A novel application of gene arrays: Escherichia coli array provides insight into the biology of the obligate endosymbiont of tsetse flies

Symbiotic associations with microorganisms are pivotal in many insects. Yet, the functional roles of obligate symbionts have been difficult to study because it has not been possible to cultivate these organisms in vitro. The medically important tsetse fly (Diptera: Glossinidae) relies on its obligate endosymbiont, Wigglesworthia glossinidia, a member of the Enterobacteriaceae, closely related to Escherichia coli, for fertility and possibly nutrition. We show here that the intracellular Wigglesworthia has a reduced genome size smaller than 770 kb. In an attempt to understand the composition of its genome, we used the gene arrays developed for E. coli. We were able to identify 650 orthologous genes in Wigglesworthia corresponding to ≈85% of its genome. The arrays were also applied for expression analysis using Wigglesworthia cDNA and 61 gene products were detected, presumably coding for some of its most abundant products. Overall, genes involved in cell processes, DNA replication, transcription, and translation were found largely retained in the small genome of Wigglesworthia. In addition, genes coding for transport proteins, chaperones, biosynthesis of cofactors, and some amino acids were found to comprise a significant portion, suggesting an important role for these proteins in its symbiotic life. Based on its expression profile, we predict that Wigglesworthia may be a facultative anaerobic organism that utilizes ammonia as its major source of nitrogen. We present an application of E. coli gene arrays to obtain broad genome information for a closely related organism in the absence of complete genome sequence data.

Evidence from disruption of the lmcpb gene array of Leishmania mexicana that cysteine proteinases are virulence factors.

The mammalian form of the protozoan parasite Leishmania mexicana contains high activity of a cysteine proteinase (LmCPb) encoded on a tandem array of 19 genes (lmcpb). Homozygous null mutants for lmcpb have been produced by targeted gene disruption. All life-cycle stages of the mutant can be cultured in vitro, demonstrating that the gene is not essential for growth or differentiation of the parasite. However, the mutant exhibits a marked phenotype affecting virulence-- its infectivity to macrophages is reduced by 80%. The mutants are as efficient as wild-type parasites in invading macrophages but they only survive in a small proportion of the cells. However, those parasites that successfully infect these macrophages grow normally. Despite their reduced virulence, the mutants are still able to produce subcutaneous lesions in mice, albeit at a slower rate than wild-type parasites. The product of a single copy of lmcpb re-expressed in the null mutant was enzymatically active and restored infectivity toward macrophages to wild-type levels. Double null mutants created for lmcpb and lmcpa (another cathepsin L-like cysteine proteinase) have a similar phenotype to the lmcpb null mutant, showing that LmCPa does not compensate for the loss of LmCPb.

Role of essential light chain EF hand domains in calcium binding and regulation of scallop myosin.

The specific Ca2+ binding site that triggers contraction of molluscan muscle requires the presence of an essential light chain (ELC) from a Ca2+ binding myosin. Of the four EF hand-like domains in molluscan ELCs, only domain III has an amino acid sequence predicted to be capable of binding Ca2+. In this report, we have used mutant ELCs to locate the Ca2+ binding site in scallop myosin and to probe the role of the ELC in regulation. Point mutations in domain III of scallop ELC have no effect on Ca2+ binding. Interestingly, scallop and rat cardiac ELC chimeras support Ca2+ binding only if domain I is scallop. These results are nevertheless in agreement with structural studies on a proteolytic fragment of scallop myosin, the regulatory domain. Furthermore, Ca2+ sensitivity of the scallop myosin ATPase requires scallop ELC domain I: ELCs containing cardiac domain I convert scallop myosin to an unregulated molecule whose activity is no longer repressed in the absence of Ca2+. Despite its unusual EF hand domain sequence, our data indicate that the unique and required contribution of molluscan ELCs to Ca2+ binding and regulation of molluscan myosins resides exclusively in domain I.

Determinação de vitaminas antioxidantes em suplementos e avaliação da rotulagem nutricional

