Oceanographic observations from the eastern Pacific Ocean collected by the R/V Shoyo Maru, October 1963 – March 1964

ENGLISH: The Nankai Regional Fisheries Research Laboratory of Kochi, Japan conducted a long-line fishery exploration and hydrographic survey in the eastern Pacific Ocean aboard the R/V Shoyo Maru during October 1963- March 1964. An invitation to the Inter-American Tropical Tuna Commission to participate in the cruise gave its investigators the opportunity to make surface biological observations and to preserve water samples for subsequent analyses of nutrients. The result of this survey is a comprehensive body of physical, chemical and biological data covering a large portion of the eastern half of the Pacific Ocean. SPANISH: El Nankai Regional Fisheries Research Laboratory de Rochi, Japón, llevó a cabo una exploración pesquera con palangre y un reconocimiento hidrográfico en el Océano Pacífico oriental, a bordo del barco de investigación Shoyo Maru, desde octubre de 1963 hasta marzo de 1964. Una invitación dirigida a la Comisión Interamericana del Atún Tropical para participar en el crucero, confirió a sus investigadores la oportunidad de hacer observaciones biológicas superficiales y conservar muestras de agua para el subsiguiente análisis de los nutrientes. El resultado de este reconocimiento es un conjunto de datos físicos, químicos y biológicos que abarcan una gran parte del sector medio oriental del Océano Pacífico. (PDF contains 153 pages.)

Biologically-inspired data decorrelation for hyper-spectral imaging

Hyper-spectral data allows the construction of more robust statistical models to sample the material properties than the standard tri-chromatic color representation. However, because of the large dimensionality and complexity of the hyper-spectral data, the extraction of robust features (image descriptors) is not a trivial issue. Thus, to facilitate efficient feature extraction, decorrelation techniques are commonly applied to reduce the dimensionality of the hyper-spectral data with the aim of generating compact and highly discriminative image descriptors. Current methodologies for data decorrelation such as principal component analysis (PCA), linear discriminant analysis (LDA), wavelet decomposition (WD), or band selection methods require complex and subjective training procedures and in addition the compressed spectral information is not directly related to the physical (spectral) characteristics associated with the analyzed materials. The major objective of this article is to introduce and evaluate a new data decorrelation methodology using an approach that closely emulates the human vision. The proposed data decorrelation scheme has been employed to optimally minimize the amount of redundant information contained in the highly correlated hyper-spectral bands and has been comprehensively evaluated in the context of non-ferrous material classification

Características antropométricas, condición física y velocidad de lanzamiento en balonmano de élite y amateur

166 p.

Membrane Deformability and Membrane Tension of Single Isolated Mitochondria

Mitochondria dynamics is crucial to many biological processes such as mitochondria fusion and fission, which is highly correlated to the mechanics of single mitochondria. However, the mechanobiological coupling of mitochondria has been poorly understood. Here membrane deformability and membrane tension of individual mitochondria isolated from MtDsRed labeled human embryonic T-Rex-293 kidney cells were measured using a micropipette aspiration assay. The results demonstrated that membrane deformation of isolated mitochondria exhibited an elastic transition phase followed by an equilibrium phase, and mitochondrial membrane tension was proportional to the area compressibility. It was also indicated that mitochondrial membrane deformability was significantly affected by physical chemical factors such as osmotic pressure or pH value, and was further correlated to mitochondrial functionality in different respiratory states and Ca2+ regulation. These findings provide a new insight into understanding the mechanical regulation of mitochondrial physiology.

Limnology in relation to fisheries in Tanzanian waters

The study of limnology is important to understand ecosystem dynamics and the ecological basis for fish production in the Lake Victoria which is important for fisheries resources use, planning and management. Physical, chemical and biological parameters are important and known to influence fish population production. Energy fixed by primary producers, e.g. algae, is transfered to higher trophic levels, e.g fish. Factors which influence the dynamics of phytoplankton and zooplankton population, e.g nutrient availability and uptake, growth rate, species composition and biomass, ultimately affect fish production. The commercial fisheries of Lake Victoria consists mainly of piscivorous Lates niloticus (L>), algivorous Oreochromis niloticus (L.) and zooplanktivorous Rastrineobola argentea (Pellegrin)

