Cloning of hypoxia-inducible factor 1 alpha cDNA from a high hypoxia tolerant mammal - plateau pika (Ochotona curzoniae)

Hypoxia-inducible factor I is a transcription factor composed of HIF-1alpha and HIF-1beta. It plays an important role in the signal transduction of cell response to hypoxia. Plateau pika (Ochotona curzoniae) is a high hypoxia-tolerant and cold adaptation species livin only at 3000-5000m above sea level on the Qinghai-Tibet Plateau. In this study, HIF-1alpha cDNA of plateau pika was cloned and its expression in various tissues was studied. The results indicated that plateau pika HIF-1alpha cDNA was highly identical to those of the human (82%), bovine (89%), mouse (82%), and Norway rat (77%). The deduced amino acid sequence (822 bp) showed 90%, 92%, 86%, and 86% identities with those of the human, bovine, house mouse, and Norway rat, respectively. Northern blot analyses detected two isoforms named pLHIF-1alpha and pSHIF-1alpha. The HIF-1alpha mRNA was highly expressed in the brain and kidney, and much less in the heart, lung, liver, muscle, and spleen, which was quite different from the expression pattern of mouse mRNA. Meanwhile, a new variant of plateau pika HIF-1alpha mRNA was identified by RT-PCR and characterized. The deduced protein, composed of 536 amino acids, lacks a part of the oxygen-dependent degradation domain (ODD), both transactivation domains (TADs), and the nuclear localization signal motif (NLS). Our results suggest that HIF-1alpha may play an important role in the pika's adaptation to hypoxia, especially in brain and kidney, and pika HIF-1alpha function pattern may be different from that of mouse HIF-1alpha. Further-more, for the high ratio of HIF-1alpha homology among the animals, the HIF-1alpha gene may be a good phylogenetic performer in recovering the true phylogenetic relationships among taxa. (C) 2004 Elsevier Inc. All rights reserved.

Endothelial microparticles released in thrombotic thrombocytopenic purpura express von Willebrand factor and markers of endothelial activation

It has been suggested that endothelial apoptosis is a primary lesion in the pathogenesis of thrombotic thrombocytopenic purpura (TTP). We tested this hypothesis by examining the phenotypic signatures of endothelial microparticles (EMP) in TTP patients. In addition, the effect of TTP plasma on microvascular endothelial cells (MVEC) in culture was further delineated. EMP released by endothelial cells (EC) express markers of the parent EC; EMP released in activation carry predominantly CD54 and CD62E, while those in apoptosis CD31 and CD105. We investigated EMP release in vitro and in TTP patients. Following incubation of MVEC with TTP plasma, EMP and EC were analysed by flow cytometry for the expression of CD31, CD51, CD54, CD62E, CD105, CD106 and von Willebrand factor (VWF) antigen. EMP were also analysed in 12 TTP patients. In both EC and EMP, CD62E and CD54 expression were increased 3- to 10-fold and 8- to 10-fold respectively. However, CD31 and CD105 were reduced 40-60% in EC but increased twofold in EMP. VWF expression was found in 55 +/- 15% of CD62E(+) EMP. Markers of apoptosis were negative. In TTP patients, CD62E(+) and CD31(+)/CD42b(-) EMP were markedly elevated, and preceded and correlated well with a rise in platelet counts and a fall in lactate dehydrogenase. CD62E(+) EMP (60 +/- 20%) co-expressed VWF and CD62E. The ratio of CD31(+)/42b(-) to CD62E(+) EMP exhibited a pattern consistent with activation. In conclusion, our studies indicate endothelial activation in TTP. EMP that co-express VWF and CD62E could play a role in the pathogenesis of TTP.

