Zmienność genetyczna, specyficzność żywicielska i zdolność do przenoszenia wirusa mozaiki smugowatej pszenicy (WSMV) w obrębie kompleksu gatunków Aceria tosichella

Wydział Biologii: Instytut Biologii Środowiska

Integration of virus-like particle macromolecular bioreceptors in electrochemical biosensors

Rapid, sensitive and selective detection of chemical hazards and biological pathogens has shown growing importance in the fields of homeland security, public safety and personal health. In the past two decades, efforts have been focusing on performing point-of-care chemical and biological detections using miniaturized biosensors. These sensors convert target molecule binding events into measurable electrical signals for quantifying target molecule concentration. However, the low receptor density and the use of complex surface chemistry in receptors immobilization on transducers are common bottlenecks in the current biosensor development, adding to the cost, complexity and time. This dissertation presents the development of selective macromolecular Tobacco mosaic virus-like particle (TMV VLP) biosensing receptor, and the microsystem integration of VLPs in microfabricated electrochemical biosensors for rapid and performance-enhanced chemical and biological sensing. Two constructs of VLPs carrying different receptor peptides targeting at 2,4,6-trinitrotoluene (TNT) explosive or anti-FLAG antibody are successfully bioengineered. The VLP-based TNT electrochemical sensor utilizes unique diffusion modulation method enabled by biological binding between target TNT and receptor VLP. The method avoids the influence from any interfering species and environmental background signals, making it extremely suitable for directly quantifying the TNT level in a sample. It is also a rapid method that does not need any sensor surface functionalization process. For antibody sensing, the VLPs carrying both antibody binding peptides and cysteine residues are assembled onto the gold electrodes of an impedance microsensor. With two-phase immunoassays, the VLP-based impedance sensor is able to quantify antibody concentrations down to 9.1 ng/mL. A capillary microfluidics and impedance sensor integrated microsystem is developed to further accelerate the process of VLP assembly on sensors and improve the sensitivity. Open channel capillary micropumps and stop-valves facilitate localized and evaporation-assisted VLP assembly on sensor electrodes within 6 minutes. The VLP-functionalized impedance sensor is capable of label-free sensing of antibodies with the detection limit of 8.8 ng/mL within 5 minutes after sensor functionalization, demonstrating great potential of VLP-based sensors for rapid and on-demand chemical and biological sensing.

Analyse du compartiment mésozooplanctonique et écologie alimentaire printanière de la sardine, Sardina pilchardus (Walbaum, 1782), et de l’anchois, Engraulis encrasicolus (Linné, 1758) adultes dans le Golfe de Gascogne

Dietary studies of marine species constitute an important key to improve the understanding of its biology and of its role in the ecosystem. Thus, prey-predator relationships structure and determine population dynamics and the trophic network at the ecosystem scale. Among the major study sites, the marine ecosystem is submitted to natural and anthropogenic constraints. In the North-Eastern part of the Atlantic Ocean, the Bay of Biscay is a large open area surrounded South by Spain and East by France. This bay is an historic place of intense fishery activities for which the main small pelagic species targeted are the pilchard, Sardina pilchardus and the anchovy, Engraulis encrasicolus. The aim of this work is to analyze the trophic ecology of these two small pelagic fish in spring in the Bay of Biscay. To do this, a first section is devoted to their prey composed by the mesozooplanktonic compartment, through a two-fold approach: the characterization of their spatio-temporal dynamics during the decade 2003-2013 and the measurement of their energetic content in spring. For this season, it appears that all prey types are not worth energetically and that the Bay of Biscay represents a mosaic of dietary habitat. Moreover, the spring mesozooplankton community presents a strong spatial structuration, a temporal evolution marked by a major change in abundance and a control by the microphytoplankton biomass. The second section of this work is relative to a methodological approach of the trophic ecology of S. pilchardus and E. encrasicolus. Three different trophic tracers have been used: isotopic ratios of carbon and nitrogen, parasitological fauna and mercury contamination levels. To improve the use of the first of these trophic tracers, an experimental approach has been conducted with S. pilchardus to determine a trophic discrimination factor. Finally, it appears that the use of these three trophic tracers has always been permitted to highlight a temporal variability of the relative trophic ecology of these fish. However, no spatial dynamics could be identified through these three trophic tracers.

Caracterização agronômica e fisíco-química de progênies de maracujazeiro azedo (Passiflora edulis Sims) no Distrito Federal

Dissertação (mestrado)—Universidade de Brasília, Faculdade de Agronomia e Medicina Veterinária, Programa de Pós-Graduação em Agronomia, 2016.

Migration and diversity policies. Moroccans in Spain

curso 'Mediterranean migration mosaic'. Dickinson College, Pennsylvania, EE.UU. Málaga, 14 de marzo, 2013.

