Structure of 2',3'-O-Isopropylidene-5'-O-tosyluridine, C19H22N 2Oas

M r = 438.45, trigonal, P32, a = b = 13.385 (4), c = 9.900 (5) A,, V = 1536.0 A 3, Z = 3, D x = 1.42, D m = 1.42 Mg m -3, 2(Cu Ka) = 1.5418 A,,g(CuKa) = .800mm -], T=290K, F(000)=690, R=6.0% for 1222 unique reflections with F o>_2o(Fo). This is the first 2',3'-O-isopropylidene pyrimidine nucleoside with the base in a syn orientation with respect to the ribose [Xcy= 116.0(7)°]. The ribose has a C(3')-endo conformation with the phase angle of pseudorotation P = 16.36 (2) °. The dioxolane ring assumes an envelope conformation with 0(2') displaced from the best four-atom plane by 0.50 (1) k. The crystal structure is possibly stabilized by a bifurcated hydrogen bond between N(3) and the 0(2) and 0(4) atoms of screw-related molecules.

Pasteurella multocida detection by 5' Taq nuclease assay: a new tool for use in diagnosing fowl cholera

A 5′ Taq nuclease assay utilising minor groove binder technology and targeting the 16S rRNA gene was designed to detect Pasteurella multocida (the causative agent of fowl cholera) in swabs collected from poultry. The assay was first evaluated using pure cultures. The assay correctly identified four P. multocida taxonomic type strains, 18 P. multocida serovar reference strains and 40 Australian field isolates (17 from poultry, 11 from pigs and 12 from cattle). Representatives of nine other Pasteurella species, 26 other bacterial species (18 being members of the family Pasteurellaceae) and four poultry virus isolates did not react in the assay. The assay detected a minimum of approximately 10 cfu of P. multocida per reaction. Of 79 poultry swabs submitted to the laboratory for routine bacteriological culture, 17 were positive in the 5′ Taq nuclease assay, but only 10 were positive by culture. The other 62 swabs were negative for P. multocida by both 5′ Taq nuclease assay and culture. The assay is suitable for use in diagnosing fowl cholera, is more rapid than bacteriological culture, and may also have application in diagnosing P. multocida infections in cattle and pigs.

Effect of inter-edge Coulomb interactions on transport through a point contact in nu=5/2 quantum Hall state

We study transport across a point contact separating two line junctions in a nu = 5/2 quantum Hall system. We analyze the effect of inter-edge Coulomb interactions between the chiral bosonic edge modes of the half-filled Landau level (assuming a Pfaffian wave function for the half-filled state) and of the two fully filled Landau levels. In the presence of inter-edge Coulomb interactions between all the six edges participating in the line junction, we show that the stable fixed point corresponds to a point contact that is neither fully opaque nor fully transparent. Remarkably, this fixed point represents a situation where the half-filled level is fully transmitting, while the two filled levels are completely backscattered; hence the fixed point Hall conductance is given by G(H) = 1/2e(2)/h. We predict the non-universal temperature power laws by which the system approaches the stable fixed point from the two unstable fixed points corresponding to the fully connected case (G(H) = 5/2e(2)/h) and the fully disconnected case (G(H) = 0).

Expression Profiling of Nucleotide Metabolism-Related Genes in Human Breast Cancer Cells After Treatment with 5-Fluorouracil

5-Fluorouracil (5-FU) is one of the most widely used drugs for treatment of cancers, including breast cancer that exhibits its anticancer activity by inhibiting DNA synthesis and also incorporated into DNA and RNA. The objective of this investigation was to find out the total nucleotide metabolism genes regulated by 5-FU in breast cancer cell line. The breast cancer cell line MCF-7 was treated with the drug 5-FU. To analyze the expression of genes, we have conducted the experiment using 1.7k and 19k human microarray slide and confirmed the expression of genes by semiquantitative reverse transcription-polymerase chain reaction. The expression of 44 genes involved in the nucleotide metabolism pathway was quantified. Of these 44 genes analyzed, transcription of 6 genes were upregulated and 9 genes were downregulated. Earlier studies revealed that the transcription of genes for key enzymes like thymidylate synthase, thymidinekinase, and dihydropyrimidine dehydrogenase are regulated by 5-FU. This study identified some novel genes like thioredoxin reductase, ectonucleotide triphosphate dephosphorylase, and CTP synthase are regulated by 5-FU. The data also reveal large-scale perturbation in transcription of genes not involved directly in the known mechanism of action of 5-FU.