内蒙古草地植被群落生物量的梯度特征研究

Relationship between biology and environment is always the theme of ecology. Transect is becoming one of the important methods in studies on relationship between global change and terrestrial ecosystems, especially for analysis of its driving factors. Inner Mongolia Grassland is the most important in China Grassland Transect brought forward by Yu GR. In this study, changes in grassland community biomass along gradients of weather conditions in Inner Mongolia was researched by the method of transect. Methods of regression about biomass were also compared. The transect was set from Eerguna county to Alashan county (38° 07' 35" ~50° 12' 20" N, 101° 55' 25" -120° 20' 46" E) in Inner Mongolia, China. The sample sites were mainly chosen along the gradient of grassland type, meadow steppe-* typical steppe-*desert steppe-*steppification desert-^desert. The study was carried out when grassland community biomass got the peak in August or September, 2003 and 2004. And data of 49 sample sites was gotten, which included biomass, mean annual temperature, annual precipitation, accumulated temperature above zero, annual hours of sunshine and other statistical and descriptive data. The aboveground biomass was harvested, and the belowground biomass was obtained by coring (30 cm deep). Then all the biomass samples were dried within (80 + 5) °C in oven and weighted. The conclusion is as follows: 1) From the northeast to the southwest in Inner Mongolia, along the gradient of grassland type, meadow steppe-*typical steppe-*desert steppe-*steppification desert-* desert, the cover degree of vegetation community reduces. 2) By unitary regression analysis, biomass is negatively correlated with mean annual temperature, s^CTC accumulated temperature, ^10°C accumulated temperature and annual hours of sunshine, among which mean annual temperature is crucial, and positively with mean annual precipitation and mean annual relative humidity, and the correlation coefficient between biomass and mean annual relative humidity is higher. Altitude doesn't act on it evidently. Result of multiple regression analysis indicates that as the primary restrictive factor, precipitation affects biomass through complicated way on large scale, and its impaction is certainly important. Along the gradient of grassland type, total biomass reduces. The proportion of aboveground biomass to total biomass reduces and then increases after desert steppe. The trend of below ground biomass's proportion to total biomass is adverse to that of aboveground biomass. 3) Precipitation is not always the only driving factor along the transect for below-/aboveground biomass ratio of different vegetation type composed by different species, and distribution of temperature and precipitation is more important, which is much different among climatic regions, so that the trend of below-/aboveground biomass ratio along the grassland transect may change much through the circumscription of semiarid region and arid region. 4) Among reproductive allocation of aboveground biomass, only the proportion of stem in total biomass notably correlates to the given parameters. Stem/leaf biomass ratio decreases when longitude and latitude increase, caloric variables decrease, and variables about water increase from desert to meadow steppe. The change trends are good modeled by logarithm or binomial equations. 5) 0'-10 cm belowground biomass highly correlates to environmental parameters, whose proportion to total biomass changes most distinctly and increases along the gradient from the west to the east. The deeper belowground biomass responses to the environmental change on the adverse trend but not so sensitively as the surface layer. Because the change value of 0~10 cm belowground biomass is always more than that of below 10 cm along the gradient, the deference between them is balanced by aboveground biomass's change by the resource allocation equilibrium hypothesis.

Garbage Collection is Fast, But a Stack is Faster

Prompted by claims that garbage collection can outperform stack allocation when sufficient physical memory is available, we present a careful analysis and set of cross-architecture measurements comparing these two approaches for the implementation of continuation (procedure call) frames. When the frames are allocated on a heap they require additional space, increase the amount of data transferred between memory and registers, and, on current architectures, require more instructions. We find that stack allocation of continuation frames outperforms heap allocation in some cases by almost a factor of three. Thus, stacks remain an important implementation technique for procedure calls, even in the presence of an efficient, compacting garbage collector and large amounts of memory.

A Constant-Factor Approximation Algorithm for Embedding Unweighted Graphs into Trees

We present a constant-factor approximation algorithm for computing an embedding of the shortest path metric of an unweighted graph into a tree, that minimizes the multiplicative distortion.

