Bayesian inference of population expansions in domestic bovines

< p > The past population dynamics of four domestic and one wild species of bovine were estimated using Bayesian skyline plots, a coalescent Markov chain Monte Carlo method that does not require an assumed parametric model of demographic history. Four dom

Dentin phosphoprotein frameshift mutations in hereditary dentin disorders and their variation patterns in normal human population

Background: Dentin phosphoprotein ( DPP) is the most abundant non-collagenous protein in dentin, which is highly phosphorylated and plays key roles in dentin biomineralisation. The aetiology of isolated hereditary dentin disorders in most affected familie

A common SNP of MCPH1 is associated with cranial volume variation in Chinese population

Microcephaly (MCPH) genes are informative in understanding the genetics and evolution of human brain volume. MCPH1 and abnormal spindle-like MCPH associated (ASPM) are the two known MCPH causing genes that were suggested undergone recent positive selectio

Use of allozyme markers to determine the genetic structure of hatchery population of Thai pangas, Pangasius hypophthalmus of Jessore, Bangladesh

Genetic structure of hatchery population of Thai pangas (Pangasius hypophthalmus) of Jessore region, Bangladesh has been investigated from 1 January 2004 to 31 December 2004. Samples for this study were collected from five fish hatcheries viz. Asrom, Banchte Shekha, Chowdhury, Maola and Rezaul Haque. The enzymes were encoded by 15 gene loci: Adh-1*, Est-1*, G3pdh-2*, Gpi-1*, Gpi-2*, Idhp-1*, Idhp-2*, Ldh-1*, Ldh-2*, Mdh-1*, Mdh-2*, Pgm*, Sdh-1*, Sdh-2* and Sod*. Among them four (Est-1*, G3pdh-2*, Gpi-2*and Pgm*) were found to be polymorphic in different populations but only Gpi-2* was polymorphic in all the sampled populations. The mean proportion of polymorphic loci per population was the highest (26.7%) in Banchte Shekha hatchery while the mean proportion of heterozygous loci was 13.33% per individual in Banchte Shekha and Maola hatcheries. The UPGMA dendrogram of Nei's (1972) genetic distances indicated a relationship between the genetic distance and geographical difference. High genetic variability in stocks of Thai pangas was observed in the Banchte Shekha and Maola hatcheries and less variability was found in the other three hatcheries.

Population dynamics and the management of the goat fish Upenaeus sulphureus from the Bay of Bengal

FiSAT program was used to estimate population parameters of Upenaeus sulphureus from length frequency data. Loc and K were found to be 22.7 em and 0.98 year1 respectively. The Wetherall plot provided an estimate of L= and Z/K were 21.585 em and 4.759 respectively. The annual rate of natural and fishing mortality were estimated as 1.91 and 3.86 respectively. The exploitation rate was 0.668. The selection pattern Lc was 10.824 em. Recruitment pattern suggest of two uneven seasonal pulses in March-April and August-October. Peaks appeared in August-October. Maximum yield could be achieved simultaneously increasing length at first capture to 10.0 em. The length weight relationship was found to be W =0.03065 Lz.8328. Highest yield and price could be achieved by decreasing the fishing mortality to 0.9 coefficient rate.

Population dynamics of two jewfishes Jhonius argentatus and Johnieops vogleri) in the coastal waters of Bay of Bengal, Bangladesh

Population parameters of Jhonius argentatus and Johnieops vogleri in coastal waters of Bay of Bengal, Bangladesh were estimated by using FiSAT programme. The von Bertalanffy growth parameters, extreme length (cm) and growth constant K (year ·1) were found to be 46.50 and 0.59 for J. argentatus, and 33.50 and 0.85 for J.vogleri The Loc(cm) and Z/K estimates provided by Wetherall plot were 46.694 and 1.791 for J. argentatus, and 31.25 and 2.623 for J. vogleri. The annual rate of natural (M) and fishing mortality (F) were estimated as 1.12 and 0.78 for J. argentatus, and 1.56 and 1.28 for J. vogleri. Rate of exploitation (E) was estimated as 0.41 for J. argentatus and 0.45 for J. vogleri. About 80.04% of J. argentatus were found to be recruited during peak pulses (April-May) and 19.96% during lean pulses (October-November) and 85.75% J. vogleri during peak pulses (May-July) and 14.25% during lean pulses (September-October). The growth performance index(') was 3.11 for J. argentatus and 1.93 for J. vogleri. The total length and body weight relationship was found to be W = 0.0403 TL25723 for J. argentatus and W = 0.0907 TV3482 for J. vogleri.

Population dynamics and the management of the Indian mackerel Rastrelliger kanagurta from the Bay of Bengal

FiSAT program was used to estimate population parameters of Rastrelliger kanagurta from length frequency data. Loc and K were found to be 27.4 em and 0.90 year1 respectively. The Wetherall plot provided an estimate of Loc and Z/K were 26.7 cm and 4.683 respectively. The annual rate of natural and fishing mortality were estimated as 1.71 and 3.21 respectively. The exploitation rate was 0.652. The selection pattern L50 was 18.09 cm. Recruitment pattern suggests two seasonal pulses one in March-May and another in September-October. Peak recruitment appeared in March-May. Maximum yield could be achieved by decreasing length at first capture to 13.0 em. The relationship between total length and body weight was found to be W = 0.01583 L8952. Yield and stock prediction analysis suggested that highest yield and price could be achieved by decreasing the fishing mortality to 2.0 coefficient rate.