Criar e participar : uma análise ao envolvimento em projetos artístico-culturais no Instituto Federal de Brasília - Campus Planaltina

Dissertação apresentada para obtenção do grau de mestre em Educação Social e Intervenção Comunitária

Criar e participar : uma análise ao envolvimento em projetos artístico-culturais no Instituto Federal de Brasília - Campus Planaltina

Dissertação apresentada para obtenção do grau de mestre em Educação Social e Intervenção Comunitária

Patterns in the space use of the Bearded Reedling, Panurus biarmicus, on the Tay Reedbeds, Scotland

This thesis presents research into the space use of a specialist reedbed Passerine, the Bearded Reedling, or Bearded Tit, Panurus biarmicus, with a view to inform the conservation of this species and reedbeds as a whole. How a species uses space, and how space use changes between individuals or over time, can influence: the ability to forage and hunt effectively, breeding success, susceptibility to predation, genetic health, disease spread, robustness against environmental change and ultimately, colonisation or extinction. Thus, understanding the space use of animals can provide critical insight into ecological systems. Birds offer interesting models when studying animal space use, as, by being intrinsically mobile, many bird species can occupy multiple spatial scales. As a consequence of being completely dependent on patchy and ephemeral reedbed habitats, the Bearded Reedling, has a clustered, inhomogeneous distribution throughout its range. This drives the existence of distinct spatial scales upon which space use studies should be characterised. Distribution and movement within a single reedbed can be considered local-scale, while spatial processes between reedbeds can be considered wide-scale. Temporal processes may act upon both of these scales. For example, changing interactions with predators may influence nest positioning at a local-scale, while seasonal changes in resource requirements might drive processes such as migration at a wide-scale. The Bearded Reedling has a wide temperate breeding range, extending over much of Eurasia. On the IUCN’s red list, it is listed as ‘of least concern’, with an estimated European population between 240,000-480,000 breeding pairs. Despite its relatively favourable conservation status, its dependence on reedbed habitats drives a fragmented distribution, with populations being concentrated in small, isolated, stands. Over the last century reedbed wetlands have suffered rapid declines caused by drainage schemes undertaken to improve land for development or agriculture. Additionally, many remaining reed stands are subject to extensive commercial management to produce thatch or biofuel. Conversely, in other areas, management is driven by conservation motives which recognise the present threats to reedbeds, and aim to encourage the diversity of species associated with these habitats. As the Bearded Reedling is fundamentally linked to the quality and structure of a reed stand, understanding the space use of this species will offer information for the direct conservation of this specialist species, and for the effects of reedbed management as a whole. This thesis first presents studies of space use at a local-scale. All local-scale research is conducted at the Tay Reedbeds in eastern Scotland. Mist netting and bird ringing data are used within capture recapture models, which include an explicit spatial component, to gain insight into the abundance of the Bearded Reedling on the Tay. This abundance estimation approach suggests the Tay reedbeds are a stronghold for this species on the British Isles, and that, as a high latitude site, the Tay may have importance for range expansion. A combination of transect surveys and radio-tracking data are then used to establish the local-scale space use of this species during the breeding and autumnal seasons. These data are related to changes in the structure of reed caused by local management in the form of mosaic winter reed cutting. Results suggest that birds exploit young and cut patches of reed as foraging resources when they are available, and that old, unmanaged reed is critical for nesting and winter foraging. Further local-scale studies concern the spatial patterns in the nesting habits of this species. Mosaic reed cutting creates clear edges in a reedbed. Artificial nests placed in the Tay Reedbeds demonstrate increased nest predation rates closer to the edges of cut patches. Additionally, high predation rates become reduced as the cut reed re-grows, suggesting that reed cutting may increase accessibility of the stand to predators. As Bearded Reedling nests are uncommon and difficult to locate, the timing, site selection and structure of a sample of real nests from the Tay is then detailed. These demonstrate an early, and relatively rigid breeding onset in this species, the importance of dense, compacted reeds as nesting sites and a degree of flexibility in nest structure. Conservation efforts will also benefit from studies into wide-scale spatial processes. These may be important when establishing how colonisation events occur and when predicting the effects of climatic change. The Bearded Reedling has been traditionally considered a resident species which only occasionally undertakes wide-scale, between-reedbed, movements. Indeed, the ecology of this species suggests strict year round local residency to reedbeds, with distinct seasonal changes in diet allowing occupation of these habitats year round. The European ringing recoveries of this species, since the 1970s are investigated to better characterise the wider movements of specialist resident. These suggest residency in southern populations, but higher instances of movement than expected in more northerly regions. In these regions wide-scale movement patterns resemble those of partial regular migratory species. An understanding of local and wide-scale spatial processes can offer a strong foundation on which to build conservation strategies. This thesis aims to use studies of space use to provide this foundation for the Bearded Reedling and offer further insight into the ecology of reedbed habitats as a whole. The thesis concludes by proposing an effective strategy for the conservation management of reedbeds that will especially benefit the Bearded Reedling.

