Atmospheric nutrient input to coastal areas: reducing the uncertainties

A significant fraction of the total nitrogen entering coastal and estuarine ecosystems along the eastern U.S. coast arises from atmospheric deposition; however, the exact role of atmospherically derived nitrogen in the decline of the health of coastal, estuarine, and inland waters is still uncertain. From the perspective of coastal ecosystem eutrophication, nitrogen compounds from the air, along with nitrogen from sewage, industrial effluent, and fertilizers, become a source of nutrients to the receiving ecosystem. Eutrophication, however, is only one of the detrimental impacts of the emission of nitrogen containing compounds to the atmosphere. Other adverse effects include the production of tropospheric ozone, acid deposition, and decreased visibility (photochemical smog). Assessments of the coastal eutrophication problem indicate that the atmospheric deposition loading is most important in the region extending from Albemarle/Parnlico Sounds to the Gulf of Maine; however, these assessments are based on model outputs supported by a meager amount of actual data. The data shortage is severe. The National Research Council specifically mentions the atmospheric role in its recent publication for the Committee on Environmental and Natural Resources, Priorities for Coastal Ecosystem Science (1994). It states that, "Problems associated with changes in the quantity and quality of inputs to coastal environments from runoff and atmospheric deposition are particularly important [to coastal ecosystem integrity]. These include nutrient loading from agriculture and fossil fuel combustion, habitat losses from eutrophication, widespread contamination by toxic materials, changes in riverborne sediment, and alteration of coastal hydrodynamics. "

Chemical contaminants in the coral Porites astreoides from southwest Puerto Rico

This report presents an initial characterization of chemical contamination in coral tissues (Porites astreoides) from southwest Puerto Rico. It is the second technical report from a project to characterize chemical contaminants and assess linkages between contamination and coral condition. The first report quantified chemical contaminants in sediments from southwest Puerto Rico. This document summarizes the analysis of nearly 150 chemical contaminants in coral tissues. Although only eight coral samples were collected, some observations can be made on the correlations between observed tissue and sediment contaminant concentrations. The concentrations of polycyclic aromatic hydrocarbons (PAHs), typically associated with petroleum spills and the combustion of fossil fuels, and polychlorinated biphenyls (PCBs) in the coral tissues were comparable to concentrations found in adjacent sediments. However, the concentration of a chemical contaminant (e.g., PAHs) in the coral tissues at a particular site was not a good predictor of what was in the adjacent sediments. In addition, the types of PAHs found in the coral tissues were somewhat different (higher ratios of alkylated PAHs) than in sediments. The levels of PCBs and DDT in coral tissues appeared higher just outside of Guanica Bay, and there was evidence of a downstream concentration gradient for these two contaminant classes. The trace elements copper, zinc and nickel were frequently detected in coral tissues, and the concentration in the corals was usually comparable to that found in adjacent sediments. Chromium was an exception in that it was not detected in any of the coral tissues analyzed. Additional work is needed to assess how spatial patterns in chemical contamination affect coral condition, abundance and distribution.

In utero domoic acid toxicity: a fetal basis to adult disease in the California sea lion (Zalophus californianus)

California sea lions have been a repeated subject of investigation for early life toxicity, which has been documented to occur with increasing frequency from late February through mid-May in association with organochlorine (PCB and DDT) poisoning and infectious disease in the 1970's and domoic acid poisoning in the last decade. The mass early life mortality events result from the concentrated breeding grounds and synchronization of reproduction over a 28 day post partum estrus cycle and 11 month in utero phase. This physiological synchronization is triggered by a decreasing photoperiod of 11.48 h/day that occurs approximately 90 days after conception at the major California breeding grounds. The photoperiod trigger activates implantation of embryos to proceed with development for the next 242 days until birth. Embryonic diapause is a selectable trait thought to optimize timing for food utilization and male migratory patterns; yet from the toxicological perspective presented here also serves to synchronize developmental toxicity of pulsed environmental events such as domoic acid poisoning. Research studies in laboratory animals have defined age-dependent neurotoxic effects during development and windows of susceptibility to domoic acid exposure. This review will evaluate experimental domoic acid neurotoxicity in developing rodents and, aided by comparative allometric projections, will analyze potential prenatal toxicity and exposure susceptibility in the California sea lion. This analysis should provide a useful tool to forecast fetal toxicity and understand the impact of fetal toxicity on adult disease of the California sea lion.

