Using digital RNA counting and flow cytometry to compare mRNA with protein expression in acute leukemias.

BACKGROUND: The diagnosis of malignant hematologic diseases has become increasingly complex during the last decade. It is based on the interpretation of results from different laboratory analyses, which range from microscopy to gene expression profiling. Recently, a method for the analysis of RNA phenotypes has been developed, the nCounter technology (Nanostring® Technologies), which allows for simultaneous quantification of hundreds of RNA molecules in biological samples. We evaluated this technique in a Swiss multi-center study on eighty-six samples from acute leukemia patients. METHODS: mRNA and protein profiles were established for normal peripheral blood and bone marrow samples. Signal intensities of the various tested antigens with surface expression were similar to those found in previously performed Affymetrix microarray analyses. Acute leukemia samples were analyzed for a set of twenty-two validated antigens and the Pearson Correlation Coefficient for nCounter and flow cytometry results was calculated. RESULTS: Highly significant values between 0.40 and 0.97 were found for the twenty-two antigens tested. A second correlation analysis performed on a per sample basis resulted in concordant results between flow cytometry and nCounter in 44-100% of the antigens tested (mean = 76%), depending on the number of blasts present in a sample, the homogeneity of the blast population, and the type of leukemia (AML or ALL). CONCLUSIONS: The nCounter technology allows for fast and easy depiction of a mRNA profile from hematologic samples. This technology has the potential to become a valuable tool for the diagnosis of acute leukemias, in addition to multi-color flow cytometry.

Modelado, simulación y control digital de autogiros

Este proyecto consiste en diseñar el algoritmo de control de un autogiro no tripulado. Su aplicación principal es llevar a cabo tareas rutinarias o peligrosas para el piloto como, por ejemplo, extinción de incendios, evaluación de riesgo químico o vigilancia de lugares de acceso restringido. Se realiza un estudio del movimiento del vehículo para obtener su modelo dinámico. A partir de las ecuaciones que describen su movimiento, se realiza una simulación numérica del vehículo. Se incorpora el controlador diseñado y se evalúa su funcionamiento. Finalmente, se implementa el sistema en un microcontrolador.

Project for Active and Robot Vision Course

Tässä työssä raportoidaan harjoitustyön kehittäminen ja toteuttaminen Aktiivisen- ja robottinäön kurssille. Harjoitustyössä suunnitellaan ja toteutetaan järjestelmä joka liikuttaa kappaleita robottikäsivarrella kolmiuloitteisessa avaruudessa. Kappaleidenpaikkojen määrittämiseen järjestelmä käyttää digitaalisia kuvia. Tässä työssä esiteltävässä harjoitustyötoteutuksessa käytettiin raja-arvoistusta HSV-väriavaruudessa kappaleiden segmentointiin kuvasta niiden värien perusteella. Segmentoinnin tuloksena saatavaa binäärikuvaa suodatettiin mediaanisuotimella kuvan häiriöiden poistamiseksi. Kappaleen paikkabinäärikuvassa määritettiin nimeämällä yhtenäisiä pikseliryhmiä yhtenäisen alueen nimeämismenetelmällä. Kappaleen paikaksi määritettiin suurimman nimetyn pikseliryhmän paikka. Kappaleiden paikat kuvassa yhdistettiin kolmiuloitteisiin koordinaatteihin kalibroidun kameran avulla. Järjestelmä liikutti kappaleita niiden arvioitujen kolmiuloitteisten paikkojen perusteella.

Comparaison objective de systèmes d'imagerie conventionnelle et numérique en mammographie

