Biology of Bombay duck, Harpodon nehereus (Ham., 1822), from Mumbai waters, India

Morphometric and meristic study of Harpodon nehereus (Hamilton, 1822) from Mumbai waters indicated that the specimens belonged to a homogenous population. Based on the meristic study, the fin formula can be written as B sub(23-269), D sub(12-139), P sub(11-139), V sub(9), A sub(13-15), C sub(19), L sub(40). Length-weight study revealed an allometric relationship, presented as Log W= -3.1362 + 3.6059 Log L. The analysis of food and feeding habits revealed the species to be voracious, carnivorous and cannibalistic, feeding mainly on Acetes spp., juveniles of H. nehereus itself, prawns and Coilia dussumieri. The feeding intensity was found to be the maximum during September and November, and also in mature specimens which may be the preparation for the ensuing spawning activity. Reproductive biology indicated two peak spawning seasons in November and March. However, the species as a whole has prolonged breeding season and spawning occurs throughout the year. Average fecundity was estimated as 314 ova/g body weight of fish and the length at which 50% of female specimens mature (Lc sub (50)) was calculated as 255 mm.

Some aspects of the biology of Johnieops sina (Cuvier, 1830) from Mumbai waters

Investigations on food and feeding of Johnieops sina indicated that it feeds mainly on penaeid prawns, Acetes spp. and fishes. Penaeid prawns were found to be its preferred food item. The spawning activity was observed throughout the year with two peaks in February and August, supported by prominent peaks of gonadosomatic index in the same months. The minimum size at first maturity for females was 153 mm. The absolute fecundity ranged from 28,495 to 135,346 eggs for the ovaries weighing 1.30 to 9.49 g.

Reproductive biology of freshwater crab, Paratelphusa spinigera, Wood Mason (Crustacea-Decapoda)

This study was aimed to analyze the annual reproductive cycle of the freshwater crab Paratelphusa spinigera (Wood Mason, 1871). P. spinigera breeds only once in a year; hence, it is a monovoltine species. Gonad maturation, changes in abdomen shape, size and female maturity index (FMI) marked the onset of sexual maturity of female P. spinigera. The occurrence of berried females marked the onset of breeding season. The fecundity of P. spinigera ranged from 533 to 1306 in number, with an average of 699.11 ± 217.38. The correlation of fecundity with carapace width and body weight was also found to be positively significant (r = 0. 780 and 0.933, respectively). The eggs were carried on the pleopods and nurtured for approximately 30-35 days, until the eggs hatch, showing perfect maternal care. The FMI values ranging between 0.70 and 0.80 represented immature stage of gonadal development. When the FMI ranged from 0.91 to 1.00, all stages of gonadal development, i.e. developing, maturing and mature stages were observed. The females with fully ripe ovary had FMI values greater than 1.00.

Distribution, biology and behaviour of the giant trevally, Caranx ignobilis- a candidate species for mariculture

Fishery and biology of the giant trevally, Caranx ignobilis exploited along the Tuticorin coast of Tamilnadu were monitored during 2001-2006. Fishery occurred round the year with peak landings during April-August. Spawning and recruitment occur almost round the year with peak during November-December. Young ones are abundant in shallow coastal waters and as grows, they move to deeper waters. Growth parameters, L"' and K are estimated respectively as 143.6 cm and 0.69/year and 'to' as -0.0242 year. Estimates show that they grow fast and attain 73, 108, 126 and 134 cm in total length by first, second, third and fourth year respectively. Their weight increment is also fast and attains 5.5 kg, 16.8 kg, 25.9 kg and 33.7 kg respectively during the period. Stock assessment indicated that the stock at present is over exploited and under heavy fishing pressure. Rearing trial in aquarium tank showed that they are compatible to confined rearing conditions. Based on the distribution and biology of the species, their mariculture potential is discussed.

Control theory and systems biology

Presenting a control-theoretic treatment of stoichiometric systems, ... local parametric sensitivity analysis, the two approaches yield identical results. ...

Biology of fouling in Neendakara port, a tropical estuary in the south west coast of India

Species composition and some aspects of the biology of the fouling community in Neendakara port (southwest coast of India) has been examined for a period of one year. Fouling organisms were collected with a system of glass panels exposed for varying durations and during different months in the port. One species of sponge, nine species of coelenterates, thirteen species of polyzoans, four species of mud-tube dwelling polychaetes, four species of serpulids, one species each of mud-tube forming amphipod and tanaid, two species of oysters, six species of mussels and not less than eight species of tunicates were the macro fouler which settled over the panels. Monthly and seasonal settlement of the different species has been recorded. Fouling has been a continuous process occurring throughout the year in Neendakara port with slightly fluctuating biomass and considerably varying species composition. Alternate species dominance of marine and brackish water forms has been an important feature of fouling in the area. Number of species of the sedentary fouling animals represented on test panels has been high during the highly saline pre-monsoon period and low during the monsoon period.

Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals

An analysis of the nuclear beta-fibrinogen intron 7 locus from 30 taxa representing 12 placental orders of mammals reveals the enriched occurrences of short interspersed clement (SINE) insertion events. Mammalian-wide interspersed repeats (MIRs) are present at orthologous sites of all examined species except those in the order Rodentia. The higher substitution rate in mouse and a rare MIR deletion from rat account for the absence of MIR in the rodents. A minimum of five lineage-specific SINE sequences are also found to have independently inserted into this intron in Carnivora, Artiodactyla and Lagomorpha. In the case of Carnivora, the unique amplification pattern of order-specific CAN SINE provides important evidence for the "pan-carnivore" hypothesis of this repeat element and reveals that the CAN SINE family may still be active today. Particularly interesting is the finding that all identified lineage-specific SINE elements show a strong tendency to insert within or in very close proximity to the preexisting MIRs for their efficient integrations, suggesting that the MIR clement is a hot spot for successive insertions of other SINEs. The unexpected MIR excision as a result of a random deletion in the rat intron locus and the non-random site targeting detected by this study indicate that SINEs actually have a greater insertional flexibility and regional specificity than had previously been recognized. Implications for SINE sequence evolution upon and following integration, as well as the fascinating interactions between retroposons and the host genomes are discussed.

Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia

Background: Previously reported evidence indicates that pigs were independently domesticated in multiple places throughout the world. However, a detailed picture of the origin and dispersal of domestic pigs in East Asia has not yet been reported. Results:

Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability

The evolution of flight is the most important feature of birds, and this ability has helped them become one of the most successful groups of vertebrates. However, some species have independently lost their ability to fly. The degeneration of flight abilit

Biology and farming of the green mussel Mytilus smaragdinus

Biological investigations were carried out in Sapian Bay, Capiz from November 1975 to December 1976 with samplings conducted fortnightly. Histological studies on the gonad reveal a high percentage of ripe and spent females during the month of April and May, and ripe to near ripe during November to December. However, larval counts were highest on February 25, 1976 with 253 mytilid larvae per haul compared to 0-79 per haul during all other months. The high larval count was followed by the highest spat settlement during the next sampling period two weeks later, with the spat collector set in the water during the February 25 sampling. The four materials tested, blue polypropylene fiber rope, black polypropylene fiber, and coir rope, all had their highest spat counts during this period with an average of 471 spats per standard 10 cm rope piece. The range during the other time periods is 2-283 spats. Of the 4 materials tested, the black fibrillated polypropylene film had the highest larval counts in 15 out of a total of 25 sampling periods. The blue rope was the poorest spat collector. Coconut husk was tested later on and it proved to have a very high catchability, with spats completely enveloping the husk surface. Growth monitored from one cohort in Sapian Bay averaged 10 mm per month. 50-60 mm is considered marketable size. Trial growth experiments with transplanted mussels were also conducted at Igang Bay in Guimaras Island, Makato River in Aklan, and a milkfish pond in Leganes, Iloilo. Survival in Igang was less than 50% after the second week, and the condition of the surviving mussels can be described only as 'watery' with the mantle completely transparent. Mortality was minimal in Makato but the growth rate was only 30% that of Sapian Bay. The pond experiments were terminated due to severe crab predation.

The biology and control of Caligus sp., an ectoparasite of the adult milkfish Chanos chanos Forskal

One unidentified species of copepod belonging to the genus Caliqus of the family Caigidae was found to infest the adult milkfish broodstock. To control the parasites infesting the adult milkfish, tests were made using the chemical (2,2,2-trichloro-1-hydroxyl)-phosphonic acid-dimethylethol (Neguvon) at a concentration of 0 . 25 ppm. It is noted that a concentration of 0 . 25 ppm of Neguvon maintained for 12-24 hours in the sabalo-containing tanks in a closed water system but with aeration is effective in controlling the parasites. Fish mortality during the experiment was due to inadequate aeration in the tanks.

Identification and molecular evolution of cow CENP-A gene family

The centromere protein A (CENP-A), a histone H3-like protein, provides an essential role for chromosomal segregation during mitosis and meiosis. In this study we identified ten new CENP-A-like genes (excluding the original CENP-A gene) in cow by searching

Origin and evolution of new exons in rodents

Gene number difference among organisms demonstrates that new gene origination is a fundamental biological process in evolution. Exon shuffling has been universally observed in the formation of new genes. Yet to be learned are the ways new exons originate and evolve, and how often new exons appear. To address these questions, we identified 2695 newly evolved exons in the mouse and rat by comparing the expressed sequences of 12,419 orthologous genes between human and mouse, using 743,856 pig ESTs as the outgroup. The new exon origination rate is about 2.71 x 10(-3) per gene per million years. These new exons have markedly accelerated rates both of nonsynonymous substitutions and of insertions/ deletions (indels). A much higher proportion of new exons have Kappa(a)/Kappa(s) ratios > 1 (where K-a is the nonsynonymous substitution rate and K-s is the synonymous substitution rate) than K do the old exons shared by human and mouse, implying a role of positive selection in the rapid evolution. The majority of these new exons have sequences unique in the genome, suggesting that most new exons might originate through "exonization" of intronic sequences. Most of the new exons appear to be alternative exons that are expressed at low levels.

On the origin of new genes in Drosophila

Several mechanisms have been proposed to account for the origination of new genes. Despite extensive case studies, the general principles governing this fundamental process are still unclear at the whole-genome level. Here, we unveil genome-wide patterns

Relaxation of yeast mitochondrial functions after whole-genome duplication

Mitochondria are essential for cellular energy production in most eukaryotic organisms. However, when glucose is abundant, yeast species that underwent whole-genome duplication (WGD) mostly conduct fermentation even under aerobic conditions, and most can