qPCR counts of mRNA for hepatic reference gene selection in juvenile female Atlantic salmon from perturbation experiments under artificial temperature conditions

The dataset contains raw data (quantification cycle) for a study which determined the most suitable hepatic reference genes for normalisation of qPCR data orginating from juvenile Atlantic salmon (14 days) exposed to 14 and 22 degrees C. These results will be useful for anyone wanting to study the effects of climate change/elevated temperature on reproductive physiology of fish (and perhaphs other vertebrates).

Quaternary radiolarian counts from Site 181-1123

In the present work Quaternary radiolarian assemblages from the Southwest Pacific were investigated due to their importance for correlation and identification of climatic changes. The studied Ocean Drilling Program (ODP) Site 1123 (Leg 181) is situated on the northern flanks of the Chatham Rise, 1100 kilometres offshore eastern New Zealand and in a water depth o f 3290 metres. It is situated just north of the Subtropical Convergence (STC) in temperate climatic conditions, influenced by the cold deep Deep Western Boundary Current (DWBC) and by the subtropical East Cape Current (ECC) in shallow water depths. A continuous record of 79 sediment samples from this site with a temporal resolution of ~15,000 years provided a medium-resolution record of radiolarian assemblages through the Quaternary. This allowed investigations on how radiolarian assemblages are influenced by climatic variations at obliquity and eccentricity bandwidth, with periodic variations of 40,000, 100,000 and 400,000 years, respectively. Emphasis was given to changes in radiolarian assemblages through the Mid-Pleistocene climate transition (MPT) that marks a fundamental reorganisation in Earth's climate system by change from 40,000 to 100,000 year cycles. Glacial and interglacial variations in oceanography were investigated. Especially the influence of the DWBC was examined due to its input of deep and cold waters to the Pacific Ocean, which plays an important role in Earth's climate system. 167 radiolarian counting groups were examined concerning variations in radiolarian abundance, preservation, diversity, the relative abundance of orders, families, and selected species in order to detect influences of past climatic variations in the Southwest Pacific. No significant changes in radiolarian assemblages were found in coincidence with the onset of the MPT. Investigations led to the recognition of four characteristic phases within the last 1.2 million years. Within one of these phases (Phase Ill), about 160,000 years after the onset of the MPT, fundamental changes in radiolarian assemblages occurred. Investigations yielded highest diversity and highest numbers of nassellarians in abundant samples, whereas sparse samples were mostly poorly preserved and were dominated by spumellarians. Abundance of certain radiolarian families in interglacials or glacials indicated their usefulness as indicators for climatic conditions at Site 1123. Trends o f selected taxa within these families supported the significance of warm- or cool-water preference of these families. Use of 67 radiolarian species as climate indicators showed abundance of warm-water assemblages within interglacials, whereas abundance of cool-water species was increased within glacials. Depth distributional patterns of 52 radiolarian species indicated a strong influence of shallow waters, possibly the EEC, within interglacials and increased influence of deep and intermediate waters, possibly of southern-sourced character and the DWBC in glacial stages.

Biological traits, and egg and fecal pellet production of Calanus finmarchicus and Calanus glacialis in situ and during experiments

The effects of temperature and food was examined for Calanus finmarchicus and C. glacialis during 3 phases of the phytoplankton spring bloom in Disko Bay, western Greenland. The 2 species were collected during pre-bloom, bloom, and post-bloom and exposed to temperatures from 0 to 10°C, combined with deficient or excess food. Fecal pellet and egg production were measured as indices for grazing and secondary production, respectively. Furthermore, changes in body carbon, nitrogen, and lipid content were measured. C. glacialis sampled before the bloom and incubated with excess food exhibited high specific egg production at temperatures between 0 and 2.5°C. Higher temperatures did not increase egg production considerably, whereas egg production for C. finmarchicus more than tripled between 2.5 and 5°C. Starved C. glacialis produced eggs at all temperatures stimulated by increasing temperatures, whereas starved C. finmarchicus needed temperatures above 5°C to produce eggs fueled by their lipid stores. Few C. finmarchicus had mature gonads at the initiation of the pre-bloom and bloom experiment, and egg production of C. finmarchicus therefore only increased as the ratio of individuals with mature gonads increased. During the bloom, both C. glacialis and C. finmarchicus used the high food availability for egg production, while refueling or exhausting their lipid stores, respectively. Finally, during the post-bloom experiment, production was low by C. finmarchicus, whereas C. glacialis had terminated production. Our results suggest that a future warmer ocean will reduce the advantage of early spawning by C. glacialis and that C. finmarchicus will become increasingly prevalent.

Palynology and dinoflagellate counts of surface sediments, and sea surface conditions, of sites in the North Pacific

Palynological analyses were performed on 53 surface sediment samples from the North Pacific Ocean, including the Bering and Okhotsk Seas (37-64°N, 144°E-148°W), in order to document the relationships between the dinocyst distribution and sea-surface conditions (temperatures, salinities, primary productivity and sea-ice cover). Samples are characterized by concentrations ranging from 18 to 143816 cysts/cm**3 and the occurrence of 32 species. A canonical correspondence analysis (CCA) was carried out to determine the relationship between environmental variables and the distribution of dinocyst taxa. The first and second axes represent, respectively, 47% and 17.8% of the canonical variance. Axis 1 is positively correlated with all parameters except to the sea-ice and primary productivity in August, which are on the negative side. Results indicate that the composition of dinocyst assemblages is mostly controlled by temperature and that all environmental variables are correlated together. The CCA distinguishes 3 groups of dinocysts: the heterotrophic taxa, the genera Impagidinium and Spiniferites as well as the cyst of Pentapharsodinium dalei and Operculodinium centrocarpum. Five assemblage zones can be distinguished: 1) the Okhotsk Sea zone, which is associated to temperate and eutrophic conditions, seasonal upwellings and Amur River discharges. It is characterized by the dominance of O. centrocarpum, Brigantedinium spp. and Islandinium minutum; 2) the Western Subarctic Gyre zone with subpolar and mesotrophic conditions due to the Kamchatka Current and Alaska Stream inflows. Assemblages are dominated by Nematosphaeropsis labyrinthus, Pyxidinopsis reticulata and Brigantedinium spp.; 3) the Bering Sea zone, depicting a subpolar environment, influenced by seasonal upwellings and inputs from the Anadyr and Yukon Rivers. It is characterized by the dominance of I. minutum and Brigantedinium spp.; 4) the Alaska Gyre zone with temperate conditions and nutrient-enriched surface waters, which is dominated by N. labyrinthus and Brigantedinium spp. and 5) the Kuroshio Extension-North Pacific-Subarctic Current zone characterized by a subtropical and oligotrophic environment, which is dominated by O. centrocarpum, N. labyrinthus and warm taxa of the genus Impagidinium. Transfer functions were tested using the modern analog technique (MAT) on the North Pacific Ocean (= 359 sites) and the entire Northern Hemisphere databases ( = 1419 sites). Results confirm that the updated Northern Hemisphere database is suitable for further paleoenvironmental reconstructions, and the best results are obtained for temperatures with an accuracy of +/-1.7 °C.