数的56%.

Petri网理论在柔性制造系统(FMS)性能分析中的应用

本文用 Petri 网的一个子类——时间事件图对流水车间型和作业车间型的柔性制造系统(FMS)建模并进行理论分析,给出了可行排序的判定条件及系统中托盘数量配置与系统生产率的关系,对系统的主要性能指标,如生产周期、工件驻留时间、在制品库存等给出了定量描述.这些结果为系统的设计和运行提供了理论依据.

不可提取态有机质对菲和萘的吸附过程的影响

土壤对疏水性有机污染物的吸附实际上是土壤中矿物和有机质两部分共同作用的结果。土壤有机质的作用相当重要，因为与矿物相比，它通常对疏水性有机污染物具有较大的热力学亲合力。因此，土壤吸附有机污染物机理的研究主要是从土壤有机质的角度进行的。土壤有机质组成复杂，主要包括非特异性有机质和腐殖质，其中腐殖质约占有机质总量的50％-80％，包括胡敏酸、富里酸和胡敏素。早期的实验研究认为疏水性有机污染物在土壤有机质相中表现为线性分配，可以用平衡分配系数来描述。但是，随着实验研究的深入，平衡分配模型不能合理解释疏水性有机污染物的一些吸附特征，如非线性吸附、溶质竞争吸附以及解吸过程的滞后现象等。后来，Weber和Huang提出土壤吸附有机污染物的三端元模型。同时Pignatello和Xing提出双模式吸附模型。都认为土壤有机质存在明显的不均匀性，并且提出了“软碳”与“硬碳”的概念.

Growth of ultrafine zeolite Y crystals on metakaolin microspheres

Ultrafine zeolite Y crystals (ca. 100-200 nm) have been successfully grown on metakaolin microspheres (< 100 mu m) for which good hydrothermal stability was observed; products were characterized by powder X-ray diffraction, scanning electronic microscopy and transmission electronic microscopy.

Analysis of the elements of catabolite repression in Clostridium acetobutylicum.

The ptsH gene, encoding the phosphotransferase protein HPr, from Clostridium acetobutylicum ATCC 824 was identified from the genome sequence, cloned and shown to complement a ptsH mutant of Escherichia coli. The deduced protein sequence shares significant homology with HPr proteins from other low-GC gram-positive bacteria, although the highly conserved sequence surrounding the Ser-46 phosphorylation site is not well preserved in the clostridial protein. Nevertheless, the HPr was phosphorylated in an ATP-dependent manner in cell-free extracts of C. acetobutylicum. Furthermore, purified His-tagged HPr from Bacillus subtilis was also a substrate for the clostridial HPr kinase/phosphorylase. This phosphorylation reaction is a key step in the mechanism of carbon catabolite repression proposed to operate in B. subtilis and other low-GC gram-positive bacteria. Putative genes encoding the HPr kinase/phosphorylase and the other element of this model, namely the catabolite control protein CcpA, were identified from the C. acetobutylicum genome sequence, suggesting that a similar mechanism of carbon catabolite repression may operate in this industrially important organism.

Health-Related Quality of Life for individuals with hepatitis C: A narrative review.

BACKGROUND The assessment of Health-Related Quality of Life (HRQoL) in hepatitis C (HCV) infected individuals continues to gain importance. However, rarely do reviews of this literature consider quantitative and qualitative accounts of HRQoL collectively, which only allows partial insight into the topic. This narrative review aims to address this gap in the literature. METHODS Literature searches were conducted using seven databases with two separate search strategies, and results assessed for eligibility using specific inclusion/exclusion criteria; a data extraction sheet was used to identify the dominant themes for each research paradigm which were then distilled to key findings to construct the narrative. RESULTS Quantitative investigation reveals a low HRQoL in individuals with HCV due to a complex multifactorial cause. During treatment for HCV, a further transient reduction is observed, followed by improvement if a sustained virological response is achieved. Qualitative data provide a recognisable voice to the everyday challenges experienced by individuals with HCV including insights into diagnosis and stigmatisation, contextualising how a reduced HRQoL is experienced day-to-day. Methodological limitations of these findings are then discussed. Much of the quantitative data has little relevance to current substance users as they are excluded from most trials, and appraisal of the qualitative literature reveals a marked difference in the lived experience of HCV infected current substance users and that of other HCV groups. CONCLUSION Concurrent analysis of quantitative and qualitative paradigms provides a deeper understanding of the true burden of HCV illness on HRQoL. Greater utilisation of qualitative research within international clinical guidelines is likely to be of benefit in identifying relevant HRQoL outcomes for substance users.

Introduction to logical information systems

Ridoux, O. and Ferr?, S. (2004) Introduction to logical information systems. Information Processing & Management, 40 (3), 383-419. Elsevier

The mixing of bubbles in two-dimensional bidisperse foams under extensional shear

Cox, S.J. (2006) The mixing of bubbles in two-dimensional bidisperse foams under extensional shear. Journal of Non-Newtonian Fluid Mechanics . 137:39-45.

Aiding classification of gene expression data with feature selection: a comparative study

C. Shang and Q. Shen. Aiding classification of gene expression data with feature selection: a comparative study. Computational Intelligence Research, 1(1):68-76.

Contraction/expansion flows: The pressure drop and related issues

Binding, David; Phillips, P.M.; Philips, T.N., (2006) 'Contraction/expansion flows: The pressure drop and related issues', Journal of Non-Newtonian Fluid Mechanics 137 pp.31-38 RAE2008

A role for LH in the regulation of expression of mRNAs encoding components of the insulin-like growth factor (IGF) system in the ovine corpus luteum

P.M. Hastie and W. Haresign (2006). A role for LH in the regulation of expression of mRNAs encoding components of the insulin-like growth factor (IGF) system in the ovine corpus luteum. Animal Reproduction Science, 96(1-2), 196-209. Sponsorship: DEFRA RAE2008

Analysis of the chlorophyll catabolism pathway in leaves of an introgression senescence mutant of Lolium temulentum

Maria Roca, Caron James, Adriana Pruzinsk?, Stefan H?rtensteiner, Howard Thomas and Helen Ougham. Analysis of the chlorophyll catabolism pathway in leaves of an introgression senescence mutant of Lolium temulentum. Phytochemistry, 65 (9), 1231-1238. Sponsorship: BBSRC RAE2008