El Niño reconstructions and confirmation of a pan-Californian model via Radiolarian evidence

Radiolarian number and/or flux rates extracted from Holocene and fossil sediments are used to help detect the presence of, type of (weak or strong), and exact location of the depocenter under an El Niño. These data, along with known provenances of certain radiolarians, support an earlier model that suggests a weak El Niño is a northern and coupled expression of a more southerly strong component dominated by eastern tropical Pacific water underlain by California current and gyre water.

Neogene through Pleistocene paleoclimate of the Great Salt Lake region, northeastern Great Basin, USA

In a cooperative agreement between Amoco Production Company and the University of Arizona Geosciences Department, extensive data and resources associated with 15 deep wells drilled in the Great Salt Lake are currently on loan at the University of Arizona. Seismic data, electric and lithologic logs, cuttings and previously-prepared pollen slides will eventually permit a thorough study of both the tectonic and climatic history of the Great Salt Lake region. The preliminary study presented here concentrates on the Late Tertiary and Pleistocene climatic reconstruction of the eastern Great Basin through examination of fossil pollen.

岷江中上游植被生态恢复过程中若干问题的探讨

　1．对四川省岷江上游地区（茂县）的锐齿槲栎（Quercus aliena var. acuteserrata）天然次生林进行研究，发现：(1) 坚果完好比例约在14% ~26%之间，完好坚果的发芽率和发芽势都比较高，但在天然状况下能够留存到翌年5月的坚果几乎没有。因此，实生幼苗的天然补充就受到了严重的限制。(2) 林缘的幼苗密度低于所有其它生境的 (P<0.05)，林中的幼苗密度最高，和林窗的比较有显著差异(P<0.05), 而和灌丛的比较则差异不显著（P>0.05）。在灌丛幼苗密度和林中以及林窗的比较都没有差异。动物对坚果的取食速度则是林中的最慢 (10.0%)，林窗和林缘的基本相同(分别为61.1%和66.5%)，取食速度都明显快于林中(P<0.01)。(3) 林中的幼苗在小于100 cm的各高度内都有大量分布，说明在林中树冠下幼苗是可以长期存在的，暗示在幼苗阶段的锐齿槲栎可能是耐荫的。(4) 在林中缺失幼树，在林缘则有包括幼树在内的完整的更新大小系列，表明林缘是更新的关键地点。(5) 在栎林的每一个大小级别上，萌生个体和实生个体都按各种比例伴生，说明导致萌生的干扰一直在发生，并可能在森林的更新中扮演重要角色;也说明该地区的锐齿槲栎林由萌生和实生起源的个体混合组成。 2．栎林是北半球温带森林的重要组成部分，因此栎林更新是全球森林更新研究的热点之一，而啮齿动物对栎林更新的影响则是关注的焦点。在2002~2003年，通过坚果标记研究了未被取食和遗弃坚果（即咬开后只有少部分被捕食后丢弃在林中的坚果）的健康比例，并定量测定了坚果的捕食、搬运、遗弃、丢弃、贮藏和留存等各种命运的比例和特点;对坚果也进行了各种人为的处理，以观测其命运和动物取食速度，发现：(1) 遗弃坚果中不健康坚果的比例比动物未取食的天然坚果中的比例有极显著的增加 (P>0.05)，暗示啮齿动物一般是通过咬开坚果来识别坚果健康与否并决定是否捕食。(2) 根据坚果命运和对照相比改变与否以及如何改变，各种人工处理坚果的命运可以分为 4 类：① 坚果命运没有任何显著改变;② 坚果被就地捕食的速度降低，搬运的速度不变，最终搬运坚果的比例增加而就地捕食坚果的比例降低，留存坚果的比例偶尔能增加至0.2%;③ 坚果就地捕食的速度几乎降至0，搬运的速度则在下降一段时间后又上升，并且搬运作用持续了相对长的时间，最终搬运坚果的比例大大增加，就地捕食坚果的比例很低，留存率为0;④ 坚果被搬运和就地捕食的速度和比例都降低，留存坚果的比例相应的大大增加，甚至可以达到50%。(3) 命运得到显著改变的②、③、④类坚果所承受的人工处理按照作用方式又可以分为主要作用于坚果化学状态（即气味浓度）的处理、主要作用于坚果物理状态（颜色、形态、有无附属物等）的处理以及使坚果处于不同颜色背景的处理;其中主要作用于坚果化学状态的处理对坚果命运具有最重大的改变，如胶带包裹处理和烧焦处理;其它各种主要作用于坚果的物理状态和所处背景的处理对其命运则也具有相对轻微的改变。