Fisheries assessment of Biscayne Bay 1983

Creel and trawl surveys of Biscayne Bay were carried out in 1982-1983 to assess commercial fish and macro-invertebrate habitats and fisheries. Dredged and/or barren bottom was dramatically less productive than seagrass, algae or hard bottom areas. Low fish abundance and diversity in north Biscayne Bay appeared to be correlated with high turbidity and low seagrass abundance. Substantive increases in fish and crustacean productivity in north Biscayne Bay will occur only if seagrass communities can be re-established. Deeper dredged areas in North Bay will not likely become recolonized with seagrass even if turbidity levels are reduced. Hard bottom areas in South Bay are associated with high diversity of fish fauna and serve as nursery areas for several highly desirable species (e.g. hogfish, yellowtail snapper, lane snapper). The area between Julia Tuttle and 79th Street Causeways, which had very dense seagrass abundance, was the richest area on either North or South Biscayne Bay for juvenile fish and shrimp. This basin can serve as a model for the potential of the remainder of North Bay.

The Southeast Bering Sea Ecosystem: implications for marine resource management (Final Report: Southeast Bering Sea Carrying Capacity).

Southeast Bering Sea Carrying Capacity (SEBSCC, 1996–2002) was a NOAA Coastal Ocean Program project that investigated the marine ecosystem of the southeastern Bering Sea. SEBSCC was co-managed by the University of Alaska Fairbanks, NOAA Alaska Fisheries Science Center, and NOAA Pacific Marine Environmental Laboratory. Project goals were to understand the changing physical environment and its relationship to the biota of the region, to relate that understanding to natural variations in year-class strength of walleye pollock (Theragra chalcogramma), and to improve the flow of ecosystem information to fishery managers. In addition to SEBSCC, the Inner Front study (1997–2000), supported by the National Science Foundation (Prolonged Production and Trophic Transfer to Predators: Processes at the Inner Front of the S.E. Bering Sea), was active in the southeastern Bering Sea from 1997 to 1999. The SEBSCC and Inner Front studies were complementary. SEBSCC focused on the middle and outer shelf. Inner Front worked the middle and inner shelf. Collaboration between investigators in the two programs was strong, and the joint results yielded a substantially increased understanding of the regional ecosystem. SEBSCC focused on four central scientific issues: (1) How does climate variability influence the marine ecosystem of the Bering Sea? (2) What determines the timing, amount, and fate of primary and secondary production? (3) How do oceanographic conditions on the shelf influence distributions of fish and other species? (4) What limits the growth of fish populations on the eastern Bering Sea shelf? Underlying these broad questions was a narrower focus on walleye pollock, particularly a desire to understand ecological factors that affect year-class strength and the ability to predict the potential of a year class at the earliest possible time. The Inner Front program focused on the role of the structural front between the well-mixed waters of the coastal domain and the two-layer system of the middle domain. Of special interest was the potential for prolonged post-spring-bloom production at the front and its role in supporting upper trophic level organisms such as juvenile pollock and seabirds. Of concern to both programs was the role of interannual and longer-term variability in marine climates and their effects on the function of sub-arctic marine ecosystems and their ability to support upper trophic level organisms.

Quantitative determination of the timing of otolith ring formation from marginal increments in four marine teleost species from northwestern Australia

The sectioned otoliths of four fish species from a tropical demersal trawl fishery in Western Australia revealed a series of alternating trans-lucent and opaque zones in reflected light. The translucent zones, referred to as growth rings, were counted to determine fish ages. The width of the opaque zone on the periphery of the otolith section as a proportion of the width of the previous opaque zone (index of completion) was used to determine the periodicity of growth-ring formation. This article describes a method for modeling changes in the index of ring completion over time, from which a parameter for the most probable time of growth-ring formation (with confidence intervals) can be determined. The parameter estimate for the timing of new growth-ring formation for Lethrinus sp. 3 was from mid July to mid September, for Lutjanus vitta from early July to the end of August, for Nemipterus furcosus from mid July to late September, and for Lutjanus sebae from mid July to mid November. The confidence intervals for the timing of formation of growth rings was variable between species, being smallest for L. vitta, and variable between fish of the same species with different numbers of growth rings. The stock assessments of these commercially important species relies on aging information for all the age classes used in the assessment. This study demonstrated that growth rings on sectioned otoliths were laid down annually, irrespective of the number of growth rings, and also demonstrated that the timing of ring formation for these tropical species can be determined quantitatively (with confidence intervals.

