Superinfection exclusion and the long-term survival of honey bees in Varroa-infested colonies

Over the past 50 years, many millions of European honey bee (Apis mellifera) colonies have died as the ectoparasitic mite, Varroa destructor, has spread around the world. Subsequent studies have indicated that the mite’s association with a group of RNA viral pathogens (Deformed Wing Virus, DWV) correlates with colony death. Here, we propose a phenomenon known as superinfection exclusion that provides an explanation of how certain A. mellifera populations have survived, despite Varroa infestation and high DWV loads. Next-generation sequencing has shown that a non-lethal DWV variant ‘type B’ has become established in these colonies and that the lethal ‘type A’ DWV variant fails to persist in the bee population. We propose that this novel stable host-pathogen relationship prevents the accumulation of lethal variants, suggesting that this interaction could be exploited for the development of an effective treatment that minimises colony losses in the future.

Superinfection exclusion and the long-term survival of honey bees in Varroa-infested colonies

Over the past 50 years, many millions of European honey bee (Apis mellifera) colonies have died as the ectoparasitic mite, Varroa destructor, has spread around the world. Subsequent studies have indicated that the mite’s association with a group of RNA viral pathogens (Deformed Wing Virus, DWV) correlates with colony death. Here, we propose a phenomenon known as superinfection exclusion that provides an explanation of how certain A. mellifera populations have survived, despite Varroa infestation and high DWV loads. Next-generation sequencing has shown that a non-lethal DWV variant ‘type B’ has become established in these colonies and that the lethal ‘type A’ DWV variant fails to persist in the bee population. We propose that this novel stable host-pathogen relationship prevents the accumulation of lethal variants, suggesting that this interaction could be exploited for the development of an effective treatment that minimises colony losses in the future.

Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies

Treatment of emerging RNA viruses is hampered by the high mutation and replication rates that enable these viruses to operate as a quasispecies. Declining honey bee populations have been attributed to the ectoparasitic mite Varroa destructor and its affiliation with Deformed Wing Virus (DWV). In the current study we use next-generation sequencing to investigate the DWV quasispecies in an apiary known to suffer from overwintering colony losses. We show that the DWV species complex is made up of three master variants. Our results indicate that a new DWV Type C variant is distinct from the previously described types A and B, but together they form a distinct clade compared with other members of the Iflaviridae. The molecular clock estimation predicts that Type C diverged from the other variants ~319 years ago. The discovery of a new master variant of DWV has important implications for the positive identification of the true pathogen within global honey bee populations.

Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies

Treatment of emerging RNA viruses is hampered by the high mutation and replication rates that enable these viruses to operate as a quasispecies. Declining honey bee populations have been attributed to the ectoparasitic mite Varroa destructor and its affiliation with Deformed Wing Virus (DWV). In the current study we use next-generation sequencing to investigate the DWV quasispecies in an apiary known to suffer from overwintering colony losses. We show that the DWV species complex is made up of three master variants. Our results indicate that a new DWV Type C variant is distinct from the previously described types A and B, but together they form a distinct clade compared with other members of the Iflaviridae. The molecular clock estimation predicts that Type C diverged from the other variants ~319 years ago. The discovery of a new master variant of DWV has important implications for the positive identification of the true pathogen within global honey bee populations.

Entre reglas y excepciones. Es decir, como legitimar las decisiones colectivas

El ensayo examina la cuestión de la aplicación de las reglas y de la capacidad real para tratar casos específicos, llegando a la conclusión de que es la excepción la que confirma la regla, a condición de que sea dialógicamente construida, para que sea interpretable y aplicable por parte de sus numerosos destinatarios en las políticas públicas más complejas y conflictuales, sobre todo a nivel local.