这一试验结果可能证明：啮齿动物在对坚果进行识别和取食选择等活动时主要依赖于嗅觉来感知坚果的可食性，但是能感觉物理状态和所处背景的视觉也起一定程度的作用。(4) 啮齿动物对栎树坚果进行就地捕食、遗弃、搬运、异地捕食、丢弃、贮藏等作用，使各种命运的坚果都具有一定的数量比例和特点，也提供了动物影响栎林更新的多种可能途径。 3．人工干扰是任何退化生态系统中都始终存在的重大问题。除了明显的砍伐或者采摘外，人工践踏也是一种重要的干扰，特别是在茂县的山林普遍被牛马不断的放牧的情况下，这个干扰的后果就更加显著。为此研究了人脚踩踏的路上的白车轴草和未踩踏草坪上白车轴草在最大叶长、株高、芽高、构件数量、构件平均鲜重、死叶数量、根长等构型指标，根、茎、叶三者的生物量（干重）及比例等生物量指标，平均花序数量、花平均数量等繁殖指标方面的不同，发现踩踏使白车轴草植株：(1) 株高降低，芽高降低，最大叶长变小，平均每厘米的构件数量增加，构件平均鲜重降低，根长度减小，死叶数量增加。(2) 平均花序数量下降，每花序的花平均数量下降。(3) 但是在生物量的分配上，根和茎的生物量没有显著的下降，但是叶的生物量显著减低。因为白车轴草的茎可以不断克隆繁殖，所以踩踏对其存活可能没有太大的影响，只是造成了植株的矮化和密集化，根也变短;但是对种子繁殖有重大影响，反映在平均花序数量和每花序平均花数的显著下降上。在生物量的分配中，作为主要的同化器官，叶的生物量显著下降，而根茎比没有变化。这可能说明这样的克隆植物其物质流动是呈现网络化的特征，具有比较强的抗干扰能力。 4．连香树、油松、日本落叶松、华山松油松混合林是茂县地区的几种主要的已经营造的林型或者树种。为了了解其20年来的营林效果，运用样方调查的方法测量了这几种树种或者林型的胸径、持水量、凋落物现存量、密度等，评价了它们在生长、营业循环和水土保持等方面的差异。结果表明：日本落叶松具有生长缓慢，凋落物现存量大，涵养水分能力良好的树种，值得推广;油松生长迅速，凋落物现存量巨大，涵养水分能力一般的树种，也可以大力栽植;油松和华山松的混交林具有比较大的蓄积量和较好的涵养水分的能力，可以推广;而连香树则做为生长速度中等，成材率低，凋落物现存量小，涵养水分能力差的树种，不应该进一步推广。

Chronological records of climate-related events and societal consequences [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): A chronology of documented regional and global warm and cold event records is collated along with documented ecosystem response records and health threat/sequellae records for the historical period. Patterns of societal response to cold periods punctuated by warm periods have been associated with considerable human health impacts, stimulated by blooms in disease vectors such as rodents and insects.

Chromosome painting in the long-tailed field mouse provides insights into the ancestral murid karyotype

We report on the hybridization of mouse chromosomal paints to Apodemus sylvaticus, the long-tailed field mouse. The mouse paints detected 38 conserved segments in the Apodemus karyotype. Together with the species reported here there are now six species of rodents mapped with Mus musculus painting probes. A parsimony analysis indicated that the syntenies of nine M. musculus chromosomes were most likely already formed in the muroid ancestor: 3, 4, 7, 9, 14, 18, 19, X and Y. The widespread occurrence of syntenic segment associations of mouse chromosomes 1/17, 2/13, 7/19, 10/17, 11/16, 12/17 and 13/15 suggests that these associations were ancestral syntenies for muroid rodents. The muroid ancestral karyotype probably had a diploid number of about 2n = 54. It would be desirable to have a richer phylogenetic array of species before any final conclusions are drawn about the Muridae ancestral karyotype. The ancestral karyotype presented here should be considered as a working hypothesis. Copyright (C) 2004 S. Karger AG, Basel.

