Antibiotic Susceptibility and Sequence Type Distribution of Ureaplasma Species Isolated from Genital Samples in Switzerland.

Antibiotic resistance in Ureaplasma urealyticum/Ureaplasma parvum and Mycoplasma hominis is an issue of increasing importance. However, data regarding the susceptibility and, more importantly, the clonality of these organisms are limited. We analyzed 140 genital samples obtained in Bern, Switzerland, in 2014. Identification and antimicrobial susceptibility tests were performed by using the Mycoplasma IST 2 kit and sequencing of 16S rRNA genes. MICs for ciprofloxacin and azithromycin were obtained in broth microdilution assays. Clonality was analyzed with PCR-based subtyping and multilocus sequence typing (MLST), whereas quinolone resistance and macrolide resistance were studied by sequencing gyrA, gyrB, parC, and parE genes, as well as 23S rRNA genes and genes encoding L4/L22 ribosomal proteins. A total of 103 samples were confirmed as positive for U. urealyticum/U. parvum, whereas 21 were positive for both U. urealyticum/U. parvum and M. hominis. According to the IST 2 kit, the rates of nonsusceptibility were highest for ciprofloxacin (19.4%) and ofloxacin (9.7%), whereas low rates were observed for clarithromycin (4.9%), erythromycin (1.9%), and azithromycin (1%). However, inconsistent results between microdilution and IST 2 kit assays were recorded. Various sequence types (STs) observed previously in China (ST1, ST2, ST4, ST9, ST22, and ST47), as well as eight novel lineages, were detected. Only some quinolone-resistant isolates had amino acid substitutions in ParC (Ser83Leu in U. parvum of serovar 6) and ParE (Val417Thr in U. parvum of serovar 1 and the novel Thr417Val substitution in U. urealyticum). Isolates with mutations in 23S rRNA or substitutions in L4/L22 were not detected. This is the first study analyzing the susceptibility of U. urealyticum/U. parvum isolates in Switzerland and the clonality outside China. Resistance rates were low compared to those in other countries. We hypothesize that some hyperepidemic STs spread worldwide via sexual intercourse. Large combined microbiological and clinical studies should address this important issue.

Modelización de la pérdida de suelo en sierras del Sudoeste de la Provincia de Buenos Aires

El modelo U.S.L.E. (Universal Soil Loss Equation), desarrollado por Wischmeier y Smith en 1978, es un modelo paramétrico creado para estimar la pérdida anual de suelo. Engloba, dentro de los cinco factores intervinientes, todas las características de la cuenca, incluyendo tanto aspectos físicos como características edáficas, geológicas y geomorfológicas, sin olvidar las relacionadas con el clima, y el tipo de manejo y uso del suelo. El objetivo del trabajo fue estimar la pérdida de suelo a nivel de la cuenca hidrográfica del Arroyo Belisario, ubicada en el Partido de Tornquist, en el Sudoeste de la Provincia de Buenos Aires. Más de 1.200 ha (aproximadamente 50% de la cuenca), presentaron pérdidas de suelo mayores a las 50 tn.ha-1.año-1. Se observó que los factores K y LS son determinantes de los elevados valores presentes en la cabecera de la cuenca. La elaboración de la cartografía correspondiente a cada factor de la U.S.L.E se realizó con el Sistema de Información Geográfica Idrisi Andes. Se concluye que el modelo fue aplicado de manera correcta en la cuenca del Arroyo Belisario, brindando resultados que facilitarán la toma de decisiones para un futuro ordenamiento territorial.

Advance provision of emergency contraception for pregnancy prevention (Review)