Computational design of self-assembling proteins and protein-DNA nanowires

Computational protein design (CPD) is a burgeoning field that uses a physical-chemical or knowledge-based scoring function to create protein variants with new or improved properties. This exciting approach has recently been used to generate proteins with entirely new functions, ones that are not observed in naturally occurring proteins. For example, several enzymes were designed to catalyze reactions that are not in the repertoire of any known natural enzyme. In these designs, novel catalytic activity was built de novo (from scratch) into a previously inert protein scaffold. In addition to de novo enzyme design, the computational design of protein-protein interactions can also be used to create novel functionality, such as neutralization of influenza. Our goal here was to design a protein that can self-assemble with DNA into nanowires. We used computational tools to homodimerize a transcription factor that binds a specific sequence of double-stranded DNA. We arranged the protein-protein and protein-DNA binding sites so that the self-assembly could occur in a linear fashion to generate nanowires. Upon mixing our designed protein homodimer with the double-stranded DNA, the molecules immediately self-assembled into nanowires. This nanowire topology was confirmed using atomic force microscopy. Co-crystal structure showed that the nanowire is assembled via the desired interactions. To the best of our knowledge, this is the first example of a protein-DNA self-assembly that does not rely on covalent interactions. We anticipate that this new material will stimulate further interest in the development of advanced biomaterials.

The importance of organic detritus in lotic ecosystems: Aspects of trophic interactions

Very little research has been carried out on detrital energetics and pathways in lotic ecosystems. Most investigations have concentrated on the degradation of allochthonous plant litter by fungi, with a glance at heterotrophic bacteria associated with decaying litter. In this short review, the author describes what is known of the detrition of plant litter in lotic waters, which results from the degradative activities of colonising saprophytic fungi and bacteria, and goes on to relate this process to those invertebrates that consume coarse and/or fine particulate detritus, or dissolved organic matter that aggregates into colloidal exopolymer particles. It is clear that many of the key processes involved in the relationships between the physical, chemical, biotic and biochemical elements present in running waters are very complex and poorly understood. Those few aspects for which there are reliable models with predictive power have resulted from data collections made over periods of 20 years or more. Comprehensive research of single catchments would provide a fine opportunity to collect data over a long period.

Temporary ponds in the UK; a critical biodiversity resource for freshwater plants and animals

The importance of ponds for biodiversity in Britain has been demonstrated by a number of studies. However, most of the research and interest has been directed at permanent waterbodies, and temporary ponds have been largely neglected. In this article the author present some preliminary findings from a project which aims to fill some of the many gaps in our knowledge of temporary ponds in Britain. The project, which runs for three years until the end of 2001, aims specifically to investigate the ecology of temporary ponds in England and Wales by describing (i) their wetland plant and macroinvertebrate communities, (ii) their physico-chemical characteristics, and (iii) their value as a biodiversity resource. The article focuses on the assessment of temporary ponds as a biodiversity resource and briefly considers aspects of species richness, rarity and distinctiveness. Where possible, temporary ponds are compared with other waterbody types, mainly permanent ponds from the National Pond Survey (NPS), to give the results a broader context.

Fish zoning of some watercourses in Normandy [Translation from: Verhandlungen der Internationalen Vereinigung fuer Theoretische und Angewandte Limnologie 18, 1135-1146, 1972]

The identification of fish zones in western and central Europe has been the objective some major studies. This paper concerns a stream in Normandy specially studied by the author in 1969 and 1970 in the framework of a study on the role of the mean temperature in fish zoning. The paper propounds the comparative study of the morphodynamic and occasionally physico-chemical characteristics, as well as the results of previous sampling by electric fishing of the fish populations of two other streams of the higher Cretaceous layer and supplied by ”chalky” water in Normandy and Picardy.

Calcareous concretions in the Levriere (tributary of the Epte, secondary tributary of the Seine, Eure department) [Translation from: Bull.Ass.fr.Etud.Quaternaire 1973(2), 79-87, 1973]

From research carried, out on a section of the Levriere, concretions (granules, nodules, which were sometimes joined together) partly covering the river ”bottom” were observed. The authors propose to make besides a petrographic examination of the calcareous precipitations and to see if their origin is connected to a biological activity, or if it is purely a case of a physical-chemical precipitation. The hydrological background of the Levriere, a small river of the Normandy Vexin, is given and conditions of the formation of the concretions studied.

Profile soundings in lakes of the younger morainal area of Sleswick-Holstein with a sediment-echo-sounder of 30 kHz [Translation from: Wass.Boden 26, 135-138, 1974]

To be able to carry out physical, chemical and biological investigations on a lake, one needs a thorough knowledge of the volume of water and the shape of the lake basin. Little is known about the about the morphology of the lakes in Schleswig-Holstein and its ecological consequences. For this research a 30 KHz echo sounder with sediment transceiver was used to carry out profile determinations (echo soundings). This apparatus continuously records on paper the different reflexions and absorptions of the sediment and water body in the corresponding depth. By this, acoustically noticeable layers and different densities in the sediment and 'scattering layers' in the water body due to physical, chemical and biological reasons (e.g. plans and single fish) are made visible. Result are summarised here regarding the echo soundings in Blunker See.