L'objectif de ce travail est le développement d'une méthode de caractérisation objective de la qualité d'image s'appliquant à des systèmes de mammographie analogique, utilisant un couple écran-film comme détecteur, et numérique, basé sur une technologie semi-conductrice, ceci en vue de la comparaison de leurs performances. La méthode développée tient compte de la gamme dynamique du détecteur, de la détectabilité de structures de haut contraste, simulant des microcalcifications, et de structures de bas contraste, simulant des opacités (nodules tumoraux). La méthode prend également en considération le processus de visualisation de l'image, ainsi que la réponse de l'observateur. Pour réaliser ceci, un objet-test ayant des propriétés proches de celles d'un sein comprimé, composé de différents matériaux équivalents aux tissus, allant du glandulaire à l'adipeux, et comprenant des zones permettant la simulation de structures de haut et bas contraste, ainsi que la mesure de la résolution et celle du bruit, a été développé et testé. L'intégration du processus de visualisation a été réalisée en utilisant une caméra CCD mesurant directement les paramètres de qualité d'image, à partir de l'image de l'objet-test, dans une grandeur physique commune au système numérique et analogique, à savoir la luminance arrivant sur l'oeil de l'observateur. L'utilisation d'une grandeur synthétique intégrant dans un même temps, le contraste, le bruit et la résolution rend possible une comparaison objective entre les deux systèmes de mammographie. Un modèle mathématique, simulant la réponse d'un observateur et intégrant les paramètres de base de qualité d'image, a été utilisé pour calculer la détectabilité de structures de haut et bas contraste en fonction du type de tissu sur lequel celles-ci se trouvent. Les résultats obtenus montrent qu'à dose égale la détectabilité des structures est significativement plus élevée avec le système de mammographie numérique qu'avec le système analogique. Ceci est principalement lié au fait que le bruit du système numérique est plus faible que celui du système analogique. Les résultats montrent également que la méthodologie, visant à comparer des systèmes d'imagerie numérique et analogique en utilisant un objet-test à large gamme dynamique ainsi qu'une caméra, peut être appliquée à d'autres modalités radiologiques, ainsi qu'à une démarche d'optimisation des conditions de lecture des images.<br/><br/>The goal of this work was to develop a method to objectively compare the performance of a digital and a screen-film mammography system in terms of image quality and patient dose. We propose a method that takes into account the dynamic range of the image detector and the detection of high contrast (for microcalcifications) and low contrast (for masses or tumoral nodules) structures. The method also addresses the problems of image visualization and the observer response. A test object, designed to represent a compressed breast, was constructed from various tissue equivalent materials ranging from purely adipose to purely glandular composition. Different areas within the test object permitted the evaluation of low and high contrast detection, spatial resolution, and image noise. All the images (digital and conventional) were captured using a CCD camera to include the visualization process in the image quality assessment. In this way the luminance reaching the viewer?s eyes can be controlled for both kinds of images. A global quantity describing image contrast, spatial resolution and noise, and expressed in terms of luminance at the camera, can then be used to compare the two technologies objectively. The quantity used was a mathematical model observer that calculates the detectability of high and low contrast structures as a function of the background tissue. Our results show that for a given patient dose, the detection of high and low contrast structures is significantly better for the digital system than for the conventional screen-film system studied. This is mainly because the image noise is lower for the digital system than for the screen-film detector. The method of using a test object with a large dynamic range combined with a camera to compare conventional and digital imaging modalities can be applied to other radiological imaging techniques. In particular it could be used to optimize the process of radiographic film reading.

La situación de la venta de contenidos on line en España: un estudio del lector de prensa digital

Actualmente es una realidad la dificultad del cobro por servicios on line. Sobre todo si estos servicios son de carácter generalista y se reproducen en muchos sitios web. Las actuales iniciativas de algunos periódicos para cobrar no tienen todavía el suficiente valor añadido para que los usuarios paguen. Muchas veces el tráfico que pierden, y por lo tanto los ingresos de publicidad on line que dejan de ingresar, representan una mayor cantidad económica que el dinero que les suponen las nuevas suscripciones. En el presente trabajo se pretende estudiar el comportamiento de los lectores de diarios on line, identificando cuales son los principales elementos que este tipo de lectores valoran para posteriormente realizar una buena estrategia de contenidos de pago.

Guia de contingut digital accessible

La guia de contingut digital accessible està dissenyada per donar informació pas a pas sobre com estructurar, formatar i escriure un document realitzat amb Microsoft Word, OpenOffice Writer o Microsoft PowerPoint perquè siguin accessibles. Es descriu com transformar aquests documents a format PDF i mantenir, alhora, les seves propietats d’accessibilitat. També es descriuen aspectes d’accessibilitat que cal tenir en compte a l’hora d’introduir contingut web mitjançant les Sakai i OpenCMS.

