Infection of monkeys by simian-human immunodeficiency viruses with transmitted/founder clade C HIV-1 envelopes.

Simian-human immunodeficiency viruses (SHIVs) that mirror natural transmitted/founder (T/F) viruses in man are needed for evaluation of HIV-1 vaccine candidates in nonhuman primates. Currently available SHIVs contain HIV-1 env genes from chronically-infected individuals and do not reflect the characteristics of biologically relevant HIV-1 strains that mediate human transmission. We chose to develop clade C SHIVs, as clade C is the major infecting subtype of HIV-1 in the world. We constructed 10 clade C SHIVs expressing Env proteins from T/F viruses. Three of these ten clade C SHIVs (SHIV KB9 C3, SHIV KB9 C4 and SHIV KB9 C5) replicated in naïve rhesus monkeys. These three SHIVs are mucosally transmissible and are neutralized by sCD4 and several HIV-1 broadly neutralizing antibodies. However, like natural T/F viruses, they exhibit low Env reactivity and a Tier 2 neutralization sensitivity. Of note, none of the clade C T/F SHIVs elicited detectable autologous neutralizing antibodies in the infected monkeys, even though antibodies that neutralized a heterologous Tier 1 HIV-1 were generated. Challenge with these three new clade C SHIVs will provide biologically relevant tests for vaccine protection in rhesus macaques.

The accuracy and completeness for receipt of colorectal cancer care using Veterans Health Administration administrative data.

BACKGROUND: The National Comprehensive Cancer Network and the American Society of Clinical Oncology have established guidelines for the treatment and surveillance of colorectal cancer (CRC), respectively. Considering these guidelines, an accurate and efficient method is needed to measure receipt of care. METHODS: The accuracy and completeness of Veterans Health Administration (VA) administrative data were assessed by comparing them with data manually abstracted during the Colorectal Cancer Care Collaborative (C4) quality improvement initiative for 618 patients with stage I-III CRC. RESULTS: The VA administrative data contained gender, marital, and birth information for all patients but race information was missing for 62.1% of patients. The percent agreement for demographic variables ranged from 98.1-100%. The kappa statistic for receipt of treatments ranged from 0.21 to 0.60 and there was a 96.9% agreement for the date of surgical resection. The percentage of post-diagnosis surveillance events in C4 also in VA administrative data were 76.0% for colonoscopy, 84.6% for physician visit, and 26.3% for carcinoembryonic antigen (CEA) test. CONCLUSIONS: VA administrative data are accurate and complete for non-race demographic variables, receipt of CRC treatment, colonoscopy, and physician visits; but alternative data sources may be necessary to capture patient race and receipt of CEA tests.

Estimación satelital de la productividad primaria neta aérea de la vegetación herbácea del Caldenal

En la Región del Caldenal es necesario generar cambios en la implementación de prácticas de manejo de la ganadería, desarrollar una actividad sustentable y, a su vez, evitar el mayor deterioro del ecosistema y sus servicios. Dichos cambios deberían incluir el uso racional del la vegetación herbácea, combinado con pasturas C4, actividad que en los últimos años se expandió en la región. Para lograr la complementariedad de dichos recursos y poder estructurar estrategias de manejo, debe conocerse su funcionamiento, estacionalidad y productividad. La información satelital provee la ventaja de otorgar gran cantidad y calidad de datos, en distintas escalas espaciales y temporales. El presente trabajo explora algunas posibilidades para la aplicación de dichas herramientas en la Región del Caldenal. La finalidad es proponer estrategias para conocer en forma sencilla la productividad primaria neta aérea del sistema, como determinante de la receptividad animal y el funcionamiento del ecosistema. Se utilizaron imágenes correspondientes a 60 potreros, distribuidos en seis localidades de la Región del Caldenal, Provincia de La Pampa, con bosque de caldén ("fachinal"), sabanas ("Caldenal"), pasturas de Eragrostis curvula y de Panicum coloratum. Con dichas imágenes se evaluó la variabilidad del Índice de Vegetación Normalizado (IVN) en el tiempo, relacionándolo con el funcionamiento ecosistémico (Capítulo 2), se propuso una metodología para discriminar el IVN de la vegetación herbácea y leñosa en los potreros de sabana (Capítulo 3) y se estimó la Productividad Primaria Neta Aérea de los distintos recursos, realizando comparaciones de estacionalidad y producción, y correlaciones con variables ambientales (Capítulo 4). El presente trabajo demuestra las potencialidades de uso de herramientas satelitales para estimar diferentes atributos de los recursos naturales y cultivados del Caldenal. El ajuste de dichas técnicas en la región resulta clave para el diseño de estrategias de manejo ganadero sustentables y conservación de los recursos.