麻疯树种子油体以及种子萌发的蛋白质组学研究

麻疯树（Jatropha curcas L.）属大戟科麻疯树属多年生亚乔木，耐干旱、高温和贫瘠等，具很强的抗逆性，在干热河谷等边际土地上生长良好。其种子富含油脂，是制备生物柴油的理想材料，为重要的能源植物之一。油体（oil body）是种子细胞中重要的细胞器, 脂肪酸以三脂酰甘油（triacylglyeerols，TAG）的形式储存其内，是种子萌发和幼苗生长时所需碳骨架和能量的主要来源。种子萌发为生命萌动并构建成自养个体的过程，是高等植物生长发育中的重要事件。 本论文运用高通量的蛋白质组学研究手段，结合电镜技术和生理学分析，对麻疯树种子油体以及种子萌发过程中蛋白质表达、生理学响应和细胞结构变化进行了研究。 从麻疯树种子胚乳中分离油体，再从油体中提取蛋白，经双向凝胶电泳后，得到油体蛋白质组的二维表达谱，这些蛋白质主要分布在等电点5 ~ 10、分子量12 ~ 66 kDa的范围内;图像分析表明，油体蛋白质组至少有141个蛋白点，其中酸性蛋白74个，碱性蛋白67个，表达丰度较高的多为低分子量碱性蛋白。对其中36个重要蛋白点进行LC-MS/MS质谱分析，得到鉴定的蛋白分别为30个基因的表达产物，主要包括油体重要的结构蛋白油质蛋白（oleosin）和caleosin，麻疯树种子毒蛋白curcin，以及新鉴定得到的另一种可能的麻疯树种子毒蛋白，人体过敏反应蛋白橡胶延伸因子（REF）。还有四个与脂肪酸代谢相关的酶，其中3-羟酰-酰基载体蛋白（ACP）脱水/催化酶和醇酰基转移酶与脂肪酸合成有关，而脂氧合酶和磷脂酶D在脂肪酸降解中发挥作用，显示部分脂肪酸代谢相关的酶在油体储存状态就已附着在油体上，为种子萌发时动员油脂做好了准备。 麻疯树种子胚乳发达，在32℃湿润土壤中很快就会萌动，胚轴伸长露出胚根，长出新根，约4天后形成出土子叶幼苗。种子萌发过程中胚乳主要成分含量测定表明，含水量在前24小时迅速上升，至48小时增加缓慢，此后开始较快上升，可分为三个阶段，呈现“S”型的变化;粗脂肪和粗蛋白在前两个阶段变化不大，进入第三阶段后其含量迅速下降，前者先于后者，分别在萌发后72小时和96小时后开始明显减少，说明被大量降解、转化，供萌发生长利用，其中主要组分亚油酸最为明显。细胞超微结构观察发现，排列整齐充满整个胚乳细胞的油体和嵌合在油体中的蛋白储存泡在种子萌发过程中，随着线粒体、乙醛酸循环体和液泡的出现增多或增大而被逐渐解体、减少或消失;同时，发现脂肪酸主要在乙醛酸循环体、蛋白颗粒主要在液泡中被降解或转化。 蛋白质组学分析表明，麻疯树种子在萌发72小时过程中变化量在两倍以上的差异蛋白点共有141个，所有的差异蛋白均通过LC-MS/MS分析和NCBI蛋白数据库搜索得到鉴定。其中包括多个参与降解储藏油脂的酶，如乙醛酸循环途径中的顺乌头酸酶，异柠檬酸裂解酶和苹果酸脱氢酶等，均从种子萌发48小时开始表达量明显上升;葡糖异生途径中的酶在种子萌发中的积累略晚于乙醛酸循环途径，如烯醇酶，磷酸甘油酸变位酶，磷酸甘油酸激酶，磷酸丙糖异构酶和醛缩酶大多在萌发约60小时后表达量开始上调。分析结果表明，乙醛酸循环途径在种子萌发48小时后被激活，与电镜观察胚乳细胞发现油脂在萌发48小时时开始被动员相一致，因而大规模的油脂动员开始于种子萌发的第三阶段。 同时，蛋白质组学的分析结果也得到了种子胚乳组分变化分析及电镜观察结果的印证。超微细胞结构观察显示种子储藏蛋白降解在萌发第二阶段启动，主要在液泡中进行降解。粗脂肪的含量在72小时时显著降低，而电镜观察显示此时胚乳细胞中出现中央大液泡，出现大量的线粒体和乙醛酸循环体，细胞结构发生重大变化，萌发96小时后仅有少量油体残留于胚乳细胞中，这些都为储藏油脂在麻疯树种子萌发过程中的降解方式提供了重要证据。许多其他的功能蛋白在种子萌发过程中也发生了变化，表明种子萌发过程中不仅发生储藏物质的动员，也发生抗逆反应以及植物形态的构建等众多其他生理生化反应。 本研究首次对麻疯树种子油体进行了蛋白组成分析，并结合电镜技术及生理分析深入探讨了种子储藏物质在萌发中的降解方式，为更好的理解油体结构、木本油料种子的萌发机制和对麻疯树进行品种的改良提供了参考。