A web ontologies framework for digital rights management

In order to improve the management of copyright in the Internet, known as Digital Rights Management, there is the need for a shared language for copyright representation. Current approaches are based on purely syntactic solutions, i.e. a grammar that defines a rights expression language. These languages are difficult to put into practise due to the lack of explicit semantics that facilitate its implementation. Moreover, they are simple from the legal point of view because they are intended just to model the usage licenses granted by content providers to end-users. Thus, they ignore the copyright framework that lies behind and the whole value chain from creators to end-users. Our proposal is to use a semantic approach based on semantic web ontologies. We detail the development of a copyright ontology in order to put this approach into practice. It models the copyright core concepts for creation, rights and the basic kinds of actions that operate on content. Altogether, it allows building a copyright framework for the complete value chain. The set of actions operating on content are our smaller building blocks in order to cope with the complexity of copyright value chains and statements and, at the same time, guarantee a high level of interoperability and evolvability. The resulting copyright modelling framework is flexible and complete enough to model many copyright scenarios, not just those related to the economic exploitation of content. The ontology also includes moral rights, so it is possible to model this kind of situations as it is shown in the included example model for a withdrawal scenario. Finally, the ontology design and the selection of tools result in a straightforward implementation. Description Logic reasoners are used for license checking and retrieval. Rights are modelled as classes of actions, action patterns are modelled also as classes and the same is done for concrete actions. Then, to check if some right or license grants an action is reduced to check for class subsumption, which is a direct functionality of these reasoners.

Using the optical flow to implement a relative virtual mouse controlled by head movements

The following paper introduces the work conducted to create a relative virtual mouse based on the interpretation of head movements and face gesture through a low cost camera and the optical flow of the images. This virtual device is designed specifically as an alternative non-contact pointer for people with mobility impairments in the upper extremities and reduced head control. The proposed virtual device was compared with a conventional mouse, a touchpad and a digital joystick. Validation results show performances close to a digital joystick but far away from a conventional mouse.

Análise da imagem digital para estimativa da área foliar em plantas de laranja "Pêra"

Objetivou-se, com o trabalho, avaliar dois métodos de estimativa da área foliar, em plantas de laranja "Pêra", pela análise da imagem digital obtida com scanner e câmera fotográfica digital. Para determinar a área das folhas, um grupo de discos foi colocado sobre um leitor de scanner, sendo que a imagem obtida foi armazenada. Os mesmos grupos de discos foram fixados sobre cartolina branca e fotografados com câmera fotográfica digital. As imagens obtidas da câmera fotográfica e do scanner foram processadas utilizando ferramentas de um editor de imagem que permite a contagem de pixels de determinada cor, no caso verde. Para a comparação dos métodos, os discos foram submetidos a integrador óptico de área foliar modelo LICOR-3100, utilizando os mesmos agrupamentos. Foram coletadas 20 folhas (cinco em cada quadrante da planta) por parcela de um experimento para comparação de fertilizantes comerciais e doses de zinco, aplicados via foliar, em plantas de sete anos de idade. O experimento foi composto de sete tratamentos e quatro repetições, num total de 28 parcelas. Os dois métodos apresentaram alta correlação com a área estimada pelo integrador óptico de área, considerado como método de referência. O método da análise da imagem obtida com câmera fotográfica, na resolução de 5.0 megapixel, foi mais precisa quando comparada à área estimada pelo integrador óptico de área.

An embedded real-time red peach detection system based on an OV7670 camera, ARM Cortex-M4 processor and 3D Look-Up Tables

This work proposes the development of an embedded real-time fruit detection system for future automatic fruit harvesting. The proposed embedded system is based on an ARM Cortex-M4 (STM32F407VGT6) processor and an Omnivision OV7670 color camera. The future goal of this embedded vision system will be to control a robotized arm to automatically select and pick some fruit directly from the tree. The complete embedded system has been designed to be placed directly in the gripper tool of the future robotized harvesting arm. The embedded system will be able to perform real-time fruit detection and tracking by using a three-dimensional look-up-table (LUT) defined in the RGB color space and optimized for fruit picking. Additionally, two different methodologies for creating optimized 3D LUTs based on existing linear color models and fruit histograms were implemented in this work and compared for the case of red peaches. The resulting system is able to acquire general and zoomed orchard images and to update the relative tracking information of a red peach in the tree ten times per second.

