商陆抗真菌蛋白的基因克隆及其应用

商陆种子的7kD多肽被鉴定为一种抗真菌多肽，命名为PAFP（pokeweed antifungal protein）。它抑制Trichoderma viride, Fusatium及其它一些病原真菌的生长。本文构建了cDNA文库，而后从库中筛选和克隆PAFP基因。PAFP的编码序列－－201bp的DNA片段被扩增并插入pBluescript SK+载体。经酶切图谱分析和核苷酸顺序测定之后，这个片段与35S启动子连接并重组于双元载体pBin 19。此表达载体质粒转入农杆菌LBA 4404供转化植物之用。通过农杆菌介导的对西瓜的转化，所采用的基因还包括报告基因GUS和Bar，以及一种来自大麦的抗真菌蛋白的基因。以PCR扩增，GUS与NPT II活性检测，以及Southern杂交对转基因植物进行鉴定。

Wave digital filter model of the entire auditory periphery

A model of the auditory periphery assembled from analog network submodels of all the relevant anatomical structures is described. There is bidirectional coupling between networks representing the outer ear, middle ear and cochlea. A simple voltage source representation of the outer hair cells provides level-dependent basilar membrane curves. The networks are translated into efficient computational modules by means of wave digital filtering. A feedback unit regulates the average firing rate at the output of an inner hair cell module via a simplified modelling of the dynamics of the descending paths to the peripheral ear. This leads to a digital model of the entire auditory periphery with applications to both speech and hearing research.

南海北部区域表层水微生物多样性及其分布特点研究

海洋中的微生物多样性是十分丰富的。南海北部区域表层水的微生物群落结构及物种多样性情况仍不十分清楚。本研究，采用构建基因克隆文库的方法，对该区域内表层水中的微生物多样性及分布特点进行研究。获得了8000多个细菌16S rDNA基因、真核微生物ITS 区基因及光合微型生物 psbA 基因单克隆。本研究结果表明：在南海北部区域表层水中存在两种不同微生物类群，即近海岸带海洋微生物类群和开阔海域海洋微生物类群。 16S rDNA基因克隆文库中，确定了507个OTUs。93.7% 的16S rDNA 序列定义在同一种水平上，1.4 %的16S rDNA序列定义在同一属的水平上，2.7%的16S rDNA序列定义在同一纲的水平上，1.2%的16S rDNA序列定义在同一门的水平上。值得一提的是有0.7%的南海表层水样品的16S rDNA 序列，属于目前数据库中的未知序列。系统育树分析表明这类序列可归属于4个不同的分枝群。与Venter’s Sorcerer II 海洋科考（马尾岛海域）的结果不同，南海北部区域表层水中，并没有发现SAR11分支细菌、丝状杆菌（Fibrobacter）和Rheinheimera细菌序列，但南海北部区域却发现了马尾岛海域未检测到的物种，如酸杆菌门、恐球菌-栖热菌门、厚壁菌门，硝化螺旋菌门，浮霉菌门以及疣微菌类细菌。除疣微菌外，其他5种细菌都是海洋环境样品中较为常见的细菌。变形菌门、蓝细菌及厚壁菌门细菌序列是南海北部表层样品16S rDNA基因克隆文库中的主要类群。 真核生物如浮游植物和海洋真菌是海洋表面生物质的主要组成部分之一。现有的研究多集中在环境样品的原核微生物的群落结构研究上，很少关注海洋微型真核生物的多样性及群落结构分布。本研究通过构建ITS基因克隆文库的方法，得到了3044条ITS序列，最终定义了1288个OTUs。其中，329个OTUs序列定义在同一种水平上，310个OTUs序列定义在同一属或纲的水平上，123个OTUs序列定义在同一门的水平上。值得注意的是有339个OTUs的序列，属于目前数据库中的未知序列。系统发育树分析表明它们分别归属于4个不同的分枝群。这表明以往对海洋真核微型生物的多样性仍知之甚少。盘菌亚门、体腔动物门和担子菌纲是南海北部表层样品ITS基因克隆文库中的主要类群。此外，在南海北部区域还发现了少数归属于绿藻、链形植物、定鞭金藻类、放射虫类、Stramenopiles、Typhlocoela、壶菌类、多孢囊霉目、子囊菌门、地位未定的物种、 酵母、领鞭毛虫门、不可培养的后生动物和海绵动物的ITS序列。 海洋初级生产力主要是依靠光合微型浮游生物进行光合作用完成的。利用新设计的psbA通用引物，对南海北部33个表层水样滤膜进行基因克隆文库建库分析，最终获得了南海北部区域表层水微生物多样性及其分布特点研究3062条部分psbA基因序列，并将其划分为957个 OTUs。其中蓝细菌和未培养的病毒序列在psbA基因库中的数量最多。本研究还发现了南海北部区域存在11个独立分支的新型psbA类群。研究证实psbA基因可以作为一种研究海洋光合微型浮游生物群落结构的指示基因。 克隆文库相似性分析发现，在所有的16S rDNA克隆文库中没有任意两个站点的克隆文库相似性超过50%。虽然N401和N420站点的16S rDNA克隆文库相似性最大，但它们在地理位置上并不接近。一些地理位置接近的站点，其16S rDNA克隆文库之间相似性比较接近。比如，海南岛区域的克隆文库之间就比较相似，且在同一分支。大多数地理环境相似的站点的16S rDNA克隆文库都聚在同一大分支上。例如，来自于珠江口区域站点的克隆文库之间的相似性比较接近，而且分布在一个大分支中；开阔海洋区域的16S rDNA克隆文库，也大多聚类在同一分支中。但也有例外的情况：比如 N107 和N400 站点的16S rDNA克隆文库，就聚类到一起，分析发现这两个文库中所处的环境都是甲烷产生区，其中都含有相似的与甲烷代谢相关的菌群。不过从整体来看，整个南海北部的细菌群落，大致分为两大类：中国大陆近海岸微生物群落和开阔海域微生物群落。33个ITS克隆文库的相似性分析发现：相似性在10%以下的类群，可以分成两大分支，而且该分类，比细菌群落的分布情况更接近南海北部的地理环境特征。对psbA基因克隆文库的相似性分析也验证了在南海北部区域表层水中存在两种不同微生物生态系统。 此外，本研究针对分子生态专业软件DOTUR程序在处理大量克隆文库数据时所遇到的