Introdução: Diante das mudanças nos hábitos de consumo alimentar da população brasileira, suplementos vitamínicos e alimentos enriquecidos são veículos comumente empregados para atender as necessidades de ingestão de micronutrientes. A diversidade de suplementos vitamínicos comercializados atualmente leva à necessidade de desenvolvimento de métodos analíticos de fácil execução e alta produtividade. Informações confiáveis sobre os teores de vitaminas poderão ser obtidas somente com métodos analíticos validados. Objetivos: Validar metodologias analíticas e avaliar o teor de vitaminas antioxidantes em suplementos adquiridos no comércio do município de São Paulo - Brasil, o efeito do armazenamento nestes compostos e confrontar os valores analisados com os valores declarados na rotulagem. Métodos: As metodologias analíticas para determinação de vitaminas antioxidantes por cromatografia líquida de alta eficiência com detector de arranjo de diodos (CLAE-DAD) e de vitamina C por titulação potenciométrica foram validadas para as matrizes sólidas, oleosas e líquidas de suplementos vitamínicos. A estabilidade das vitaminas foi avaliada a cada 6 meses durante 12 meses de armazenamento e a avaliação da rotulagem foi realizada de acordo com as legislações vigentes no Brasil. Resultados: Para os métodos cromatográficos, os limites de detecção (LDs) e de quantificação (LQs) variaram entre 0,3 e 4,3 µg/mL, e entre 0,5 e 14,0 µg/mL respectivamente. As recuperações dos padrões adicionados nas matrizes variaram entre 92 por cento e 109 por cento e entre 86 por cento e 108 por cento no material de referência. A repetitividade foi calculada pelo desvio padrão relativo (RSD), apresentando valores entre 0,2 por cento e 9,6 por cento . Para a determinação de vitamina C pelo método potenciométrico, o LD e o LQ foram respectivamente 1 mg e 3 mg; a recuperação no material de referência foi de 99,8 por cento e a precisão variou entre 0,4 e 3,9 por cento . Das 57 amostras avaliadas, 59 por cento e 35 por cento apresentaram teores de vitaminas A e E respectivamente, abaixo dos valores declarados no rótulo; por outro lado, 20 por cento das amostras apresentaram teores de vitamina E acima dos valores declarados. Em relação aos teores de vitamina C, 60 por cento das amostras estavam de acordo com os valores declarados. O estudo da estabilidade demonstrou degradação significativa das vitaminas A, E e C em aproximadamente 90 por cento das amostras com 12 meses de armazenamento. Na avaliação da rotulagem dos suplementos vitamínicos, 47 das amostras apresentaram uma ou mais irregularidades. Conclusão: Os métodos propostos se mostraram adequados para análise de diferentes matrizes de suplementos vitamínicos. Os resultados das análises de vitaminas nestes produtos mostraram a necessidade urgente de monitoramento em conjunto com ações de fiscalização, pois verificou-se que a maioria das amostras não atenderam a legislação, principalmente quanto aos teores declarados na informação nutricional da rotulagem. A sobredosagem de vitaminas pode ser necessária para manter os teores declarados durante o armazenamento, porém, a quantidade adicional de vitamina a ser incluída no suplemento deve estar dentro de limites seguros e depende de cada amostra, pois além da matriz, diversos fatores relacionados aos compostos e à embalagem também podem influenciar na estabilidade das vitaminas.

Phase diagram of a polydisperse soft-spheres model for liquids and colloids

The phase diagram of soft spheres with size dispersion is studied by means of an optimized Monte Carlo algorithm which allows us to equilibrate below the kinetic glass transition for all size distributions. The system ubiquitously undergoes a first-order freezing transition. While for a small size dispersion the frozen phase has a crystalline structure, large density inhomogeneities appear in the highly disperse systems. Studying the interplay between the equilibrium phase diagram and the kinetic glass transition, we argue that the experimentally found terminal polydispersity of colloids is a purely kinetic phenomenon.

The Impact of Sexual Boundary Violations in Supervision and Therapy: A Qualitative Study of a Trainee's First-Hand Account

This study involves a qualitative analysis of a doctoral-level psychology trainee's first-hand account of sexual attraction and boundary violations that occurred in her clinical supervision and psychotherapy. Concepts of power, gender, social performance theory, and relational framing are applied to two case examples, illustrating the differing demands on a trainee when her relationships were sexualized in two distinct professional contexts. Ramifications of supervisory exploitation and the impact of such an experience on a trainee's professional development are discussed. Recommendations are provided for improving psychology training programs' prevention and response efforts.

Hand gesture recognition based on morphologic features

Comunicación presentada en el IX Simposium Nacional de Reconocimiento de Formas y Análisis de Imágenes, Benicàssim, Mayo, 2001.

Optimizing the number of stations in arrays measurements: experimental outcomes for different array geometries and the f-k method

Array measurements have become a valuable tool for site response characterization in a non-invasive way. The array design, i.e. size, geometry and number of stations, has a great influence in the quality of the obtained results. From the previous parameters, the number of available stations uses to be the main limitation for the field experiments, because of the economical and logistical constraints that it involves. Sometimes, from the initially planned array layout, carefully designed before the fieldwork campaign, one or more stations do not work properly, modifying the prearranged geometry. Whereas other times, there is not possible to set up the desired array layout, because of the lack of stations. Therefore, for a planned array layout, the number of operative stations and their arrangement in the array become a crucial point in the acquisition stage and subsequently in the dispersion curve estimation. In this paper we carry out an experimental work to analyze which is the minimum number of stations that would provide reliable dispersion curves for three prearranged array configurations (triangular, circular with central station and polygonal geometries). For the optimization study, we analyze together the theoretical array responses and the experimental dispersion curves obtained through the f-k method. In the case of the f-k method, we compare the dispersion curves obtained for the original or prearranged arrays with the ones obtained for the modified arrays, i.e. the dispersion curves obtained when a certain number of stations n is removed, each time, from the original layout of X geophones. The comparison is evaluated by means of a misfit function, which helps us to determine how constrained are the studied geometries by stations removing and which station or combination of stations affect more to the array capability when they are not available. All this information might be crucial to improve future array designs, determining when it is possible to optimize the number of arranged stations without losing the reliability of the obtained results.