Guia de contingut digital accessible: vídeo

La guia consta d’un conjunt de documents en format pdf i d’una web (http://www.videoaccessible.udl.cat) que es complementen per donar pautes, recomanacions i exemples necessaris per poder mostrar informació en format vídeo digital accessible per a les persones amb diferents discapacitats.

Estudi digital per a guitarra

El treball de fi de carrera "Estudi digital per a guitarra" fa una anàlisi d'un tipus de programari dedicat a la música, i més concretament a l'instrument de la guitarra. En ell s'analitzen programes per gravar àudio, editors de partitures, estudis d'àudio digital, efectes, emuladors, etc., tot muntat sobre un sistema GNU/Linux.

Televisión digital: aspectos generales

Análisis sobre la televisión digital, sus ventajas e inconvenientes. La Recomendación 601 del CCIRR (conversión analógica-digital). Cronología de los acontecimientos más interesantes ocurridos entre 1862 a 1988 que contribuyeron al desarrollo e implantación de la televisión.

Filmipäällystimen nippitapahtuman vaikutus päällystyskoneen ajettavuuteen

Työn tavoitteena oli syventyä filmipäällystimen nippitapahtumaan ja siellä tapahtuviin ilmiöihin. Tämän lisäksi selvitettiin esipäällystysparametrien ja pohjapaperin merkitys filmipäällystimen ajettavuudelle. Erityisesti pyrittiin selvittämään päällystemäärän ja applikointitelojen momenttieron vaikutus ajettavuuteen sekä kiihdytysvaiheessa ilmenevien ajettavuusongelmien syntymekanismit. Työn kokeellinen osa jakaantui kahteen osaan. Ensimmäisessä osassa pyritään löytämään lisäymmärrystä nippitapahtuman ilmiöille joita sitten hyödynnetään toisen osan koeajoissa. Staattisilla kuormituskokeilla tutkittiin telapinnan kokoonpuristumista ja suurnopeus-kamerakuvauksilla nipin geometriaa päällystyskoneen ajon aikana. Applikointitelojen momenttierokoeajoilla pyrittiin selvittämään paperiradan mahdollista luistoa nipissä. MCA-kosteuspitoisuusanalysaattorilla mitattiin nippitapahtuman muutosten vaikutusta filmipäällystimen paluufilmin ominaisuuksiin. Muuttelemalla päällystemäärää ja – jakaumaa sekä applikointitelojen momenttieroa selvitettiin esipäällystysparametrien vaikutus filmipäällystimen ajettavuuteen. Muokkaamalla pohjapaperin absorptiokykyä sekä pastan vedenpidätyskykyä tutkittiin nestepenetraation vaikutusta ajettavuuteen. Telapinnan kokoonpuristuman havaittiin olevan pieni eikä ajon aikana nipin geometriassa havaittu muutoksia. Paperiradan todettiin luistavan nipissä, mutta luistoilmiö oli huomattavasti pienempi mitä nopeuserolukemista voidaan päätellä. Kiihdytysvaiheessa havaittiin selviä muutoksia paluufilmissä, mutta ajon aikana paluufilmi pysyi lähes vakiona. Päällystemäärän todettiin olevan suurin yksittäinen tekijä filmipäällystimen ajettavuudessa ja siihen tulee kiinnittää erityistä huomiota filmipäällystimen kiihdytysvaiheessa. Aukirullauksen levitystelan vaihdon myötä todettiin pohjapaperiin kohdistuvilla kuormituksilla olevan myös suuri merkitys filmipäällystimen ajettavuudelle.

Sildenafil as a therapeutic option for digital ischemic ulceration: case report.

We report the case of a 37-year-old woman who developed critical upper limb ischemia caused by a cervical rib. Because the malformation was initially undiagnosed, a vascular bypass was performed, and failure occurred. Following a 6-month therapy with sildenafil, revascularization of the arm was successful and amputation was avoided. A 6-year follow-up shows a rich collateral network at the compression site and normal values of digital plethysmography. Because hand surgeons often see patients with digital ulcerations and other manifestations of peripheral vascular pathology, therapy of ischemia with sildenafil could be an effective treatment option in patients not responding to classic drugs.