矢量合成移相器

本发明涉及一种矢量合成移相器，包括正交分相器、相加器；在正交分相器和相加器之间串接有两个可反相电控衰减器；本发明的移相范围宽、相位分辨率高、输出信号幅度起伏小。

Nonparametric mixtures of factor analyzers

The mixtures of factor analyzers (MFA) model allows data to be modeled as a mixture of Gaussians with a reduced parametrization. We present the formulation of a nonparametric form of the MFA model, the Dirichlet process MFA (DPMFA). The proposed model can be used for density estimation or clustering of high dimensiona data. We utilize the DPMFA for clustering the action potentials of different neurons from extracellular recordings, a problem known as spike sorting. DPMFA model is compared to Dirichlet process mixtures of Gaussians model (DPGMM) which has a higher computational complexity. We show that DPMFA has similar modeling performance in lower dimensions when compared to DPGMM, and is able to work in higher dimensions. ©2009 IEEE.

大蹼铃蟾皮肤膜联蛋白Ⅱ相关蛋白的分离纯化及活性

通过阴离子交换、凝胶过滤和阳离子交换层析, 从大蹼铃蟾皮肤中纯化到一个表观分子量为33 kDa 的单链蛋白。N - 末端序列比较分析显示, 该蛋白与来自非洲爪蟾、红色原鸡和人膜联蛋白Ⅱ的N - 末端序列 相同的氨基酸分别占70 %、64 %和56 %。该蛋白具有以钙依赖的方式抑制专一性血小板膜糖蛋白Ⅵ受体激动剂 ———Stejnulxin 诱导洗涤人血小板聚集的生物学功能, 最大抑制率达48 %。结合其N - 末端序列BLAST 搜索结 果及其活性的钙依赖性, 推测该蛋白是与膜联蛋白Ⅱ相关的一类蛋白质。

Influence of stocking density on the culture potential of freshwater catfish Pangasius pangasius in pond

Influence of stocking density on the production of freshwater catfish Pangasius pangasius with formulated feed in ponds was studied. The fish fry were collected from the Meghna river near Chandpur which is a natural breeding ground of this fish. Three stocking densities chosen during this experiment were 5000, 8000 and 11000 fry/ha with an initial weight of 42.57 ±2.51 g. The formulated feed was prepared in the laboratory which contained 45% fish meal, 30% mustard oil cake, 15% wheat bran and 10% rice bran to supply 40.48% protein in feed. The growth of P. pangasius in terms of net weight gain was 409.49, 266.49 and 236.37 g at the 5000/ha, 8000/ha and 11000/ha stocking densities respectively, which was statistically significant (p<0.05). High food conversion ratio (FCR) was also observed during this research study which ranged between 7.06 to 7.72. A production of 2.6 tons/ha at the stocking density of 11000/ha; 2.13 tons/ha at the stocking density of 8000/ha and 2.04 tons/ha at the stocking density of 5000/ha was obtained, while the growth of individual fish at the end of experiment was in opposite order. The result of this experiment indicates that stocking density has significant influence on the culture potential of freshwater catfish P.pangasius.