Fishery, population characteristics and stock assessment of cuttlefishes, Sepia aculeata and Sepia pharaonis at Kakinada along the east coast of India

Cuttlefishes were exploited exclusively by trawls along the coast. Growth, recruitment, mortality and exploitation rates of Sepia aculeata and Sepia pharaonis were studied. Fishery of the former was supported mainly by zero year and the latter by zero and one + age groups. Both attain sexual maturity during the first year itself and spawn during August-March with peak during November-December. Natural mortality of S.aculeata was 2.22, fishing mortality 2.34 and total mortality 4.56. It was 1.69, 1.97 and 3.66 respectively for S.pharaonis. Exploitation rate was 0.52 and Emax 0.72 for S.aculeata and it was 0.54 and 0.76 respectively for S.pharaonis. Their mortality and exploitation rates indicated that stock remains under-exploited and have considerable scope for improving the production. However, both stock and catch exhibited wide annual fluctuation with declining trend during the period. These necessitated immediate attention including measures to minimise juvenile exploitation for improving stock and fishery.

Population dynamics of killifish Aphanius dispar (Ruppel) in Sandspit area off Karachi

Growth and mortality parameters of Aphanius dispar a cyprinoides generally observed in the catches of near shore area were estimated from the length frequency data collected from Sandspit area of Karachi, using LFSA. The von Bertalanffy growth parameters were estimated as Loo=71.73 mm & K=L35/yr for Male Aphanius dispar and Loo=70.66 & K=l.41 for female. Total Mortality coefficient (Z) was estimated using Length converted catch curve which is equal to 2.12/yr, for male and for female 2.19/yr. Natural mortality (M) was estimated by Pauly's empirical formula: M=l.64/yr (male) and 1.70/yr (female). The species also displayed two cohorts a year.

Population structure of the grapsid crab, Helice tridens latimera (PARISI) in the Taiho mangrove, Okinawa, Japan

Grapsid crab Helice tridens latimera inhabiting mangroves, seashores as well as muddy and rocky areas. Ovigerous females were observed from December to May. Juveniles appeared in July and from December to April. In the laboratory they reached 9.50 mm in carapace width 4 months after hatching. It is likely that spawning of this crab occurs throughout the year.

A markov chain Monte Carlo method for estimating population mixing using Y-chromosome markers: Mixing of the Han people in China

We present a new approach for estimating mixing between populations based on non-recombining markers, specifically Y-chromosome microsatellites. A Markov chain Monte Carlo (MCMC) Bayesian statistical approach is used to calculate the posterior probability

Dynamics of parasite population and its histopathological and histophysiological effects in the stomach of a freshwater fish

The caryophyllaeid cestode Lytocestoides fossilis infects the freshwater catfish Heteropneustes fossilis. The study was conducted for two consecutive years (2004-06) to record the bio-statistical data of the parasite. The incidence, intensity, density and index of infection of the parasite have been recorded. The infection was more during June to September, moderate during February to May and low during October to January. The parasite brought about severe histopathological changes in the stomach of infected fish. The changes observed in the stomach of fish included structural damage of the villi, inflammation, and fibrosis associated with hyperplasia and metaplasia. The hypertrophy of mucous layer led to vacuolation and necrosis. Histochemical changes were noticed with enhanced carbohydrate, protein and lipid contents. The enhanced substrate content in the infected organ might be due to the disfunctioning of the digestive tract, which results in the accumulation of various metabolites. Mucus secretion was triggered as a protective interaction against parasitic invasion. The parasitic infection affects the general metabolic state of the host and as the result, the fish becomes sluggish and moribund.

Population dynamics of a cladoceran zooplankter, Daphnia magna, in two poultry-cum-fish (duck-fish and chicken-fish) integrated ponds

The population dynamics of Daphnia magna was studied in two integrated fish-cum-poultry ponds (duck-fish and chicken-fish). The seasonal changes in the population of D. magna were recorded. Peak population of the zooplankter was recorded in the month of January in both ponds. The birth rate (b), growth rate (r) and death rate {d) of D. magna were studied in field as well as in the laboratory. Three temperatures and three different food concentrations were selected for laboratory study. The maximum values of (b) and (r) were recorded during December-January in field. Under laboratory conditions, highest birth and death rate occurred at lowest temperature (15 °C). Both food and temperature were found to affect the population dynamics of the species; longest life span and maximum population were recorded at lowest temperature and maximum food concentration.

Cadmium leachability and microbial population dynamics in a stabilized and bioaugmented model contaminated soil

This article presents a laboratory study on the consequences of the application of combined soil stabilization and bioaugmentation in the remediation of a model contaminated soil. Stabilization and bioaugmentation are two techniques commonly applied independently for the remediation of heavy metal and organic contamination respectively. However, for a cocktail of contaminants combined treatments are currently being considered. The model soil was contaminated with a cocktail of organics and heavy metals based on the soil and contaminant conditions in a real contaminated site. The soil stabilization treatment was applied using either zeolite or green waste compost as additives and a commercially available hydrocarbon degrading microbial consortium was used for the bioaugmentation treatment. The effects of stabilization with or without bioaugmentation on the leachability of cadmium and copper was observed using an EU batch leaching test procedure and a flow-through column leaching test, both using deionized water at a pH of 5.6. In addition, the population of hydrocarbon degrading microorganisms was monitored using a modified plate count procedure in cases where bioaugmentation was applied. It was found that while the stabilization treatment reduced the metal leachability by up to 60%, the bioaugmentation treatment increased it by up to 100% Microbial survival was also higher in the stabilized soil samples.