Efectos de la relación entre hongos micorrícicos arbusculares y gramíneas forrajeras bajo defoliación y distinto suministro de fósforo

La asociación entre raíces de plantas y hongos micorrícicos arbusculares (HMA) incrementa la absorción de fósforo. Sin embargo, la defoliación puede influenciar el balance de la simbiosis y la recuperación de las plantas. El objetivo de esta tesis fue estudiar el efecto de la simbiosis micorrícica y el suministro de fósforo, sobre el crecimiento y la recuperación post-defoliación de gramíneas forrajeras cultivadas. Para esto, en primer lugar, se caracterizó la respuesta micorrícica de seis especies de gramíneas (tres templadas (C3) : i) Dactylis glomerata, ii) Elymus elongatus y iii) Schedonorus arundinaceus; y tres tropicales (C4) : iv) Paspalum dilatatum, v) Panicum coloratum y vi) Urochloa brizantha) creciendo en déficit nutricional. En estas condiciones, las gramíneas tropicales presentaron mayor respuesta micorrícica que las templadas. En segundo lugar, se estudió el rol de las micorrizas y el suministro de fósforo sobre el crecimiento y la nutrición de E. elongatus y U. brizantha, dos especies con respuestas micorrícicas contrastantes. Al aumentar el suministro de fósforo, en E. elongatus (especie con menor respuesta micorrícic) ) y U. brizantha (especie con mayor respuesta micorrícica) el cambio en la producción de biomasa, entre plantas inoculadas y no-inoculadas, disminuyó. Sin embargo, mostraron diferencias en la eficiencia en el uso del fósforo: U. brizantha hizo un mayor aprovechamiento del fósforo que E. elongatus. Por último, se caracterizaron respuestas de recuperación post-defoliación bajo distinto suministro de fósforo. En E. elongatus en alto fósforo, hubo un efecto parasítico de la micorriza sobre la recuperación post-defoliación. Por el contrario, en U. brizantha no se detectó un compromiso entre defoliación y micorrizas. La información generada en esta tesis servirá de base para mejorar el conocimiento de aspectos básicos de la relación entre hongos micorrícicos arbusculares y gramíneas forrajeras, como también, para establecer pautas de conservación de las relaciones simbióticas en sistemas pastoriles.

Modificaciones en la vegetación y el suelo inducidos por el manejo del pastoreo en la estepa de halófitas de la pampa deprimida

La actividad agrícola impuso cambios en el uso de la tierra que condujo a un incremento en la concentración de animales en los ambientes marginales de la Pampa Deprimida entre los que se destaca la estepa de halófitas. En ese marco resulta primordial entender mejor los efectos del pastoreo sobre estos ambientes frágiles y pocos estudiados, para proponer herramientas de manejo en situaciones muy deterioradas por el pastoreo continuo. Esta tesis avanzó en el conocimiento de los cambios en la estructura de la vegetación y en las propiedades físicas y químicas del suelo de la estepa de halófitas como resultado de cambiar el manejo de pastoreo continuo por pastoreo rotativo o exclusión por varios años. La implementación del pastoreo rotativo o la exclusión aumentaron la riqueza y la diversidad florística, la cobertura total de broza y la de los grupos funcionales de gramíneas C3 anuales, C4 perennes, monocotiledoneas y leguminosas, y produjeron un contundente cambio en la composición florística. Los cambios florísticos dieron lugar a un aumento importante del valor forrajero de la comunidad vegetal. La metodología de pastoreo propuesta aumentó el contenido de materia orgánica y causaron descensos significativos en la salinidad y el pH, con respecto a las áreas bajo pastoreo continuo. En consonancia con ello, se produjeron mejoras en las propiedades físicas del suelo, como la disminución de la inestabilidad estructural y de la densidad aparente. Los resultados sugieren que la restauración de la estepa de halófitas es factible cuando se implementa el pastoreo rotativo o la exclusión después de ser pastoreadas continuamente.