MULTIPLE GENOTYPES OF MITOCHONDRIAL-DNA WITHIN A HORSE POPULATION FROM A SMALL REGION IN YUNNAN PROVINCE OF CHINA

mtDNA genotypes of six domestic horses (three adult short horses whose heights are under 1 m and three common domestic horses) from a small region of 15 km(2) in Malipo county of Yunnan province of China were investigated by the technique of restriction fragment length polymorphism (RFLP) with restriction endonucleases which recognize 6-bp sequences. An average of fragments for an individual was obtained. Unlike other domestic animals, this population of horses exhibits high mtDNA genetic diversity. Each of the six horses has a specific mtDNA genotype showing a pattern of multiple maternal origins, as suggested by fossil and literature records. We think the population of horses is an amazing seed-resource pool of horses and hence deserves to be paid more attention from the view of conservation genetics. However it is also remarkable that we did not find any typical mtDNA genetic markers which would discriminate between short horses and common domestic horses.

Y-chromosome evidence of southern origin of the East Asian - Specific haplogroup O3-M122

The prehistoric peopling of East Asia by modern humans remains controversial with respect to early population migrations. Here, we present a systematic sampling and genetic screening of an East Asian-specific Y-chromosome haplogroup (O3-M122) in 2,332 individuals from diverse East Asian populations. Our results indicate that the O3-M122 lineage is dominant in East Asian populations, with an average frequency of 44.3%. The microsatellite data show that the O3-M122 haplotypes in southern East Asia are more diverse than those in northern East Asia, suggesting a southern origin of the O3-M122 mutation. It was estimated that the early northward migration of the O3-M122 lineages in East Asia occurred similar to 25,000-30,000 years ago, consistent with the fossil records of modern humans in East Asia.

Phylogenetic study of complete cytochrome b genes in musk deer (genus Moschus) using museum samples

As an endangered animal group, musk deer (genus Moschus) are not only a great concern of wildlife conservation, but also of special interest to evolutionary studies due to long-standing arguments on the taxonomic and phylogenetic associations in this group. Using museum samples, we sequenced complete mitochondrial cytochrome b genes (1140 bp) of all suggested species of musk deer in order to reconstruct their phylogenetic history through molecular information. Our results showed that the cytochrome b gene tree is rather robust and concurred for all the algorithms employed (parsimony, maximum likelihood, and distance methods). Further, the relative rate test indicated a constant sequence substitution rate among all the species, permitting the dating of divergence events by molecular clock. According to the molecular topology, M. moschiferus branched off the earliest from a common ancestor of musk deer (about 700,000 years ago); then followed the bifurcation forming the M. berezouskii lineage and the lineage clustering M. fuscus, M. chrysogaster, and M. leucogaster (around 370,000 years before present), interestingly the most recent speciation event in musk deer happened rather recently (140,000 years ago), which might have resulted from the diversified habitats and geographic barriers in southwest China caused by gigantic movements of the Qinghai-Tibetan Plateau in history. Combining the data of current distributions, fossil records, and molecular data of this study, we suggest that the historical dispersion of musk deer might be from north to south in China. Additionally, in our further analyses involving other pecora species, musk deer was strongly supported as a monophyletic group and a valid family in Artiodactyla, closely related to Cervidae. (C) 1999 Academic Press.

啮齿目泌乳刺激素基因家族的分子进化研究

在大鼠基因组数据库中搜索得到两个泌乳刺激素基因家族的新成员.进一步分析显示该基因家族起源于啮齿目和其他哺乳动物分歧之后,而且大部分基因座位的重排在大、小鼠分歧之前已经完成.但PL-Ⅰ和PL-Ⅱ基因簇却是例外,它们在基因树上以物种特异的方式聚类.结合基因转换的检验、染色体上相对位置比较和基因重复时间估计的结果,认为啮齿目PL-Ⅰ和PL-Ⅱ基因是物种特异的,它们由一系列在大、小鼠分歧之后发生的基因重复事件形成.结果还揭示了在啮齿目泌乳刺激素基因家族进化过程中持续不断的发生了基因重复和基因分化事件.