3D visual sensing of human hand for remote operation of a robotic hand

New low cost sensors and open free libraries for 3D image processing are making important advances in robot vision applications possible, such as three-dimensional object recognition, semantic mapping, navigation and localization of robots, human detection and/or gesture recognition for human-machine interaction. In this paper, a novel method for recognizing and tracking the fingers of a human hand is presented. This method is based on point clouds from range images captured by a RGBD sensor. It works in real time and it does not require visual marks, camera calibration or previous knowledge of the environment. Moreover, it works successfully even when multiple objects appear in the scene or when the ambient light is changed. Furthermore, this method was designed to develop a human interface to control domestic or industrial devices, remotely. In this paper, the method was tested by operating a robotic hand. Firstly, the human hand was recognized and the fingers were detected. Secondly, the movement of the fingers was analysed and mapped to be imitated by a robotic hand.

3D Hand Pose Estimation with Neural Networks

We propose the design of a real-time system to recognize and interprethand gestures. The acquisition devices are low cost 3D sensors. 3D hand pose will be segmented, characterized and track using growing neural gas (GNG) structure. The capacity of the system to obtain information with a high degree of freedom allows the encoding of many gestures and a very accurate motion capture. The use of hand pose models combined with motion information provide with GNG permits to deal with the problem of the hand motion representation. A natural interface applied to a virtual mirrorwriting system and to a system to estimate hand pose will be designed to demonstrate the validity of the system.

RGBD Human-Hand recognition for the Interaction with Robot-Hand

New low cost sensors and the new open free libraries for 3D image processing are permitting to achieve important advances for robot vision applications such as tridimensional object recognition, semantic mapping, navigation and localization of robots, human detection and/or gesture recognition for human-machine interaction. In this paper, a method to recognize the human hand and to track the fingers is proposed. This new method is based on point clouds from range images, RGBD. It does not require visual marks, camera calibration, environment knowledge and complex expensive acquisition systems. Furthermore, this method has been implemented to create a human interface in order to move a robot hand. The human hand is recognized and the movement of the fingers is analyzed. Afterwards, it is imitated from a Barret hand, using communication events programmed from ROS.

Stability in Linear Optimization Under Perturbations of the Left-Hand Side Coefficients

This paper studies stability properties of linear optimization problems with finitely many variables and an arbitrary number of constraints, when only left hand side coefficients can be perturbed. The coefficients of the constraints are assumed to be continuous functions with respect to an index which ranges on certain compact Hausdorff topological space, and these properties are preserved by the admissible perturbations. More in detail, the paper analyzes the continuity properties of the feasible set, the optimal set and the optimal value, as well as the preservation of desirable properties (boundedness, uniqueness) of the feasible and of the optimal sets, under sufficiently small perturbations.

Narraciones espaciales desde el cuerpo. Una aproximación arquitectónica a las relaciones de sumisión, violencia y armonía

Este trabajo de investigación pretende poner en valor una comprensión del espacio desde la vinculación existente entre el cuerpo y el complejo e inestable ambiente que habita. Por un lado, el cuerpo, con sus relaciones, acciones y afectos, se erige como la herramienta clave para entender las dinámicas de producción espacial contemporánea, por otro, la inclusión de la escala humana, hace que los grandes relatos se desvanezcan en favor de una serie de vínculos sensibles que re-humanizan la arquitectura y atienden a las sensaciones del individuo. Así, se pone de manifiesto una narración que sitúa al cuerpo como protagonista y en la que su vinculación con la espacialidad fluctúa entre la sumisión, la violencia y la armonía para con los otros cuerpos y el espacio. Como caso de estudio, se ha tomado la más abyecta y violenta de las construcciones: el campo de concentración de Auschwitz, en un intento de re-pensarlo desde los afectos del individuo y de problematizar las relaciones y acciones contemporáneas –que de acuerdo con el filósofo Michael Foucault- derivan hacia derroteros de control y violencias invisibles. Dicha tarea se nutre de una multiplicidad de cartografías como instrumento de conocimiento para visibilizar narraciones arquitectónicas a través del cuerpo, con el objetivo tanto del análisis de situaciones acontecidas, como de operar sobre nuevas oportunidades espaciales.