Comportamiento de varias cepas de Azospirillum sobre trigo (Triticum aestivum) y sorgo (Sorghum vulgare)

p.39-45

Zooplankton Of The Bristol Channel And Severn Estuary - The Distribution Of 4 Copepods In Relation To Salinity

The seasonal variations in distribution and abundance of the common zooplankton species in the Bristol Channel and Severn Estuary were related to the salinity regimes observed over the period November 1973 to February 1975. The dominant constituents in all regions were the calanoid copepods, which reached maximum densities in July: approximately 100 times their winter levels. Four zooplankton assemblages were recognised using an objective classification program which computed similarity coefficients and used group-average sorting. The assemblages existed along the salinity gradient observed from the Severn Estuary to the Celtic Sea. The assemblages were classified as true estuarine, estuarine and marine, euryhaline marine and stenohaline marine and were characterized by the copepods Eurytemora affinis (Poppe) (<30‰S), Acartia bifilosa var. inermis (rose) (27 to 33.5‰S), Centropages hamatus (Lilljeborg) (31 to 35‰S) and Calanus helgolandicus (Claus) (>33‰S), respectively.

Ecological Relations Between the Herring and the Plankton off The North-East Coast of England

I. 430 plankton samples, which were taken by several herring drifters using the Continuous Plankton Recorder in the Shields fishing area during the summer seasons of 1931 to 1933, are analysed to show the main changes in the plankton during those seasons. 2. A comparison is made between the proportions of the different zooplankton organisms found in the plankton and the proportions of these recorded by Savage (1937) in the stomachs of herring obtained from drifters working in the same area and during the same time. The comparisons are made for 29 ten-day periods in the seasons 1931 to 1933, and in addition, for 6 ten-day periods relating to a single drifter which obtained both plankton and stomach samples at the same time in 1932. 3. The comparisons in 2 provide evidence that the herring feeds by selecting certain organisms by individual acts of capture and not by swimming open-mouthed to strain out the plankton indiscriminately: (a) Calanus and Temora in the stomachs either correspond fairly closely to the proportions in the plankton or they may be in very much higher proportions. The latter is always true regarding Anomalocera. (b) Acartia, Oithona, Cladocera and Lamellibranch larvae are always in larger proportions in the plankton than in the stomachs; this applies also to Centropages with two insignificant exceptions. (c) There is a close correspondence between the numbers of Limacina and Sagitta in the plankton and stomachs in the latter half of the 1931 season, but not during 1932 and 1933, when the numbers in the stomachs were insignificant ; during the former period there was a great scarcity of Calanus in the plankton.

A simple method for the preparation of 3-hydroxyiminodehydroquinate, a potent inhibitor of type II dehydroquinase

A number of routes to hydroxyiminodehydroquinate, one of the most potent inhibitors of type II dehydroquinase that is currently known, have been investigated. Methods based on the existing literature synthesis, i.e. oxime formation of a suitably C-4 and C-5 protected methyl 3-dehydroquinate derivative were initially studied. Benzoyl protection did give the desired product but in low overall yield. An alternative BBA protection strategy starting with a protected dehydroquinate was successful in generating a C4/C5 analogue of the desired oxime in high yield. Further investigation revealed that it was unecessary to protect the dehydroquinate precursor, hence the potassium salt corresponding to the desired oxime was simply synthesised as a single isomer from methyl dehydroquinate.

Cataract surgery induces retinal pro-inflammatory gene expression and protein secretion

To investigate the effect(s) of cataract surgery on the expression of pro-inflammatory genes and proteins in the retina using an experimental rodent model. An extracapsular lens extraction was performed in one eye of C57BL/6 mice (n=24); the contralateral unoperated eyes (n =24) as well as eyes from unoperated animals (n = 9) served as controls. The neurosensory retina and retinal pigment epithelium (RPE)/choroid were collected postoperatively. Expression of genes involved in the acute inflammatory/ injury response, including IL-1ß, fibroblast growth factor, transforming growth factor ß, chemokine CCL2, SDF-1, and complements C3, C4, and factor B (CFB), were examined by real-time PCR and, selectively, by immunohistochemistry. The expression of IL-1 ß and CCL2 genes was markedly upregulated (>0-fold, P >0.01) in the neurosensory retina 30 minutes postoperatively and maintained for the 2-week postoperative period of observation; IL-1 ß expression was also upregulated in RPE/choroid. The expression of complement C3 (>-fold) and CFB (>0-fold) genes in the neurosensory retina was also significantly upregulated (P

Analysis of HSC activity and compensatory Hox gene expression profile in Hoxb cluster mutant fetal liver cells