Background Emergency contraception can prevent pregnancy when taken after unprotected intercourse.Obtaining emergency contraception within the recommended time frame is difficult for many women. Advance provision could circumvent some obstacles to timely use. Objectives To summarize randomized controlled trials evaluating advance provision of emergency contraception to explore effects on pregnancy rates, sexually transmitted infections, and sexual and contraceptive behaviors. Search strategy In November 2009, we searched CENTRAL, EMBASE, POPLINE,MEDLINE via PubMed, and a specialized emergency contraception article database. We also searched reference lists and contacted experts to identify additional published or unpublished trials. Selection criteria We included randomized controlled trials comparing advance provision and standard access (i.e., counseling whichmay ormay not have included information about emergency contraception, or provision of emergency contraception on request at a clinic or pharmacy). Data collection and analysis Two reviewers independently abstracted data and assessed study quality. We entered and analyzed data using RevMan 5.0.23. Main results Eleven randomized controlled trials met our criteria for inclusion, representing 7695 patients in the United States, China, India and Sweden. Advance provision did not decrease pregnancy rates (odds ratio (OR) 0.98, 95% confidence interval (CI) 0.76 to 1.25 in studies for which we included twelve-month follow-up data; OR 0.48, 95% CI 0.18 to 1.29 in a study with seven-month follow-up data; OR 0.92, 95% CI 0.70 to 1.20 in studies for which we included six-month follow-up data; OR 0.49, 95% CI 0.09 to 2.74 in a study with three-month follow-up data), despite reported increased use (single use: OR 2.47, 95% CI 1.80 to 3.40; multiple use: OR 4.13, 95% CI 1.77 to 9.63) and faster use (weighted mean difference (WMD) -12.98 hours, 95% CI -16.66 to -9.31 hours). Advance provision did not lead to increased rates of sexually transmitted infections (OR 1.01, 95% CI 0.75 to 1.37), increased frequency of unprotected intercourse, or changes in contraceptive methods.Women who received emergency contraception in advance were equally likely to use condoms as other women. Authors’ conclusions Advance provision of emergency contraception did not reduce pregnancy rates when compared to conventional provision. Results from primary analyses suggest that advance provision does not negatively impact sexual and reproductive health behaviors and outcomes. Women should have easy access to emergency contraception, because it can decrease the chance of pregnancy.However, the interventions tested thus far have not reduced overall pregnancy rates in the populations studied.

Benthic and planktonic foraminifera of sediment core GIK17957-2

A detailed age model for core 17957-2 of the southern South China Sea was developed based on delta18O, coarse fraction, magnetostratigraphy, and biostratigraphy for the last 1500 kyr. The delta18O record has clear ~100-kyr cycles after the Mid-Pleistocene Revolution (MPR) at the entrance of marine isotopic stage (MIS) 22. Planktonic foraminifera responded to the MPR immediately, showing the increased sea surface temperature (SST) and dissolution after the MPR. Benthic foraminifera did not respond to it until the Brunhes/Matuyama boundary. Since the MPR, the depth of thermocline gradually became shallower until MISs 6-5. This major change within MISs 6-5 was also reflected in the decreased SSTs and increased productivity and Deep Water Mass. Thus two major Pleistocene paleoceanographic changes were found: One was around the MPR; the other occurred within MISs 6-5, which speculatively might be ascribed to the reorganization of surface and deep circulation, possibly induced by tectonic forces.

Age determinations and sedimentology on cores GIK17940 and 184-1144

Sedimentological, geochemical and paleomagnetic records were employed to reconstruct the history of East Asian Monsoon variability in the South China Sea (SCS) on orbital- and millennial-to-sub-decadal time scales. A detailed magnetostratigraphy for the southern central SCS was established as well as a stable isotope stratigraphy for ODP Site 1144 for the last 1.2 million years in the northern South China Sea. Furthermore a volcanic tephra layer from the southern central SCS could be identified as the Youngest Toba Ash, which thus re-presents an important age marker and was used to reconstruct paleo wind directions during the eruption 74 ka. Special attention was paid to the high- and ultrahigh-frequency variability in the last glacial-interglacial cycle and the Holocene, and to a precise age control of climate changes in general.