Structure of Disodium Deoxyeytidine 5'-Phosphate Heptahydrate, C9H 12N30TP2-.2N a +. 7H 20

M,=477.3, orthorhombic, P2~2~2~, a= 6.719.(4), b=29.614(15), c= 9.559 (3) ~, Z=4, U-- 1902.0 A 3, D x = 1.67 Mg m -3, 2(Cu Ka) = 1.5418A, /~=l.90mm -1, T=290K. Final R for 1809 observed reflections is 0.045. The structure shows an unusual gauche-trans conformation about the C(4')-C(5') bond, while the sugar pucker [C(3')-exo] and glycosidic torsion angle [)CCN = 70.2 (5) °, anti] are normal. The two Na + ions do not interact with the molecule directly, being completely surrounded by water molecules. The cytosine bases are stacked, with a separation distance of 3.36 (5) A.

Olivier Messiaenin väriharmoniat

Tutkielmassani käsittelen ranskalaisen säveltäjän Olivier Messiaenin (1908-1992) synestesiaan liittyvää harmonista ajattelua. Messiaen oli ääni-väri -synesteetikko, toisin sanoen hän näki kuulemansa musiikin väreinä. Tältä pohjalta hän kehitti monimutkaisten sointujen ja asteikkojen järjestelmän, jonka puitteissa hän pystyi ikään kuin maalaamaan musiikillaan haluamansa värit. Esittelen aluksi tämänhetkistä synestesiatutkimusta lähinnä kolmen vallitsevassa asemassa olevan päälinjan pohjalta. Näitä edustavat yhdysvaltalainen Richard Cytowic, britti Simon Baron-Cohen ja saksalainen Hinderk Emrich. Käyn läpi heidän määritelmänsä synestesiasta ja näkemyksiään synesteettisistä säveltäjistä. Messiaen on jossain määrin tuonut esiin musiikkinsa värejä lähes uransa alusta lähtien, mutta huomiot ovat yleensä olleet melko ylimalkaisia ja epäjärjestelmällisiä. Tuon esiin näitä eri lähteistä löytyneitä Messiaenin näkemyksiä ja kokemuksia tarkasteltuna Messiaenin henkilökohtaisen sävellysfilosofian pohjalta sekä tiettyihin Messiaenin sävellyksiin ja niiden harmonisiin rakenteisiin liittyen. Messiaenin kuoleman jälkeen vuosina 1994-2002 julkaistun seitsenosaisen teossarjan Traité de rythme, de couleur, et d'ornitologie viimeisessä osassa Messiaen esittää järjestelmällisesti kaikkien erikoissointujensa ja moodiensa värityksen. Tarkastelen Messiaenin käyttämiä harmonioita jakamalla ne yleisiin ja erikoissointuihin sekä moodeihin. Määritellessäni näitä harmonioita käytän metodina sävelluokkajoukkojen teoriaa, jonka avulla kaikki sävelyhdistelmät voidaan määritellä yksiselitteisesti. Esittelen joukkoteoriaa ja siihen liittyviä käsitteitä siinä määrin kuin se liittyy tutkielmaani, enkä siis yritäkään tuoda esiin analyysimetodia koko laajuudessaan. Olen rekonstruoinut visuaalisesti Messiaenin käyttämät noin 150 harmonista väriä, ja tutkielmani liitteenä olevalla CD-romilla esitän ne soivassa ja näkyvässä muodossa. Tällä CD-romilla on myös analyysiMessiaenin urkuteoksen Méditations sur le mystère de la Sainte Trinité 5. osan alusta, jossa tutkin käytännön tasolla värien ilmenemistä Messiaenin musiikissa. Tutkielmani keskeinen osa onkin tämä CD-rom, ja siitä ilmennee myös tutkielmani lähtökohta ja tavoite: luoda työkalu Messiaenin musiikin värisisältöjen hahmottamiseen.

Sananlaskujen käyttäjät ja käyttöyhteys : Sananlaskut käyttökontekstissaan 'Perinne elämässäni' -kilpakirjoituksen aineistossa