Overexpression of Hoxb4 in bone marrow cells promotes expansion of hematopoietic stem cell (HSC) populations in vivo and in vitro, indicating that this homeoprotein can activate the genetic program that determines self-renewal. However, this function cannot be solely attributed to Hoxb4 because Hoxb4(-/-) mice are viable and have an apparently normal HSC number. Quantitative polymerase chain reaction analysis showed that Hoxb4(-/-) c-Kit(+) fetal liver cells expressed moderately higher levels of several Hoxb cluster genes than control cells, raising the possibility that normal HSC activity in Hoxb4(-/-) mice is due to a compensatory up-regulation of other Hoxb genes. In this study, we investigated the competitive repopulation potential of HSCs lacking Hoxb4 alone, or in conjunction with 8 other Hoxb genes. Our results show that Hoxb4(-/-) and Hoxb1-b9(-/-) fetal liver cells retain full competitive repopulation potential and the ability to regenerate all myeloid and lymphoid lineages. Quantitative Hox gene expression profiling in purified c-KIt(+) Hoxb1-bg(-/-) fetal liver cells revealed an interaction between the Hoxa, b, and c clusters with variation in expression levels of Hoxa4, -a11, and -c4. Together, these studies show a complex network of genetic interactions between several Hox genes in primitive hematopoietic cells and demonstrate that HSCs lacking up to 30% of the active Hox genes remain fully competent.

Characterisation of polyacetylenes isolated from carrot (Daucus carota) extracts by negative ion tandem mass spectrometry

The potential use of negative electrospray ionisation mass spectrometry (ESI-MS) in the characterisation of the three polyacetylenes common in carrots (Daucus carota) has been assessed. The MS scans have demonstrated that the polyacetylenes undergo a modest degree of in-source decomposition in the negative ionisation mode while the positive ionisation mode has shown predominantly sodiated ions and no [M+H](+) ions. Tandem mass spectrometric (MS/MS) studies have shown that the polyacetylenes follow two distinct fragmentation pathways: one that involves cleavage of the C3-C4 bond and the other with cleavage of the C7-C8 bond. The cleavage of the C7-C8 bond generated product ions m/z 105.0 for falcarinol, m/z 105/107.0 for falcarindiol, m/z 147.0/149.1 for falcarindiol-3-acetate. In addition to these product ions, the transitions m/z 243.2 -> 187.1 (falcarinol), m/z 259.2 -> 203.1 (falcarindiol), m/z 301.2 -> 255.2/203.1 (falcarindiol-3-acetate), mostly from the C3-C4 bond cleavage, can form the basis of multiple reaction monitoring (MRM)-quantitative methods which are poorly represented in the literature. The 'MS3' experimental data confirmed a less pronounced homolytic cleavage site between the C11-C12 bond in the falcarinol-type polacetylenes. The optimised liquid chromatography (LC)/MS conditions have achieved a baseline chromatographic separation of the three polyacetylenes investigated within 40 min total run-time. Copyright (C) 2011 John Wiley & Sons, Ltd.

Para-inflammation-mediated retinal recruitment of bone marrow-derived myeloid cells following whole-body irradiation is CCL2 dependent

Previous studies have shown that following whole-body irradiation bone marrow (BM)-derived cells can migrate into the central nervous system, including the retina, to give rise to microglia-like cells. The detailed mechanism, however, remains elusive. We show in this study that a single-dose whole-body ?-ray irradiation (8 Gy) induced subclinical damage (i.e., DNA damage) in the neuronal retina, which is accompanied by a low-grade chronic inflammation, para-inflammation, characterized by upregulated expression of chemokines (CCL2, CXCL12, and CX3CL1) and complement components (C4 and CFH), and microglial activation. The upregulation of chemokines CCL2 and CXCL12 and complement C4 lasted for more than 160 days, whereas the expression of CX3CL1 and CFH was upregulated for 2 weeks. Both resident microglia and BM-derived phagocytes displayed mild activation in the neuronal retina following irradiation. When BM cells from CX3CR1gfp/+ mice or CX3CR1gfp/gfp mice were transplanted to wild-type C57BL/6 mice, more than 90% of resident CD11b+ cells were replaced by donor-derived GFP+ cells after 6 months. However, when transplanting CX3CR1gfp/+ BM cells into CCL2-deficient mice, only 20% of retinal CD11b+ cells were replaced by donor-derived cells at 6 month. Our results suggest that the neuronal retina suffers from a chronic stress following whole-body irradiation, and a para-inflammatory response is initiated, presumably to rectify the insults and maintain homeostasis. The recruitment of BM-derived myeloid cells is a part of the para-inflammatory response and is CCL2 but not CX3CL1 dependent. © 2012 Wiley Periodicals, Inc.