Sparsely Faceted Arrays: A Mechanism Supporting Parallel Allocation, Communication, and Garbage Collection

Conventional parallel computer architectures do not provide support for non-uniformly distributed objects. In this thesis, I introduce sparsely faceted arrays (SFAs), a new low-level mechanism for naming regions of memory, or facets, on different processors in a distributed, shared memory parallel processing system. Sparsely faceted arrays address the disconnect between the global distributed arrays provided by conventional architectures (e.g. the Cray T3 series), and the requirements of high-level parallel programming methods that wish to use objects that are distributed over only a subset of processing elements. A sparsely faceted array names a virtual globally-distributed array, but actual facets are lazily allocated. By providing simple semantics and making efficient use of memory, SFAs enable efficient implementation of a variety of non-uniformly distributed data structures and related algorithms. I present example applications which use SFAs, and describe and evaluate simple hardware mechanisms for implementing SFAs. Keeping track of which nodes have allocated facets for a particular SFA is an important task that suggests the need for automatic memory management, including garbage collection. To address this need, I first argue that conventional tracing techniques such as mark/sweep and copying GC are inherently unscalable in parallel systems. I then present a parallel memory-management strategy, based on reference-counting, that is capable of garbage collecting sparsely faceted arrays. I also discuss opportunities for hardware support of this garbage collection strategy. I have implemented a high-level hardware/OS simulator featuring hardware support for sparsely faceted arrays and automatic garbage collection. I describe the simulator and outline a few of the numerous details associated with a "real" implementation of SFAs and SFA-aware garbage collection. Simulation results are used throughout this thesis in the evaluation of hardware support mechanisms.

Capillary zone electrophoresis investigation of interactions between granulocyte-colony stimulating factor and dextran sulfate/carrageenan oligosaccharide

The interactions between granulocyte-colony stimulating factor (G-CSF) and dextran sulfate/kappa-carrageenan oligosaccharide were studied by capillary zone electrophoresis. Dextran sulfate could strongly interact with G-CSF and the complex was detected. The binding constant and stoichiometry were determined to be 1.2x10(6) (mol/L)(-1) and 3:1, respectively. However, the interaction between K-carrageenan oligosaccharide and G-CSF was not found.

The lack of associations between alleles at the hypoxia-Inducible factor 1A C1772T loci and responses to acute hypoxia.

Objective The aim of this study was to investigate the associations between alleles of the hypoxia-inducible factor 1A (HIF1A) C1772T polymorphism and several physiological responses to hypoxia, including the hypoxic ventilatory response (HVR), and serum erythropoietin (EPO), arterial oxygen saturation (Sao2), and acute mountain sickness (AMS) responses during 8 hours of exposure to normobaric hypoxia. Methods A total of 76 males participated in the study; 52 participants completed an 8-hour exposure to 12.7% oxygen, during which time Sao2, EPO concentrations, and AMS scores were measured, while 62 individuals took part in an HVR trial (in total 38 individuals completed both protocols). DNA was obtained from leukocytes, and a 346-bp fragment of the HIF1A gene containing the C1772T polymorphism was amplified using polymerase chain reaction. Fragments were sequenced to reveal individual genotypes, and the associations between HIF1A genotype and EPO, Sao2, AMS responses to hypoxia and HVR were examined. Results The magnitude of the hypoxic responses was highly variable between individuals. The increase in participants' EPO responses ranged from 89% to 388% of baseline values following hypoxia, while Sao2 values during the exposure ranged from 71% to 89%. The HVR ranged from −0.04 to +2.18 L · min−1 · Sao2%−1 among participants. No significant differences in EPO, Sao2, AMS, or HVR results were observed between the HIF1A CC genotype and the combined CT/TT genotype group. Conclusion In this study, the HIF1A C1772T polymorphism does not appear to influence EPO, Sao2, or AMS responses during acute hypoxic exposure, or the magnitude of the HVR.

The effect of the product cost factor on error handling in industrial robots

N.W. Hardy and M.H. Lee. The effect of the product cost factor on error handling in industrial robots. In Maria Gini, editor, Detecting and Resolving Errors in Manufacturing Systems. Papers from the 1994 AAAI Spring Symposium Series, pages 59-64, Menlo Park, CA, March 1994. The AAAI Press. Technical Report SS-94-04, ISBN 0-929280-60-1.