农牧交错区不同植物群落的根冠比特征及土壤呼吸日动态的观测研究

本论文对草地群落地上/地下生物量构成、根冠比特征及其影响因子以及土壤呼吸测定方法比较等的国内外研究进展和主要成果进行了综述，在此基础之上对地处我国北方农牧交错带中段的内蒙古多伦县境内的18种草地群落（包括天然草地和人工草地群落）进行了相关内容的研究工作。 在2002年生长季期间，对这18个植物群落中选取的16个进行了群落学调查，测定了其地上、地下生物量，同时测定了土壤含水量、土壤容重、土壤全氮含量和土壤有机质含量。分别分析了地上、地下生物量以及根冠比（root to shoot ratio）与这些立地因子间的相关关系。同期，从18个群落中选定10个代表性群落测定其土壤呼吸速率，测定方法选用了动态红外气体分析法 (Infra red gas analysis， abbreviated as IRGA)和碱液吸收法（Alkali absorption, abbreviated as AA）。对这两种方法的测定结果进行了比较分析，同时分析了不同群落间土壤呼吸变化与土壤水分和养分状况等的相关关系。主要结论如下： ①16种植物群落的地上和地下生物量差异明显，地上生物量变化范围在80~500 g•m-2之间;相比之下，地下生物量的变化范围要大得多，16个群落中地下生物量最小的为猪毛菜群落，最大的为拂子茅群落，分别为533 g•m-2和2590 g•m-2。群落的根冠比在1.5～11.21之间，平均根冠比为 5.69。 ②土壤含水量对地上和地下生物量有着重要的影响，土壤含水量高的样地（羊草样地）较含水量低（小米蒿样地）的样地地上生物量高，反之亦然。但含水量与地下生物量之间的这种关系却不明显，即土壤含水量高的样地其地下生物量并不一定比含水量低的样地地下生物量高;根冠比与土壤含水量之间基本上呈负相关。土壤全氮含量和有机质含量与地上、地下生物量也存在着一定的正相关关系，而土壤容重却与生物量存有负相关关系;根冠比与土壤全氮、有机质和容重的关系正好与此相反，即根冠比与全氮和有机质含量呈负相关，与容重为正相关。 ③10种植物群落土壤呼吸的昼夜变化比较明显，均为单峰型曲线，主要受土壤温度的驱动，但同时也受到当日降水情况和云量、风速等气象因子的较大影响。因此，影响到这些群落土壤呼吸日动态的一致性，使得规律性并不明显。 ④用碱液吸收法和动态密闭气室法测定的10个群落的土壤呼吸速率变化范围分别为394~894mg C•m-2•d-1和313~2043 mg C•m-2•d-1，其中碱液吸收法测定结果平均为动态气室法的67.5%，明显低于动态密闭气室法。 ⑤两种测定方法具有很好的相关性，R2为0.8739。本研究中发现，在土壤呼吸速率低的情况下，两种方法的测定结果十分接近，甚至碱液吸收法的测定结果稍大于动态密闭气室法;而在土壤呼吸速率较高的情况下，动态密闭气室法测定结果则显著高于碱液吸收法。上述结果与国内外同类研究的结果高度一致，从而为校正我们以往采用碱液吸收法在该区域的测定结果提供了可靠依据。 ⑥各个群落间的土壤呼吸变化与立地土壤水分和土壤养分之间存有一定的相关关系，但并不显著，可能与这些群落土壤呼吸测定不是在同一天进行有关。

Numerical modelling of lubricated foil rolling

A model of lubricated cold strip rolling (1, 2) is extended to the thin foil regime. The model considers the evolution of asperity geometry and lubricant pressure through the bite, treating the strip using a conventional slab model. The elastic deflections of the rolls are coupled into the problem using an elastic finite element model. Friction between the roll and the asperities on the strip is modelled using the Coulomb and Tresca friction factor approaches. The shear stress in the Coulomb friction model is limited to the shear yield stress of the strip. A novel modification to these standard friction laws is used to mimic slipping friction in the reduction regions and sticking friction in a central neutral zone. The model is able to reproduce the sticking and slipping zones predicted by Fleck et al. (3). The variation of rolling load, lubricant film thickness and asperity contact area with rolling speed is examined, for conditions typical of rolling aluminium foil from a thickness of 50 to 25 μm. T he contact area and hence friction rises as the speed drops, leading to a large increase in rolling load. This increase is considerably more marked using Coulomb friction as compared with the friction factor approach. Forward slip increases markedly as the speed falls and a significant sticking region develops.