Diesel Cylinder Charge Properties: Feed-Forward Control and Cycle-by-Cycle Analysis Using an In-Cylinder Gas Sampling System

Common-rail fuel injection systems on modern light duty diesel engines are effectively able to respond instantaneously to changes in the demanded injection quantity. In contrast, the air-system is subject to significantly slower dynamics, primarily due to filling/emptying effects in the manifolds and turbocharger inertia. The behaviour of the air-path in a diesel engine is therefore the main limiting factor in terms of engine-out emissions during transient operation. This paper presents a simple mean-value model for the air-path during throttled operation, which is used to design a feed-forward controller that delivers very rapid changes in the in-cylinder charge properties. The feed-forward control action is validated using a state-of-the-art sampling system that allows true cycle-by-cycle measurement of the in-cylinder CO2 concentration. © 2011 SAE International.

Effects of soil fabric on behaviors of granular soils: Microscopic modeling

The effects of initial soil fabric on behaviors of granular soils are investigated by using Distinct Element Method (DEM) numerical simulation. Soil specimens are represented by an assembly of non-uniform sized spheres with different initial contact normal distributions. Isotropically consolidated triaxial compression loading and extension unloading in both undrained and drained conditions are simulated for vertically- and horizontally-sheared specimens. The numerical simulation results are compared qualitatively with the published experimental data and the effects of initial soil fabric on resulting soil behaviors are discussed, including the effects of specimen reconstitution methods, effects of large preshearing, and anisotropic characteristics in undrained and drained conditions. The effects of initial soil fabric and mode of shearing on the quasi-steady state line are also investigated. The numerical simulation results can systematically explain that the observed experimental behaviors of granular soils are due principally to their conditions of the initial soil fabric. This outcome provides insights into the observed phenomena in microscopic view. © 2011 Elsevier Ltd.

Simulation of solitary wave impact on coastal structures using weakly compressible and incompressible SPH methods

In this paper, we engage a Lagrangian, particle-based CFD method, named Smoothed Particle Hydrodynamic (SPH) to study the solitary wave motion and its impact on coastal structures. Two-dimensional weakly compressible and incompressible SPH models were applied to simulate wave impacting on seawall and schematic coastal house. The results confirmed the accuracy of both models for predicting the wave surface profiles. The incompressible SPH model performed better in predicting the pressure field and impact loadings on coastal structures than the weakly compressible SPH model. The results are in qualitatively agreement with experimental results. Copyright © 2011 by the International Society of Offshore and Polar Engineers (ISOPE).

Co-expression of CD173 (H2) and CD174 (Lewis Y) with CD44 suggests that fucosylated histo-blood group antigens are markers of breast cancer-initiating cells

Histo-blood group antigens CD173 (H2) and CD174 (Lewis Y) are known to be developmentally regulated carbohydrate antigens which are expressed to a varying degree on many human carcinomas. We hypothesized that they might represent markers of cancer-initiating cells (or cancer stem cells, CSC). In order to test this hypothesis, we examined the co-expression of CD173 and CD174 with stem cell markers CD44 and CD133 by flow cytometry analysis, immunocytochemistry, and immunohistochemistry on cell lines and tissue sections from breast cancer. In three breast cancer cell lines, the percentage of CD173(+)/CD44(+) cells ranged from 17% to > 60% and of CD174(+)/CD44(+) from 21% to 57%. In breast cancer tissue sections from 15 patients, up to 50% of tumor cells simultaneously expressed CD173, CD174, and CD44 antigens. Co-expression of CD173 and CD174 with CD133 was also observed, but to a lesser percentage. Co-immunoprecipitation and sandwich ELISA experiments on breast cancer cell lines suggested that CD173 and CD174 are carried on the CD44 molecule. The results show that in these tissues CD173 (H2) and CD174 (LeY) are associated with CD44 expression, suggesting that these carbohydrate antigens are markers of cancer-initiating cells or of early progenitors of breast carcinomas.