Factores asociados a la mortalidad en el síndrome de Sjögren

Antecedentes: El síndrome de Sjögren (SS) es una patología crónica, autoinmune, de características multifactoriales en su etiología. También es conocida como una epitelitis autoinmune, caracterizada por síntomas secos como xeroftalmia y xerostomía, pero que también puede tener compromiso sistémico, dado por manifestaciones extra-glandulares. En la actualidad es poco reconocida como tal, y por lo tanto, la tasa de sobrevida en estos pacientes se encuentra disminuida pero poco tenida en cuenta a la hora de la valoración de ellos. Este trabajo describe la evidencia encontrada acerca de las causas de mortalidad y sus factores asociados luego de realizar una revisión sistemática de la literatura. Objetivos: El objetivo de este estudio fue reunir de forma exhaustiva y sistemática toda la evidencia empírica, publicada o no, que cumpla los criterios de búsqueda y elegibilidad sobre factores asociados al incremento de la mortalidad o disminución en la sobrevida de los pacientes con diagnóstico de SS. Métodos: Se realizó una revisión sistemática de la literatura mediante una búsqueda exhaustiva de todos los estudios publicados en las bases de datos electrónicas preestablecidas, hasta abril de 2015, con el fin de determinar las causas más frecuentes de mortalidad en pacientes con SS y los factores asociados a ella. Resultados: Se encontraron 4,654 resultados que coincidían con los criterios de búsqueda establecidos; de estos, 33 cumplieron con los criterios de inclusión y se distribuyeron de la siguiente forma: el 66.6% (22/33) correspondieron a estudios de corte cohorte, 30.3% (10/33) a estudios de corte transversal y el 3.03% (1/33) a estudios casos y controles. Se obtuvieron resultados en cuanto a frecuencias de mortalidad, razón estandarizada de mortalidad, tasas de supervivencia, causas más frecuentes de mortalidad y sus factores asociados. Conclusiones: La mortalidad reportada en los diferentes estudios fue entre el 1.2% hasta el 30%. Aquellos estudios que reportaron una tasa de mortalidad inferior al 5%, tuvieron un tiempo de seguimiento menor 8 años [1,7,33,60,64,86]. La mayoría de los casos sigue un curso relativamente estable, pero hay un porcentaje importante que presenta otras manifestaciones sistémicas con mayor frecuencia de complicaciones durante la evolución del SS. Por tanto, son los que requieren un seguimiento más estrecho, debido a una mayor necesidad de tratamiento sistémico y al mayor riesgo de ingreso hospitalario y de mortalidad, especialmente por el desarrollo de procesos linfoproliferativos B. La presencia de factores pronósticos en el paciente con SS obligará a realizar un seguimiento clínico e inmunológico mucho más estrecho, lo cual permitirá identificar lo antes posible las complicaciones que puedan aparecer e instaurar las correspondientes medidas terapéuticas, para aumentar las tasas de supervivencia.

Generalities of vertebrate responses to landscape composition and configuration gradients in a highly heterogeneous Mediterranean region

Aim To examine the distributional patterns of vertebrates (including birds, bats, carnivores and lagomorphs) along landscape composition and configuration gradients to better understand the effects of landscape modification on occurrence patterns at both species and community level. Location The region of Alentejo, a forest-dominated area of southern Portugal. Methods The study area was framed using 1647 hexagonal plots, each of 259 ha in size. Composition and configuration gradients were obtained for each plot by integrating the proportions of the main land cover types and their configuration patterns using multivariate analyses. Species-specific vertebrate responses were investigated using data from 75 plots in which carnivores, bats and lagomorphs were sampled, and from 135 plots in the case of birds. Community- level responses were investigated through changes in species richness and beta-diversity in 57 plots where all vertebrate groups were simultaneously sampled. At the species-level, an information-theoretic approach was used to determine the effects of landscape gradients on species’ responses. At the community level, Mantel tests were used to determine between-plot differences in species composition using the Sørensen dissimilarity index. Results We found that the occurrence patterns of most vertebrate species were best predicted by composition-related gradients, although configuration gradients were also frequently included in species-specific occurrence models. We also found a weak correlation between species richness and most landscape gradients suggesting a turnover in the identity of species, something that was corroborated by the stronger correlation between environmental gradients and beta-diversity measures. The amount of forest cover and landscape complexity (estimated as the heterogeneity in the size and number of land cover types) were the main composition and configuration gradients determining vertebrate responses at both species and community level. Main conclusions Our work contributes to a more refined understanding of the mechanisms underlying species distributional patterns in real-world human-modified landscapes. By uncovering generalities of species with multiple ecological requirements and by describing the entire landscape mosaic through landscape gradients, we also suggest that our work greatly helps to fill the gap between existing conceptual landscape models aimed to understand species distributional patterns in human-modified landscapes.