Patrons spatiaux d'une épidémie de la tordeuse des bourgeons de l'épinette sur la Côte-Nord : une approche de télédétection

La tordeuse des bourgeons de l’épinette (Choristoneura fumiferana, TBE) est l’insecte ravageur le plus important de la forêt boréale de l’est de l’Amérique du Nord. Depuis 2006, la région de la Côte-Nord est affectée par une épidémie de TBE et les superficies forestières infestées doublent annuellement. Des images satellitaires Landsat ont été utilisées pour cartographier la sévérité de l’épidémie avec une approche de détection de changements, en utilisant une image pré-épidémie (2004) et une image prise pendant l’épidémie (2013). Des relevés terrains de la défoliation par la TBE ont été utilisés pour développer (R2 = 0,50) une cartographie fiable (R2 de validation = 0,64) et non biaisée de la sévérité des infestations de la TBE sur une échelle continue de sévérité (0-100%) pour la région d’étude. Une analyse des facteurs environnementaux affectant la sévérité des infestations (extraite de la carte de défoliation) a démontré l’importance de la composition forestière en sapin baumier tant à l’échelle locale qu’à l’échelle du paysage. De plus, une analyse de contexte spatial montre que dans les sites peu défoliés (défoliation cumulée < 50%), le meilleur prédicteur est plutôt son abondance à l’échelle du paysage (distance > 500 m). Ces résultats suggèrent une interaction entre les échelles spatiales et temporelles lors des épidémies de TBE.

Evaluaci?n de la aplicaci?n de carb?n activado granular en la filtraci?n del agua clarificada del r?o Cauca

El constante deterioro de las fuentes h?dricas y su uso como recurso en el abastecimiento de agua para consumo humano han conllevado a la b?squeda de la optimizaci?n de los procesos de tratamiento de forma tal que se alcancen condiciones de agua segura con el menor riesgo posible de afectaciones a la salud de la poblaci?n. Es por esto que los sistemas de abastecimiento de agua potable han adoptado estrategias enmarcadas dentro de los planes de seguridad del agua mediante la reducci?n de la contaminaci?n en la fuente de abastecimiento, la remoci?n o reducci?n de diferentes contaminantes mediante los procesos de tratamiento y la prevenci?n de la contaminaci?n del agua en el sistema de almacenamiento y distribuci?n al usuario final. Al observar que la filtraci?n es una de las etapas m?s cr?ticas dentro del tratamiento por ser la ?ltima barrera f?sica para la remoci?n de part?culas presentes en el agua; se plante? este proyecto de grado para estudiar a escala de laboratorio el uso de carb?n activado granular en el proceso de filtraci?n de agua clarificada del Rio Cauca, con el fin de analizar la eficiencia de remoci?n de turbiedad y materia org?nica medida como UV254 y as? establecer el alcance de los valores l?mite recomendados por las entidades internacionales para la disminuci?n del riesgo microbiol?gico y el riesgo cr?nico que pueda estar asociado a la presencia de materia org?nica en el agua para consumo humano. Se emple? carb?n activado granular de origen bituminoso y arena en seis diferentes configuraciones como medio filtrante principal en la etapa de filtraci?n (50%CAG ? 50% Arena, 65% CAG ? 35% Arena, 75% CAG ? 25% Arena, 85% CAG ? 15% Arena, 90% CAG ? 10% Arena y 100% CAG). Se consider? adem?s una configuraci?n con antracita y arena (70% Antracita ? 30% Arena) para comparar el comportamiento de ambos materiales filtrantes en el tratamiento de agua resultante del proceso de clarificaci?n efectuado por la Planta de Tratamiento de Agua Potable Puerto Mallarino en la ciudad de Cali. Se emple? un sistema de filtraci?n en columnas con distribuci?n de agua mediante conducciones reguladas a un caudal constante de 12 mL/min. El efluente de cada unidad de filtros fue evaluado y comparado con el afluente mediante la medici?n de Color Aparente, Turbiedad, UV254, pH y Conductividad. Se obtuvo como resultado que la configuraci?n C5 con 90% de CAG y 10% Arena logr? una mayor estabilidad de la turbiedad obteniendo valores m?nimos por debajo de 2 UNT (MAVDT), 0.5 UNT (WHO) y 0.15 UNT (EPA) y aunque no tuvo diferencias significativas comparado con el filtro de Antracita y Arena, si present? un mejor desempe?o en la remoci?n de turbiedad debido al alcance de un mayor n?mero de datos por debajo de 0.3 UNT. En cuanto a la eficiencia de remoci?n de materia org?nica en el agua medida como UV254 se observaron mejores resultados para la configuraci?n C4 con 85% de CAG y 15% Arena y aunque las eficiencias de remoci?n de materia org?nica no fueron significativamente altas se observa claramente la ventaja que presenta el uso de CAG como medio filtrante adsorbente comparado con el medio convencional de Antracita y Arena. La obtenci?n de bajas eficiencias de remoci?n fue debido al contenido de material en suspensi?n ya que los filtros de CAG trabajaron en la retenci?n de dicho material afectando considerablemente la capacidad de adsorci?n. Mediante esta investigaci?n se comprob? que la selecci?n adecuada de las condiciones operacionales de los filtros de CAG puede generar agua comparativamente similar o superior a los filtros conformados con materiales convencionales como Antracita y arena. De igual forma, el uso de CAG como medio filtrante para el tratamiento de agua del Rio Cauca es un insumo que puede aportar a una posible estrategia para disminuir el riesgo microbiol?gico y el riesgo cr?nico asociado con el contenido de materia org?nica en el agua distribuida a la poblaci?n cale?a

