Automatic segmentation and classification of human intestinal parasites from microscopy images

Human intestinal parasites constitute a problem in most tropical countries, causing death or physical and mental disorders. Their diagnosis usually relies on the visual analysis of microscopy images, with error rates that may range from moderate to high. The problem has been addressed via computational image analysis, but only for a few species and images free of fecal impurities. In routine, fecal impurities are a real challenge for automatic image analysis. We have circumvented this problem by a method that can segment and classify, from bright field microscopy images with fecal impurities, the 15 most common species of protozoan cysts, helminth eggs, and larvae in Brazil. Our approach exploits ellipse matching and image foresting transform for image segmentation, multiple object descriptors and their optimum combination by genetic programming for object representation, and the optimum-path forest classifier for object recognition. The results indicate that our method is a promising approach toward the fully automation of the enteroparasitosis diagnosis. © 2012 IEEE.

Resistance of beef cattle of two genetic groups to ectoparasites and gastrointestinal nematodes in the state of São Paulo, Brazil

The resistance to infestations by ectoparasites and infections by gastrointestinal nematodes was studied in 45 animals (males and females) of two genetic groups: purebred Nelore (NI, n=28) and Three-Cross (1/2 Angus+1/4 Canchim+1/4 Nelore - TC, n=17). The animals were monitored for 24months, during which they were left to graze in tropical pastures without receiving treatment for parasites. Each month the animals were examined for infestations by external parasites, to count the numbers of cattle ticks Rhipicephalus microplus with diameter greater than 4.5mm present on the left side, horn flies (Haematobia irritans) present in the lumbar region and botfly larvae (Dermatobia hominis) present on the entire body. The H. irritans counts were performed with the aid of digital photographs. At the time of examination, fecal samples were collected to count the eggs per gram (EPG) and to perform coprocultures, and peripheral blood samples were drawn to determine the packed cell volume (PCV) and to count the eosinophils. For statistical analysis, the count data were transformed into log10 (n+1), where n is the number of parasites. For PCV, significant effects (P<0.05) were found for collection month (CO), genetic group (GG) and gender (SX), with means and respective standard errors of 41.5±0.65% for the NI animals, 39.3±0.83% for the TC, 41.5±0.72% for the females and 39.3±0.77% for the males. Regarding the eosinophil counts, only the effect of sex was significant (P<0.01), with means and respective standard errors of 926.0±46.2/μL, for males and 1088.0±43.8/μL of blood, for females. The NI animals presented lower mean counts for all the external parasites compared to the TC animals (P<0.01). For ticks, the transformed means followed by standard errors for the NI and TC animals were 0.06±0.01 and 0.34±0.02, while for horn flies these were 0.92±0.05 and 1.36±0.06 and for botfly larvae they were 0.05±0.03 and 0.45±0.05, respectively. The average EPG values were only influenced by CO (P<0.01). The coprocultures revealed the presence of the following endoparasites: Haemonchus spp., Cooperia spp., Oesophagostomum spp. and Trichostrongylus spp., the last in smaller proportion. There were no significant differences between the genetic groups for the endoparasite loads, except for Cooperia spp., which were present in greater number (P<0.05) in the NI group. The results obtained in this experiment confirm previous findings of greater susceptibility of the Nelore breed to Cooperia spp. and high resistance to ectoparasites. © 2013 Elsevier B.V.

Qualidade higiênica e sanitária de tilápias provenientes de cultivo, comercializadas no varejo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Tratamento de efluentes de piscicultura utilizando sistema tipo wetland povoado com espécies de macrófitas aquáticas de três tipos ecológicos diferentes

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Capacidade de retenção e dinâmica de um wetland construído no tratamento de águas residuais

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Mamíferos de médio e grande porte e ecologia alimentar de carnívoros em remanescentes de Floresta Ombrófia Mista e palntios de Pinus spp. na região centro-sul do Estado do Paraná, Brasil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Qualidade microbiológica do ambiente e da tilápia-do-Nilo (Oreochromis niloticus) produzida em sistema de tanques-rede no reservatório de Chavantes, SP

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Resposta imunológica de cordeiros às infecções artificiais por Haemonchus contortus e Haemonchus placei

Pós-graduação em Biologia Geral e Aplicada - IBB

Caracterização da resistência a anti-helmíntico de isolados de Haemonchus contortus e trichostrongylus colubriformis orieundo de ovinos

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Óleo de Neem: tratamento parasitário em ovinos e desenvolvimento ponderal

Pós-graduação em Ciência Animal - FMVA

Avaliação da eficiência de métodos rápidos usados para detecção de coliforme totais e coliforme fecais em amostras de água, em comparação com a técnica de fermentação em tubos múltiplos

Pós-graduação em Alimentos e Nutrição - FCFAR

Linguiça cuiabana: histórico e aspectos tecnológicos de fabricação

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Qualidade microbiológica e ocorrência de leveduras em polpas congeladas de frutas

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Qualidade microbiológica e ocorrência de leveduras em leite pasteurizado tipos A, B e C

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Efeito do uso de enzimas proteolíticas na maturação de queijo Prato com teor reduzido de gordura

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)