CORREDORES ECOLÓGICOS DA MATA ATLÂNTICA: VISÃO INTEGRADORA DO PLANEJAMENTO TERRITORIAL NO CONTÍNUO DE PARANAPIACABA -ESTADO DE SÃO PAULO - BRASIL

La visión bioregional de la conservación es reciente en Brasil. El planeamiento de mosaicos de las áreas protegidas con las intervenciones previstas en la zona tapón es un alternativa para corregir los dibujos actuales de áreas de protección. Lo Continuum Ecológico de Paranapicaba en el estado de Sâo Paulo (Brasil) se puede considerar uno de los corredores restantes más importantes de Mata Atlântica, reducidos hoy solamente a 7.3% de su extensión original. El Continuum Ecológico de Paranapiacaba tiene un alto nivel de biodiversidad. Se caracteriza por la vegetación que presenta gran diversidad estructural, y por lo tanto, así como  la presencia de  las  especie-llaves  endémicas, que  requieren  los  esfuerzos  efcientes para su conservación. Las estrategias que vienen siendo adoptados por  los parceiros de  la conservación buscan demostrar que es posible construir las ofertas adecuadas del uso y de la exploración sostenible de los recursos naturales. El empalme de algunas iniciativas socioambientales con el mosaico de las unidades de conservación, busca una “buena vecindad” a las unidades de la conservación que se hallan en el área-núcleo del Continuum. Palabras clave: Mata Atlântica, bosque lluvioso, buffer zone, conservación, áreas protegidas Abstract The bioregional vision of the conservation is recent in Brazil. The planning of mosaics of areas protected with interventions planned in the buffer zone is an alternative to correct the current drawings of Protecting Areas. The ecological Continuum of Paranapicaba in  the State of São Paulo  (Brazil) can be considered one of  the most  important  remaining corridors of Atlantic Rainforest, today reduced only 7.3% of its original extension. High level of biodiversity  is characterized by forest vegetation  that presents great structural diversity, and consequently, as well as presence of endemic species-keys, that require effcient efforts for its conservation. The strategies that come being adopted for partners of the conservation search to demonstrate that it is possible to construct to adequate proposals of use and sustainable exploration of the natural resources. The joint of the some social-environmental initiatives with the mosaic of Units of Conservation, searchs to construct a “good neighborhood” to the Units of Conservation that if fnd in the area-nucleus of Continuum.Key words: Mata Atlântica, rainforest, buffer zone, conservation, áreas protegidas

Molecular characterization of Grapevine enamolike virus, a novel putative member of the genus Enamovirus.

2016

A INFLUÊNCIA DO ESTOQUE DE MATÉRIA ORGÂNICA DO SOLO EM FRAGMENTOS FLORESTAIS DE MATA ATLÂNTICA

In the Atlantic forest biome, very fragmented and with high diversity of ecosystems, of species, and high endemism degree, the maintenance of the status of the biological diversity presupposes the recovery and conservation of the mosaic of existent fragments. In that context, the use of global functional indicators for the evaluation of the state of conservation of fragments, for the character of systemic synthesis that they act becomes interesting. In tropical forests ecosystems, the surface organic matter stock of the soil is one functional indicator of the decomposition subsystem and they are responsible in big measured by the maintenance and survival of the communities of those ecosystems group. The human action when fragmenting the forest ecosystems, as it substitutes the native forest for different forms of use of the soil, it creates different head offices that they exercise pressures differentiated on the fragment and, consequently, on the operation of the fundamental processes of the ecosystem that represents it. Thus, in the sense of understanding the state of functional conservation of fragments forest remainders of the Atlantic forest, in the extent of the Environmental Protection Area of Petrópolis - Rio de Janeiro, which interferes in the Mosaic of Units of Conservation of the Fluminense Central Atlantic forest and, in a larger scale still, in the Ecological Corridor of the Serra do Mar, in the present study the stock of organic matter of surface of four forest fragments in summer of 2008 and summer of 2009 are analyzed comparatively.

Clonagem de construto de RNA interferente para produção de Maruba-Kaido resistente a vírus de macieira.

2012

Potyvirus causando mosaico em plantas daninhas nas culturas do milho e do sorgo.

2016