Aquatic weeds hotspots in the Lake Victoria basin Uganda and on Lake Kyoga: implications for their management

Proliferation of invasive aquatic weeds has developed into a major ecological and socio economic issue for many regions of the world. As a consequence, inference on where to target control and other management efforts is critical in the management of aquatic weeds (Ibáñez et al., 2009). Notwithstanding, aquatic systems in Uganda in general and in the basins of Lakes Victoria and Kyoga in particular, have fallen victims to aquatic weeds invasion and subsequent infestation. If these aquatic weeds infestations are to be minimized and their impacts mitigated, management decisions ought to be based on up-to-date data and information in relation to location of infestation hotspots. Aquatic systems in the basins of the two production systems are important sources of livelihoods especially from fish production and trade yet they are prone to infestation by aquatic weeds. Thus, the invasion and subsequent infestation of aquatic ecosystems by aquatic weeds pose a major conservation threat to various aquatic resources (Catford et al., 2011; Kayanja, 2002). This paper examines the extent to which aquatic weeds have infested aquatic ecosystems in the basins of Lakes Victoria and Kyoga. The information is expected to guide management of major aquatic weeds through rational allocation of the scarce resources by targeting hotspots.

Ecological drivers of a vector borne pathogen: distribution and abundance of Borrelia burgdorferi sensu lato and its vector Ixodes ricinus in Scotland

Vector-borne disease emergence in recent decades has been associated with different environmental drivers including changes in habitat, hosts and climate. Lyme borreliosis is among the most important vector-borne diseases in the Northern hemisphere and is an emerging disease in Scotland. Transmitted by Ixodid tick vectors between large numbers of wild vertebrate host species, Lyme borreliosis is caused by bacteria from the Borrelia burgdorferi sensu lato species group. Ecological studies can inform how environmental factors such as host abundance and community composition, habitat and landscape heterogeneity contribute to spatial and temporal variation in risk from B. burgdorferi s.l. In this thesis a range of approaches were used to investigate the effects of vertebrate host communities and individual host species as drivers of B. burgdorferi s.l. dynamics and its tick vector Ixodes ricinus. Host species differ in reservoir competence for B. burgdorferi s.l. and as hosts for ticks. Deer are incompetent transmission hosts for B. burgdorferi s.l. but are significant hosts of all life-stages of I. ricinus. Rodents and birds are important transmission hosts of B. burgdorferi s.l. and common hosts of immature life-stages of I. ricinus. In this thesis, surveys of woodland sites revealed variable effects of deer density on B. burgdorferi prevalence, from no effect (Chapter 2) to a possible ‘dilution’ effect resulting in lower prevalence at higher deer densities (Chapter 3). An invasive species in Scotland, the grey squirrel (Sciurus carolinensis), was found to host diverse genotypes of B. burgdorferi s.l. and may act as a spill-over host for strains maintained by native host species (Chapter 4). Habitat fragmentation may alter the dynamics of B. burgdorferi s.l. via effects on the host community and host movements. In this thesis, there was lack of persistence of the rodent associated genospecies of B. burgdorferi s.l. within a naturally fragmented landscape (Chapter 3). Rodent host biology, particularly population cycles and dispersal ability are likely to affect pathogen persistence and recolonization in fragmented habitats. Heterogeneity in disease dynamics can occur spatially and temporally due to differences in the host community, habitat and climatic factors. Higher numbers of I. ricinus nymphs, and a higher probability of detecting a nymph infected with B. burgdorferi s.l., were found in areas with warmer climates estimated by growing degree days (Chapter 2). The ground vegetation type associated with the highest number of I. ricinus nymphs varied between studies in this thesis (Chapter 2 & 3) and does not appear to be a reliable predictor across large areas. B. burgdorferi s.l. prevalence and genospecies composition was highly variable for the same sites sampled in subsequent years (Chapter 2). This suggests that dynamic variables such as reservoir host densities and deer should be measured as well as more static habitat and climatic factors to understand the drivers of B. burgdorferi s.l. infection in ticks. Heterogeneity in parasite loads amongst hosts is a common finding which has implications for disease ecology and management. Using a 17-year data set for tick infestations in a wild bird community in Scotland, different effects of age and sex on tick burdens were found among four species of passerine bird (Chapter 5). There were also different rates of decline in tick burdens among bird species in response to a long term decrease in questing tick pressure over the study. Species specific patterns may be driven by differences in behaviour and immunity and highlight the importance of comparative approaches. Combining whole genome sequencing (WGS) and population genetics approaches offers a novel approach to identify ecological drivers of pathogen populations. An initial analysis of WGS from B. burgdorferi s.s. isolates sampled 16 years apart suggests that there is a signal of measurable evolution (Chapter 6). This suggests demographic analyses may be applied to understand ecological and evolutionary processes of these bacteria. This work shows how host communities, habitat and climatic factors can affect the local transmission dynamics of B. burgdorferi s.l. and the potential risk of infection to humans. Spatial and temporal heterogeneity in pathogen dynamics poses challenges for the prediction of risk. New tools such as WGS of the pathogen (Chapter 6) and blood meal analysis techniques will add power to future studies on the ecology and evolution of B. burgdorferi s.l.