A study on growth of Metapenaeus monoceros (Fabricius) of Maputo Bay

Biological data on Metapenaeus monoceros has been regularly collected in Maputo Bay since 1968. The main objective of this report is to study growth as a function of the size, since this is one of the basic parameters for population dynamics. As the possibility of studying shrimp growth by modal progression analysis depends very much on the space-time configuration of sampling, the years 1968 and 1969 were chosen to study growth of the population available to the bottom trawl used by the fishing industry. In those years sampling was very frequent (twice a week) and the samples were collected from a rather small fishing area. Complementary data on the spawning, juvenile phase and recruitment to the fishery was used to establish the relationship between the different stages of the life cycle and to obtain an age/length key. Data on juveniles in estuaries was only available for 1969 and 1973.

Selective biochemical studies in a freshwater prawn, Macrobrachium nobilli(Crustecea: Palaemodinae)

Calcium and phosphorous contents of abdomen and cheliped muscles of juvenile, male and female Macrobrchium nobilii were determined from field collected samples. In all the three groups calcium concentration was higher in chelipeds while the phosphorous content was more in abdomen muscles than in the chelipeds. However between three groups the calcium content varied significantly both in the abdomen and cheliped muscles (P

Modelling of long-term ground response to tunnelling under St James's Park, London

Following a tunnel excavation in low-permeability soil, it is commonly observed that the ground surface continues to settle and ground loading on the tunnel lining changes, as the pore pressures in the ground approach a new equilibrium condition. The monitored ground response following the tunnelling under St James's Park, London, shows that the mechanism of subsurface deformation is composed of three different zones: swelling, consolidation and rigid body movement. The swelling took place in a confined zone above the tunnel crown, extending vertically to approximately 5 m above it. On the sides of the tunnel, the consolidation of the soil occurred in the zone primarily within the tunnel horizon, from the shoulder to just beneath the invert, and extending laterally to a large offset from the tunnel centreline. Above these swelling and consolidation zones the soil moved downward as a rigid body. In this study, soil-fluid coupled three-dimensional finite element analyses were performed to simulate the mechanism of long-term ground response monitored at St James's Park. An advanced critical state soil model, which can simulate the behaviour of London Clay in both drained and undrained conditions, was adopted for the analyses. The analysis results are discussed and compared with the field monitoring data. It is found that the observed mechanism of long-term subsurface ground and tunnel lining response at St James's Park can be simulated accurately only when stiffness anisotropy, the variation of permeability between different units within the London Clay and non-uniform drainage conditions for the tunnel lining are considered. This has important implications for future prediction of the long-term behaviour of tunnels in clays.

Structural features of geostrophic circulation in open region of the South China Sea

On the basis of observation data of water temperature and salinity the mean seasonal geostrophic circulation in open region of the South China Sea (SCS) was computed by the dynamic method relative to the 800 decibar reference surface. The results of computation let go to following notices: In both main monsoons (winter and summer) there are two main geostrophic eddies: the anticlockwise eddy in the northern and northwestern part, and the clockwise eddy in the southern part of the SCS with corresponding divergent and convergent zones. The main frontal zones go along the middle latitudes of the sea from the southern continental shelf of Vietnam to the area west of Luzon Island. The strength and stability of the current in winter are higher than in summer. The Kuroshio has an enough strong branch intruding into the SCS through Bashi Strait in winter creating in the sea the water structure similar to that of the Northwest Pacific subtropical and tropical regions. In summer the Kuroshio water can intrude directly only into the area southwest of Taiwan.