Phylogenetic relationships of five pika species (genus Ochotona) based on mitochondrial DNA restriction maps

Restriction site mapping of mitochondrial DNA (mtDNA) with 16 restriction endonucleases was used to examine the phylogenetic relationships of Ochotona cansus, O. huangensis, O. thibetana, O. curzoniae and O. erythrotis. A 1-kb length variation between O. erythrotis of subgenus Pika and other four species of subgenus Ochotona was observed, which may be a useful genetic marker for identifying the two subgenera. The phylogenetic tree constructed using PAUP based on 61 phylogenetically informative sites suggests that O. erythrotis diverged first, followed by O. cansus, while O. curzoniae and O. huangensis are sister taxa related to O. thibetana, The results indicate that both O. cansus and O. huangensis should be treated as independent species. If the base substitution rate of pikas mtDNA was 2% per million years, then the divergence time of the two subgenera, Pika and Ochotana, is about 8.8 Ma ago of late Miocence, middle Bao-dian of Chinese mammalian age, and the divergence of the four species in subgenus Ochotona would have occurred about 2.5 - 4.2 Ma ago, Yushean of Chinese mammalian age. This calculation appears to be substantiated by the fossil record.

Sequence evolution of the CCR5 chemokine receptor gene in primates

The chemokine receptor CCR5 can serve as a coreceptor for M-tropic HIV-1 infection and both M-tropic and T-tropic SIV infection. We sequenced the entire CCR5 gene from 10 nonhuman primates: Pongo pygmaeus, Hylobates leucogenys, Trachypithecus francoisi, Trachypithecus phayrei, Pygathrix nemaeus, Rhinopithecus roxellanae, Rhinopithecus bieti, Rhinopithecus avunculus, Macaca assamensis, and Macaca arctoides. When compared with CCR5 sequences from humans and other primates, our results demonstrate that:(1) nucleotide and amino acid sequences of CCR5 among primates are highly homologous, with variations slightly concentrated on the amino and carboxyl termini; and (2) site Asp13, which is critical for CD4-independent binding of SIV gp120 to Macaca mulatta CCR5, was also present in all other nonhuman primates tested here, suggesting that those nonhuman primate CCR5s might also bind SIV gp120 without the presence of CD4. The topologies of CCR5 gene trees constructed here conflict with the putative opinion that the snub-nosed langurs compose a monophyletic group, suggesting that the CCR5 gene may not be a good genetic marker for low-level phylogenetic analysis. The evolutionary rate of CCR5 was calculated, and our results suggest a slowdown in primates after they diverged from rodents. The synonymous mutation rate of CCR5 in primates is constant, about 1.1 x 10(-9) synonymous mutations per site per year. Comparisons of K-a and K-s suggest that the CCR5 genes have undergone negative or purifying selection. K-a/K-s ratios from cercopithecines and colobines are significantly different, implying that selective pressures have played different roles in the two lineages.

Evolutionary trends of the mitochondrial lineage differentiation in species of genera Martes and Mustela

We compared partial sequences (402 bp) of the mitochondrial cytochrome b gene in 68 individuals of martens (Martes), weasels (Mustela) and their relatives from the Northern Hemisphere to identify the modes of geographic differentiation in each species. We then compared complete sequences (1140 bp) of the gene in 17 species of the family Mustelidae to know the spatial and temporal modes of speciation, constructing linearized trees with transversional substitutions for deeper lineage divergences and with transversions and transitions for younger lineages. Our data suggested that these lineages of Martes and Mustela differentiated in a stepwise fashion with five radiation stages from the generic divergences (stage I) to the intraspecific divergences (stage V), during the last 10 or 20 million years as the fossil evidence suggests. In the lineage of Martes, the first offshoots are of Martes flavigula, M. pennanti, and Gulo gulo (stage II), the second is M. foina (stage III), and the third are M. americana, M. martes, M. melampus, and M. zibellina (stage IV). The divergence of the lineages of Mustela is likely to have taken place concurrently with the radiations of the Martes. These divergence processes are attributable in part to the geographic allocation along the two continents, North America and Eurasia, as well as among peripheral insular domains, such as Taiwan and the Japanese Islands. In addition, the Eurasian continent itself was shown to have been involved in the species diversification in the martens and weasels.