Age models of ODP Site 184-1143

Here we present an improved astronomical timescale since 5 Ma as recorded in the ODP Site 1143 in the southern South China Sea, using a recently published Asian summer monsoon record (hematite to goethite content ratio, Hm/Gt) and a parallel benthic d18O record. Correlation of the benthic d18O record to the stack of 57 globally distributed benthic d18O records (LR04 stack) and the Hm/Gt curve to the 65°N summer insolation curve is a particularly useful approach to obtain refined timescales. Hence, it constitutes the basis for our effort. Our proposed modifications result in a more accurate and robust chronology than the existing astronomical timescale for the ODP Site 1143. This updated timescale further enables a detailed study of the orbital variability of low-latitude Asian summer monsoon throughout the Plio-Pleistocene. Comparison of the Hm/Gt record with the d18O record from the same core reveals that the oscillations of low-latitude Asian summer monsoon over orbital scales differed considerably from the glacial-interglacial climate cycles. The popular view that summer monsoon intensifies during interglacial stages and weakens during glacial stages appears to be too simplistic for low-latitude Asia. In low-latitude Asia, some strong summer monsoon intervals appear to have also occurred during glacial stages in addition to their increased occurrence during interglacial stages. Vice versa, some notably weak summer monsoon intervals have also occurred during interglacial stages next to their anticipated occurrence during glacial stages. The well-known mid-Pleistocene transition (MPT) is only identified in the benthic d18O record but not in the Hm/Gt record from the same core. This suggests that the MPT may be a feature of high- and middle-latitude climates, possibly determined by high-latitude ice sheet dynamics. For low-latitude monsoonal climate, its orbital-scale variations respond more directly to insolation and are little influenced by high-latitude processes, thus the MPT is likely not recorded. In addition, the Hm/Gt record suggests that low-latitude Asian summer monsoon intensity has a long-term decreasing trend since 2.8 Ma with increased oscillation amplitude. This long-term variability is presumably linked to the Northern Hemisphere glaciation since then.

Stable oxygen and carbon isotope record of foraminifera of ODP SIte 184-1146

Ocean Drilling Program Site 1146 was drilled within a small rift basin on the midcontinental slope of the northern South China Sea. It is located at 19°27.4'N, 116°16.37'E, in 2092 m water depth. This site was drilled to recover records of Asian monsoon variability into the middle Miocene with temporal resolution sufficient for orbital-scale analyses. Here we present oxygen and carbon isotopic measurements of planktonic foraminifers (Globigerinoides ruber) and benthic foraminifers (Uvigerina peregrina and Cibicides wuellerstorfi) as well as a preliminary age model for the top 185 meters composite depth (mcd).

Oxygen isotope and Mg/Ca record of planktonic foraminifera of sediment core MD01-2390

Changes in the local freshwater budget over the last 22,000 years have been estimated from a sediment core located in the southern South China Sea (SCS) using a combined approach of Mg/Ca and oxygen isotopes on the planktonic foraminifera Globigerinoides ruber (white) sensu stricto (s.s.). Core MD01-2390 (06°28,12N, 113°24,56E; water depth 1591 m) is located near the glacial paleo-river mouths of the Baram, Rajang and North Sunda/Molengraaff Rivers that drained the exposed Sunda Shelf. The delta18Oseawater record reveals lower average values (-0.96±0.18 per mil) during the Last Glacial Maximum (LGM) when compared with modern values (-0.54±0.18 per mil). Low salinity during the LGM is interpreted to reflect a higher freshwater contribution due to a greater proximity of the core site to the mouths of the Baram, Rajang and North Sunda/Molengraaff Rivers at that time. A general deglacial increasing trend in salinity due to the progressive landward displacement of the coastline during deglacial shelf flooding is punctuated by several short-term shifts towards higher and lower salinity that are likely related to abrupt changes in the intensity of the East Asian summer monsoon. Thus, the deglacial delta18Oseawater changes reflect the combined effects of sea-level-induced environmental changes on the shelf (e.g. phases of retreat and breakdown of the shelf drainage systems) and East Asian monsoon climate change. Lower salinity than at present during the Early Holocene may be attributed to an increase in summer monsoonal precipitation that is corroborated by previous marine and terrestrial studies that report a Preboreal-Early Holocene monsoon optimum in the Asian monsoon region.

Contents and isotopic composition of black carbon from ODP Sites 184-1147 and 184-1148

A 30 m.y. stable isotopic record of marine-deposited black carbon from regional terrestrial biomass burning from the northern South China Sea reveals photosynthetic pathway evolution for terrestrial ecosystems in the late Cenozoic. This record indicates that C3 plants negatively adjusted their isotopic discrimination and C4 plants appeared gradually as a component of land vegetation in East Asia since the early Miocene, a long time before sudden C4 expansion occurred during the late Miocene to the Pliocene. The changes in terrestrial ecosystems with time can be reasonably related to the evolution of East Asian monsoons, which are thought to have been induced by several intricate mechanisms during the late Cenozoic and could contribute significantly to the post-Miocene marine carbonate isotope decline.