Genetic diversity of Bartail flathead (Platycephalus indicus (Linnaeus,1758)) using AFLP markers in Persian Gulf

Platycephalus indicus is a large benthic fish that inhabits temperate and tropical coastal waters of the Indo-West Pacific and found on sand or mud bottom in vary shallow area of estuary and near shore to depth of 25m. This species is dominant species of platycephalidae family, in Khuzestan, Bushehr and Hormozgan provinces and mainly is captured by bottom trawl, gillnet and moshta in Hormozgan. This study was designed to evaluate population variation and differentiation of bartail flathead (Platycephalus indicus (Linnaeus, 1785))in the Iranian waters of Persian Gulf using the morphometric and meristic characters and by AFLP marker. . A total 180 fish specimens were collected by gill net from six station(khor mosa, bahrekan, shif, motaf, charak and bandar abbas) that was 30 individual related to every station in Iranian shores of Persian Gulf . 28 morphometric factors and 11meristic specialties were measured and morphometric factors was standardized with Beacham formula. Univariate analysis of variance (One-way ANOVA) revealed significant differences with varying degrees between the means for 21 standardized morphometric measurements and 6 meristic counts that showed high significant differences between the six stations sampling. Discriminate function analysis (DFA) or the overall random assignment of individuals into their original groups was for morphometric and meristic characters was 47.9% and 53.9% respectively. The data were subjected to a principle component analysis (PCA) which grouped in eight and four factors for morphometric and meristic charactersrespectively.. Genetic diversity of six populations of bartail flathead (Platycephalus indicus) was investigated using amplified fragment length polymorphism (AFLP). A total of 118 reproducible bands amplified with ten AFLP primer combinations were obtained from 42 fishes that were collected from six different locations in the northern of Persian Gulf. The percentage of polymorphic bands was 57.06%. Average of Nei’s genetic diversity was 0.200±0.008, and Average of Shannon’s index was 0.300±0.011. The results of AMOVA analysis indicated that 66% of the genetic variation contained within populations and 34% occurred among populations and gene flow was 0.6454.The estimated level of population differentiation asmeasured by average Fst value across all loci was 0.327. Plotting discriminant functions 1 and 2 and UPGMA dendrograms based on Euclidian distance and genetic distance also showed at least five separate populations of bartail flathead in the northern Persian Gulf.

Cage culture of sea bass in Malaysia

The article discusses the cage culture practice of sea bass (Lates calcarifer) in Malaysia. Problems on feed and seed supply and overcrowding are also discussed. Despite these problems, seabass cage culture still continuously booms.

Key for the identification of the East African marine fishes to family level

The paper provides key for the identification of the East African marine fishes. Just like in most determination keys this one is based on the "either-or" principle, i.e. there is a single alternatIve at each point. A specimen either fits all the characters recorded, or fails to conform to one or more characters and you should then proceed to the next number, keeping this up until the fish to be identified does fit all the characters.

Core design options for high conversion BWRs operating in Th- 233U fuel cycle

Several options of fuel assembly design are investigated for a BWR core operating in a closed self-sustainable Th-233U fuel cycle. The designs rely on an axially heterogeneous fuel assembly structure consisting of a single axial fissile zone "sandwiched" between two fertile blanket zones, in order to improve fertile to fissile conversion ratio. The main objective of the study was to identify the most promising assembly design parameters, dimensions of fissile and fertile zones, for achieving net breeding of 233U. The design challenge, in this respect, is that the fuel breeding potential is at odds with axial power peaking and the core minimum critical power ratio (CPR), hence limiting the maximum achievable core power rating. Calculations were performed with the BGCore system, which consists of the MCNP code coupled with fuel depletion and thermo-hydraulic feedback modules. A single 3-dimensional fuel assembly having reflective radial boundaries was modeled applying simplified restrictions on the maximum centerline fuel temperature and the CPR. It was found that axially heterogeneous fuel assembly design with a single fissile zone can potentially achieve net breeding, while matching conventional BWR core power rating under certain restrictions to the core loading pattern design. © 2013 Elsevier B.V. All rights reserved.

BWR fuel design options for self-sustainable Th-233U fuel cycle

In this work, we investigate a number of fuel assembly design options for a BWR core operating in a closed self-sustainable Th-233U fuel cycle. The designs rely on axially heterogeneous fuel assembly structure in order to improve fertile to fissile conversion ratio. One of the main assumptions of the current study was to restrict the fuel assembly geometry to a single axial fissile zone "sandwiched" between two fertile blanket zones. The main objective was to study the effect of the most important design parameters, such as dimensions of fissile and fertile zones and average void fraction, on the net breeding of 233U. The main design challenge in this respect is that the fuel breeding potential is at odds with axial power peaking and therefore limits the maximum achievable core power rating. The calculations were performed with BGCore system, which consists of MCNP code coupled with fuel depletion and thermo-hydraulic feedback modules. A single 3-dimensional fuel assembly with reflective radial boundaries was modeled applying simplified restrictions on maximum central line fuel temperature and Critical Power Ratio. It was found that axially heterogeneous fuel assembly design with single fissile zone can potentially achieve net breeding. In this case however, the achievable core power density is roughly one third of the reference BWR core.