Tutkielmassa lähestytään sananlaskuja niiden käyttökontekstin kautta. Tarkastelun kohteena on kirjoitettu kertova aineisto, jossa esiintyy sananlaskuja muun kerronnan yhteydessä. Sananlaskuja lähestytään kuulijan näkökulmasta, kuulijan tulkintaan tukeutuen. Aineistona on Kalevalan juhlavuoden 1985 kilpakirjoitus "Perinne elämässäni". Tarkasteltavina ovat kilpakirjoituksen aihepiirit 1. "Koti ja suku" sekä 5. "Sukupuoliroolit ja kasvatus avioliittoon". Tutkielman aineiston muodostavat vastaukset, joissa kerronta käyttää sananlaskuja. Tällaisia vastauksia on yhteensä 170 kerääjän aineistossa (188 vastaajalta) koko kilpakeruun ko. aihepiirien sisältäessä 439 keräystä. Vastaajien ikä vaihtelee 13-90 ikävuoden välillä. Muisteluaineisto käsittelee vuosia 1900-1985. Kilpakeruun vastaukset ovat muistelukerrontaa. Tämän tutkielman aineistossa kertojat muistelevat lapsuuttaan ja tuovat esille kuulijan näkökulman sananlaskujen käyttötilanteista. Sekä arkistotietoon että muistelukerrontaan liittyy olennaisesti aineiston lähdekriittinen tarkastelu. Tutkimuksessa sananlasku on yleisnimitys. Vastaajat ovat käsitelleet yhdenvertaisesti sananlaskuna niin sananlaskut, sananparret, sanonnat kuin raamatunlauseetkin, joten tutkielmassakin ne on käsitelty sananlaskuina. Tutkimustehtävänä on ollut selvittää yhtäältä kuka sananlaskuja käytti ja toisaalta missä tarkoituksessa sananlaskuja käytettiin. Näkökulma on kuulijan. Ensimmäiseen kysymykseen vastaus haettiin kertomuksissa olleista maininnoista, kuten esimerkiksi "äiti sanoi ...", "kuulin mummoltani ...", "lapsuudessani neuvottiin ...", "isälläni oli tapana sanoa ...". Toista kysymystä lähestyttiin käyttöyhteyden teonsanalla. Oletuksena oli, että kuulija käyttämällään verbillä kertoi, missä mielessä hän sananlaskuja koki käytetyn. Kertomusten mukaan sananlaskujen käytön koettiin liittyvän neuvoviin ja ohjaaviin tapahtumiin, kotona tapahtuneeseen kasvatukseen. Ne olivat osa kasvatuksessa käytettyä puhetta. Toinen aineistossa esiin tullut sananlaskujen käyttöyhteys oli sananlaskujen käyttö retorisena tehokeinona. Väitteitä voitiin todentaa, kumota, vahvistaa jne. sananlaskujen avulla. Sananlaskuja kerrotiin kuullun ennen kaikkea kotona, kotiympäristössä. Niiden alkuperä voi olla joko personoimaton ryhmä tai käyttäjä oli nimetty. Kun kyseessä oli ryhmän personoimaton puhe tai tieto, oli kyse ennen kaikkea vanhojen tiedosta, viisaista lauseista. Milloin sananlaskut on kuultu nimetyltä henkilöltä, oli kyseessä useimmiten äiti tai isoäiti. Tämä selittynee osin sillä, että lasten kasvatuksesta ovat kotiympäristössä huolehtineet suvun ja perheen naiset.

Structure of the K12 capsule containing 5,7-di-N-acetylacinetaminic acid from Acinetobacter baumannii isolate D36

The repeat unit of the K12 capsular polysaccharide isolated from the Acinetobacter baumannii global clone 1 clinical isolate, D36, was elucidated by means of chemical and spectroscopical methods. The structure was shown to contain N-acetyl-D-galactosamine (D-GalpNAc), N-acetyl-D-fucosamine and N-acetyl-L-fucosamine linked together in the main chain, with the novel sugar, 5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-L-altro-non-2-ulosonic acid (5,7-di-N-acetylacinetaminic acid or Aci5Ac7Ac), attached to D-GalpNAc as a side branch. This matched the sugar composition of the K12 capsule and the genetic content of the KL12 capsule gene cluster reported previously. D-FucpNAc was predicted to be the substrate for the initiating transferase, ItrB3, with the Wzy polymerase making a α-D-FucpNAc-(1 → 3)-D-GalpNAc linkage between the repeat units. The three glycosyltransferases encoded by KL12 are all retaining glycosyltransferases and were predicted to form specific linkages between the sugars in the K12 repeat unit.

Amelioration of soil compaction can take 5 years on a Vertisol under no till in the semi-arid subtropics

Heavy wheel traffic causes soil compaction, which adversely affects crop production and may persist for several years. We applied known compaction forces to entire plots annually for 5 years, and then determined the duration of the adverse effects on the properties of a Vertisol and the performance of crops under no-till dryland cropping with residue retention. For up to 5 years after a final treatment with a 10 Mg axle load on wet soil, soil shear strength at 70-100 mm and cone index at 180-360 mm were significantly (P < 0.05) higher than in a control treatment, and soil water storage and grain yield were lower. We conclude that compaction effects persisted because (1) there were insufficient wet-dry cycles to swell and shrink the entire compacted layer, (2) soil loosening by tillage was absent and (3) there were fewer earthworms in the compacted soil. Compaction of dry soil with 6 Mg had little effect at any time, indicating that by using wheel traffic only when the soil is dry, problems can be avoided. Unfortunately such a restriction is not always possible because sowing, tillage and harvest operations often need to be done when the soil is wet. A more generally applicable solution, which also ensures timely operations, is the permanent separation of wheel zones and crop zones in the field--the practice known as controlled traffic farming. Where a compacted layer already exists, even on a clay soil, management options to hasten repair should be considered, e.g. tillage, deep ripping, sowing a ley pasture or sowing crop species more effective at repairing compacted soil.