Lantana: current management status and future prospects.

Lantana camara L. is a significant weed of which there are some 650 varieties in over 60 countries or island groups. It has been the focus of biological control attempts for a century, yet still poses major problems in many regions. Lantana has a significant impact on economic and environmental areas and is difficult to control. The key to good management of lantana is constant vigilance. Repeated control of new regrowth is critical to success. Control of new infestations should be a priority because the species is able to expand its range during good seasons, but does not die out during poor conditions. This book is a resource for land managers and researchers on methods of lantana control, particularly biocontrol.

Survey on parasites of Rutilus frisii Kutum in South west of Caspian Sea with the emphasis of pathology of Dactylogyrus frisii and morphological identification of Paradiplozoon sp and Anisakis sp

Rutilus frisii Kutum is one of the most precious fish in the Caspian Sea. Investigation of the various aspects of its biocharactristics. Including its parasite fauna and ecological aspects are of prime importance. In this study the farmed kutum fry were on the focus of investigation in various seasons of the year and prior to their being released in the sea. This included also the study on the kutum spawners caught both from liver and the sea. The results were that 17 external and internal parasite species were distinct within different organs which were further identified down to genus and species. The single celled parasites identified included Ichthyophthirius multifilils, Chilodonella hexastica, Chilodonella pisicola, Trichodina sp Along with the monogene parasites that included Paradiplozoon chazaricum, D. rarissimus, D. turaliensis, D. nybelini, Dactylogyrus frisii. Meanwhile Diplostomum spathaceum constituted the single eyed parasites and the intestinal termatode were Aspidogaster limacoides, Asymphyoldora kubanicum as well as Bothriocephalus gowkongeniss as the sestads. The nematodes defrentiated were Raphidascaris acus, Dioctophyma renale, and Eustrongylides excisus followed by Lernaea cyprinacea as a crustacean. In this study, infestations by single celled parasites, crustaceans and sestod were found to be present only among the farmed kutum fry which varied in terms of percentage and intensity of infection as well as the parasite species and season of the year. The highest percentage of infection among kutum fry and spawners in both fresh water and in the sea during all seasons belonged to monogene parasites (33%). This was up to 100% among spawners. Infection caused by nematodes was exclusively detected among riverine spawners (7.5-5%) and the infection by Asymphyoldora kubanicum and Aspidogaster limacoides among Spawners caught at Sea and rivers varied within different seasons of the year. The infestation of Metacercer diplostomum spathaceum among kutum fry was 12% which compared to spawners was in slightly higher level. The study could identify Dioctophyma renale for the first time in the country and Eustrongylidis excisu was also detected among Rutilus frisii kutum.