High-resolution isotope stratigraphy of ODP Site 184-1144

Narrow-spaced oxygen and carbon stable isotope records of the planktonic foraminifer Globigerinoides ruber (white) were obtained at Ocean Drilling Program Leg 184 Site 1144 to establish a first record of high-resolution Pleistocene monsoon variability on orbital to centennial timescales in the northern South China Sea. The new records extend from the Holocene back to marine isotope Stage (MIS) 34 (1.1 Ma). Sedimentation rates average 0.56 m/k.y. for the upper Matuyama and Brunhes Chrons and increase to 1.8 m/k.y. over the last 100 k.y. Stable isotope records thus reach an average time resolution of 270-500 yr for the last 375 k.y. and 570 yr further back to 700 ka. On the other hand, major stratigraphic gaps were identified for peak warm Stages 5.5, 7.5 (down to 8.4), 11.3, and 15.5. These gaps probably resulted from short-lasting events of contour current erosion induced by short-term enhanced incursions of Upper Pacific Deep Water near the end of glacial terminations. A further major hiatus extends from MIS 34 to MIS 73(?). The long-term variations in monsoon climate were largely dominated by the 100-k.y. eccentricity cycle. Planktonic delta13C values culminated near 30, 480, and 1035 ka and reflect an overlying 450-k.y. eccentricity cycle of minimum nutrient concentrations in the surface ocean. Superimposed on the orbital variations, millennial-scale cycles were prominent throughout the last 700 k.y., mainly controlled by short-term changes in monsoon-driven precipitation and freshwater input from mainland China. During the last 110 k.y. these short-lasting oscillations closely match the record of 1500-yr Dansgaard-Oeschger climate cycles in the Greenland ice core record.

Astronomically modulated Neogene sediment records of ODP Site 184-1148

General global cooling over the Neogene has been modulated by changes in Earth's orbital parameters. Investigations of deep-sea sediment sequences show that various orbital cycles can dominate climate records for different latitudes or for different time intervals. However, a comprehensive understanding of astronomical imprints over the entire Neogene has been elusive because of the general absence of long, continuous records extending beyond the Pliocene. We present benthic foraminiferal d18O and d13C records over the past 23 Ma at Ocean Drilling Program Site 1148 in the northern South China Sea and construct an astronomically tuned timescale (TJ08) for these records based on natural gamma radiation and color reflectance data at this site. Our results show that a 41 ka cycle has dominated sediment records at this location over the Neogene, displaying a linear response to orbital forcing. A 100 ka cycle has also been significant. However, it is correlated nonlinearly with Earth's orbital variations at the 100 ka band. The sediment records also display a prominent 405 ka cycle. Although this cycle was coherent with orbital forcing during the Oligocene and the early Miocene, it was not coherent with Earth's orbital variations at the 405 ka band over the whole Neogene. Amplification of Northern Hemisphere and Southern Hemisphere glaciation since the middle Miocene may be responsible for this change in sedimentary response. Our benthic foraminifera d18O and d13C records further exhibit amplitude variations with longer periods of 600, 1000, 1200, and 2400 ka. Apparently, these cycles are nonlinear responses to insolation forcing.

Chemical and isotopic compositions of authigenic carbonates from bottom sediments of Northwest Pacific marginal seas

The paper presents data on authigenic carbonate distribution in Holocene - Upper Pleistocene deposits of the Okhotsk, Japan, East China, Philippine and South China Seas. Description of carbonate samples, their chemical and isotope compositions are given. Chemical analysis of the samples indicates that almost all authigenic carbonates are composed of calcite or magnesian calcite; and only in one case, of siderite. Oxygen isotopic composition (d18O) ranges from +37.7 to +26.1 per mil (SMOW); it is, probably, connected with different temperatures of carbonate formation. A distinct geographic regularity is traced. Decrease in d18O values is observed from the cold Okhotsk Sea to the warm South China Sea. A very wide range of carbon isotopic composition (d13C from -42 to +3.8 per mil) indicates different sources of carbonic acid required for formation of these carbonates. As a basis for carbon isotopic composition we can distinguish three sources of carbonic acid in the studied sediments: microbiological methane oxidation, organic matter destruction during sediment diagenesis, and dissolved organogenic limestone. Thus, formation of authigenic carbonates in sediments from the marginal seas of the Northwest Pacific results from: 1) sediment diagenesis, 2) methane oxidation in zones of gas anomalies, 3) their precipitation from the supersaturated by carbonates sea shoal waters of tropical sea lagoons.