Estudo físico-químico de copoliéteres por viscosimetria

A viscosimetria é um procedimento experimental simples e pouco oneroso, que pode fornecer informações valiosas sobre o volume hidrodinâmico e a conformação de macromoléculas em solução, num determinado solvente, em uma dada temperatura. Os parâmetros viscosimétricos podem ser matematicamente calculados por extrapolação gráfica, cuja execução experimental é mais demorada. Em contrapartida, é possível que a determinação seja feita por um único ponto. Neste trabalho, os dois métodos de cálculo, empregando uma série de seis equações: Huggins, Kraemer e Schulz-Blaschke, por extrapolação gráfica, e Schulz-Blaschke, Solomon-Ciuta e Deb-Chanterjee por um único ponto, foram utilizados em soluções de poli(glicol propilênico) (PPG) e copolímeros em bloco à base de poli(glicol propilênico) e poli(glicol etilênico) (EG-b-PG), com diferentes teores de poli(glicol etilênico), tendo isopropanol, tetra-hidrofurano (THF) e tolueno como solventes puros, além das misturas em proporções iguais de THF/ isopropanol e THF/ tolueno, a 25C. Os valores de viscosidade intrínseca e de algumas constantes indicaram que os solventes puros e as misturas se apresentaram no limite entre o bom e o mau solvente. Verificou-se também que o método de cálculo por um único ponto foi válido, especialmente quando a equação de Schulz-Blaschke foi empregada, apresentando um baixo percentual de erro sendo possível assim reduzir o tempo de análise para a maioria dos sistemas estudados

SAQUA - sistema baseado em software livre para análise do comportamento da qualidade das águas fluviais: aplicado à bacia do rio Paraíba do Sul.

Nesta dissertação foi desenvolvido o sistema SAQUA (Sistema para Análise da Qualidade das Águas Fluviais), que permite o acompanhamento dos dados de séries históricas de parâmetros físico-químicos para análise da qualidade de águas fluviais. A alimentação do sistema SAQUA se dá a partir do arquivo tipo texto gerado no Hidroweb, sistema de banco de dados hidrológicos da ANA (Agência Nacional de Águas), disponibilizado na internet. O SAQUA constitui uma interface que permite a análise espaço-temporal de parâmetros de qualidade da água específicos definidos pelo usuário. A interface foi construída utilizando o servidor de mapas Mapserver, as linguagens HTML e PHP, além de consultas SQL e o uso do servidor Web Apache. A utilização de uma linguagem dinâmica como o PHP permitiu usar recursos internos do Mapserver por meio de funções que interagem de forma mais flexível com códigos presentes e futuros, além de interagir com o código HTML. O Sistema apresenta como resultado a representação gráfica da série histórica por parâmetro e, em mapa, a localização das estações em análise também definidas pelo usuário, geralmente associadas a uma determinada região hidrográfica. Tanto na representação gráfica da série temporal quanto em mapa, são destacados a partir de código de cores a estação de monitoramento e a observação em que os limites estabelecidos na resolução CONAMA 357/05 não foi atendido. A classe de uso da resolução CONAMA que será usada na análise também pode ser definida pelo usuário. Como caso de estudo e demonstração das funções do SAQUA foi escolhida a bacia hidrográfica do rio Paraíba do Sul, localizada na região hidrográfica Atlântico Sudeste do Brasil. A aplicação do sistema demonstrou ótimos resultados e o potencial da ferramenta computacional como apoio ao planejamento e à gestão dos recursos hídricos. Ressalta-se ainda, que todo o sistema foi desenvolvido a partir de softwares disponibilizados segundo a licença GPL de software livre, ou seja, sem custo na aquisição de licenças, demonstrando o potencial da aplicação destas ferramentas no campo dos recursos hídricos.

Experiments using an artificial stream to investigate the seasonal growth of chalk-stream algae

Research into the production ecology of chalk streams using a large artificial recirculating stream is described. Physical chemical processes including calcium and inorganic phosphate levels, and exchange of gaseous carbon dioxide in both a simple closed system and a circulating system with gravel substrate have been monitored in both light and dark conditions. Further experiments were concerned with the seasonal changes in algal growth over the gravel substrate with constant water velocities and replenishment. The algal population, composed mainly of the diatoms Achnanthes minutissima, Meridion circulare, Nitzschia fonticola and Synedra ulna reached a peak in mid May and declined rapidly during June. Concentrations of phosphate phosphorus fell as the diatoms grew but was not thought to limit growth. Silicate concentrations followed the diatom cycle closely but never fell below 0.8 mg/l Si. It is possible that one of the nutrients may have been limiting the rate of growth due to steep diffusion gradients through the algal mat. In the last summer and autumn a hard calcareous crust composed of the green alga Gongrosira incrustans and the blue green alga Homeothrix varians , developed. The channel stream is compared with the natural conditions found in chalk streams.