Sekä että : Ironia koherenssina ja inkoherenssina

The interpretation of irony in this study is seen as being crucially dependent on the notion of coherence. Coherence depends on a complex interplay of contextual features, which is why all interpretations must be seen as socio-cultural processes. An utterance is perceived as coherent if it makes sense and if it hangs together. Incoherent utterances can result in an ironic interpretation; however, the incoherence must also be perceived as being intentional, and intentionality in turn is a sign of the ironist's rejecting stance. The study does not encompass the notion of irony of fate nor situational irony that is unintentional. Irony is defined in this study as a combination of five components. It is seen as (1) a negative attitude that reflects (2) the intention of the ironist, and (3) has a target and most often (4) a victim too. Essential to irony is its fifth component, the fact that one or more of these four components must be inferred from co- or context. The componential definition of irony is crucial in deciding whether an interpretation is ironic or not, and the definition makes it possible to discern the differences as well as the similarities between different kinds of irony. The method of the study is experimental: 12 Finnish newspaper texts that could be considered to be ironic were interpreted by 107 informants. The interpretation of one of the texts was based on unelicited feedback given by readers of a weekly magazine. The responses were analyzed to determine (a) whether the texts were perceived as being coherent or incoherent and (b) whether the informants appealed to any of the five components of irony. The results of the analyses of the informants' responses indicate that differences between the ironic and non-ironic interpretations of the texts can be explained in terms of whether or not the informant regarded the text as being coherent. The thesis also discusses the shortcomings of other accounts of irony: the Gricean theory of conversational implicature, speech act theory, irony as rhetoric, irony as pretense, irony as echoic mention, and irony as framing. In contrast to these other accounts, the study focuses on irony as a textual phenomenon and underlines the importance of socio-cultural context in the interpretation of irony. Key words: irony, coherence, incoherence, the componential definition of irony, interpretation of linguistic utterances.

5,7-Dimethoxy-2-phenyl-4H-chromen-4-one

The asymmetric unit of the title compound, C17H14O4, contains two independent molecules which differ in the relative orientations of the phenyl rings with repect to the essentially planar [maximum deviations of 0.029 (2) and 0.050 (2) angstrom in the two molecules] chromene fused-ring system, forming dihedral angles of 10.3 (5) and 30.86 (5)degrees in the two molecules. The crystal structure is stabilized by weak C-H center dot center dot center dot O and C-H center dot center dot center dot pi interactions, and pi-pi stacking interactions.

Chlorine NQR in 3-amino-2-chloropyridine and 2-chloro-5-nitropyridine

Temperature dependence of 35Cl nuclear quadrupole resonance (NQR) frequencies has been studied in 3-amino-2-chloropyridine and 2-chloro-5-nitropyridine from 77 to 298 K. The data were analysed and the torsional frequencies regarding internal motions in the molecules evaluated in the above temperature range using Bayer's theory and Brown's method.

Rapid and sensitive detection of Avibacterium paragallinarum in the presence of other bacteria using a 5' Taq nuclease assay: A new tool for diagnosing infectious coryza

A 5' Taq nuclease assay specific for Avibacterium paragallinarum was designed and optimized for use in diagnosing infectious coryza. The region chosen for assay design was one of known specificity for Av. paragallinarum. The assay detected Av. paragallinarum reference strains representing the three Page and the eight Kume serovars, and field isolates from diverse geographical locations. No cross-reactions were observed with other Avibacterium species, with other bacteria taxonomically related to Av. paragallinarum nor with bacteria and viruses likely to be present in swabs collected from suspected infectious coryza cases. The detection limit for the assay was 6 to 60 colony-forming units per reaction. Twenty-two out of 53 swabs collected from sick birds reacted in the 5' Taq nuclease assay, whereas Av. paragallinarum was not isolated from any of the swabs. All of the 22 swabs yielded other bacteria in culture. The presence of Av. paragallinarum in the swabs was also demonstrated by sequencing, thereby confirming the ability of the assay to detect Av. paragallinarum in the presence of other bacteria. The ability to quantify bacterial load in the swabs using the 5' Taq nuclease assay was demonstrated.

Measurement of Turbulence and pitch of the airstream in the 5'* 7' tunnel of Indian Institute of Science

Abstract is not available.