Optimizing Western Flower Thrips Management on French Beans by Combined Use of Beneficials and Imidacloprid

Western flower thrips (WFT), Frankliniella occidentalis (Pergande), is an important pest of vegetable crops worldwide and has developed resistance to many insecticides. The predatory mites Neoseiulus (=Amblyseius) cucumeris (Oudemans), the entomopathogenic fungus Metarhizium anisopliae (Metsch.), and an insecticide (imidacloprid) were tested for their efficacy to reduce WFT population density and damage to French bean (Phaseolus vulgaris L.) pods under field conditions in two planting periods. Metarhizium anisopliae was applied as a foliar spray weekly at a rate of one litre spray volume per plot while imidacloprid was applied as a soil drench every two weeks at a rate of two litres of a mixture of water and imidacloprid per m(2). Neoseiulus cucumeris was released every two weeks on plant foliage at a rate of three mites per plant. Single and combined treatment applications reduced WFT population density by at least three times and WFT damage to French bean pods by at least 1.7 times compared with untreated plots. The benefit-cost ratios in management of WFT were profitable with highest returns realized on imidacloprid treated plots. The results indicate that M. anisopliae, N. cucumeris, and imidacloprid have the potential for use in developing an integrated pest management program against WFT on French beans.

Early allergen exposure and atopic eczema

Background The relationship between exposure to indoor aeroallergens in early life and subsequent eczema is unclear. We have previously failed to show any significant associations between early life exposure to house dust mite and cat fur allergens and either sensitization to these allergens or wheeze. We have also previously reported a lower prevalence of parent-reported, doctor-diagnosed eczema by age 2 years for children exposed to higher concentrations of house dust mite, but no other associations with other definitions of eczema or for exposure to cat allergen. Objectives To extend the exposure–response analysis of allergen exposure and eczema outcomes measured up to age 8 years, and to investigate the role of other genetic and environmental determinants. Methods A total of 593 children (92Æ4% of those eligible) born to all newly pregnant women attending one of three general practitioner surgeries in Ashford, Kent, were followed from birth to age 8 years. Concentrations of house dust mite and cat allergen were measured in dust samples collected from the home at 8 weeks after birth. The risk of subsequent eczema as defined by the U.K. diagnostic criteria was determined according to different levels (quintiles) of allergen exposure at birth. Results By age 8 years, 150 (25Æ3%) children had met the diagnostic criteria for eczema at least once. Visible flexural dermatitis was recorded at least once for 129 (28Æ0%). As in other studies, parental allergic history was positively associated with most eczema outcomes, as were higher maternal education and less crowded homes. No clear linear associations between early exposure to house dust mite or cat allergen were found, regardless of the definition of eczema used. The risk of eczema appeared to increase for the three lowest quintiles of house dust mite allergen exposure (odds ratio, OR 1Æ37 for third quintile compared with first), and then to fall for the two highest quintiles (OR 0Æ66 and 0Æ71) even after controlling for confounding factors. Conclusions The lack of any clear exposure–disease relationship between allergens in early life and subsequent eczema argues against allergen exposure being a major factor causing eczema. If the lower levels of eczema at higher levels of house dust mite are confirmed, then interventions aimed at reducing house dust mite in early infancy could paradoxically increase the risk of subsequent eczema.

Zmienność genetyczna, specyficzność żywicielska i zdolność do przenoszenia wirusa mozaiki smugowatej pszenicy (WSMV) w obrębie kompleksu gatunków Aceria tosichella

Wydział Biologii: Instytut Biologii Środowiska

Infestation of Tunga penetrans in villages near Zomba Central Hospital

An outbreak of Tunga Penetrans (Jigger Flea) infestation affecting a number of villages near to a Central Hospital in Malawi is described. Due to the large number of affected individuals, high parasitic load, and extended duration of infection an alternative to the recommended approach of surgical removal of the flea was required. Benzyl benzoate paint and liquid paraffin had been used in local Primary Healthcare settings previously and topical treatment with antiparasitic agents has been advocated in the literature, particularly for severe infestation. Benzyl benzoate and liquid paraffin were applied topically to four adults with numerous jigger flea burrows, and their progress assessed regularly. After completion of 7 days of treatment patients noted that fleas were dislodging spontaneously, and that embedded parasites had not increased in size to the same extent that untreated fleas had in previous infestations. Following confirmation of the viability of its implementation in a resource-poor setting, this treatment regimen has subsequently been adopted by the local branch of the District Health Office for distribution to infected communities.