An R package for simulating metapopulation dynamics and range expansion under environmental change

The metapopulation paradigm is central in ecology and conservation biology to understand the dynamics of spatially-structured populations in fragmented landscapes. Metapopulations are often studied using simulation modelling, and there is an increasing demand of user-friendly software tools to simulate metapopulation responses to environmental change. Here we describe the MetaLandSim R package, mwhich integrates ideas from metapopulation and graph theories to simulate the dynamics of real and virtual metapopulations. The package offers tools to (i) estimate metapopulation parameters from empirical data, (ii) to predict variation in patch occupancy over time in static and dynamic landscapes, either real or virtual, and (iii) to quantify the patterns and speed of metapopulation expansion into empty landscapes. MetaLandSim thus provides detailed information on metapopulation processes, which can be easily combined with land use and climate change scenarios to predict metapopulation dynamics and range expansion for a variety of taxa and ecological systems.

A industrialização como criadora de conjuntos habitacionais para o operariado: o caso do Bairro da Empresa de Cimentos de Leiria: Maceira-Liz

A Revolução Industrial consistiu num amplo conjunto de mudanças que ocorreu nos séculos XVIII e XIX na Europa, em que a grande metamorfose na sociedade sucedeu devido à substituição do trabalho manual pelo uso da máquina. Constituiu-se como fenómeno abrangente que congregou fatores demográficos, sociais, ideológicos, políticos e económicos. A busca de melhores condições de vida e de trabalho, foi fator decisivo para o aumento de população nos grandes núcleos urbanos, circunstância que determinou a procura de uma solução que resolvesse a questão do alojamento da classe trabalhadora. Surgiram assim teorias utópicas e sociais e também modelos urbanísticos dos quais se salientam: o Falanstério de Charles Fourier, Familistério de Jean-Baptiste Godin entre outros. Em Portugal, a industrialização ocorreu mais tarde que na restante Europa, assim como as evoluções e transformações associadas a esta. É neste contexto, que a partir do século XIX, o sector agrícola no país foi sendo gradualmente substituído pela indústria. O aumento da industrialização conduziu a um incremento da concentração de mão-de-obra próxima de grandes cidades industriais, ocorrência que fomentou o aparecimento dos primeiros núcleos habitacionais destinados à classe operária. A cidade sofreu, assim, alterações assinaladas por uma série de acontecimentos resultantes da Revolução Industrial, a par da falta de estratégias ligadas à questão da habitação para as classes desfavorecidas. É neste enquadramento que surge o Bairro do Pessoal da Empresa de Cimento de Leiria, Maceira-Liz. Este procurou responder às necessidades dos trabalhadores oferecendo-lhes boa qualidade de vida. Foi dotado de infraestruturas e equipamentos como a “Casa do Pessoal” ou a Cooperativa Abastecedora, entre outros, necessários ao bom funcionamento e permitindo uma maior sociabilidade entres os seus habitantes Desta forma, para demostrar a sua importância, introduz-se o Bairro do Pessoal da E.C.L no estudo do contexto internacional e nacional. Observam-se e criam-se relações com os modelos das cidades utópicas do século XIX e os conjuntos industriais em Portugal, detentores de alojamento destinado à classe trabalhadora, fazendo uma análise urbanística detalhada do Bairro do Pessoal de Maceira- Liz, uma “Utopia” construída segundo o espirito progressista do seu fundador Henrique Sommer.A partir do estudo dos fundamentos teórico-práticos, da forma de implantação e construção, bem como dos vários planos elaborados para este complexo - que demonstravam uma tentativa de inovar, através da construção de respostas às mudanças da sociedade e arquitetura em Portugal- poderá observar- -se que Maceira-Liz tinha alternativas para resolver a situação sócio- laboral dos operários e tentava resolver questões como a insalubridade da habitação operária da I República. O Bairro do Pessoal de E.C.L. ou Bairro de Maceira-Liz é um dos mais significativos exemplos de urbanismo do tipo fabril em Portugal, que permite fazer uma reflexão crítica e arquitetónica do papel que a arquitetura assume face à questão das diferenças sociais de classes, ao mesmo tempo que se propõe uma solução de revitalização do Bairro a fim de contribuir para a sua preservação e conservação da sua identidade; ABSTRACT: The Industrial Revolution consisted in a wide range of changes that occurred in the eighteenth and nineteenth centuries in Europe, where the great metamorphosis in society succeeded due to the replacement of manual work by the use of machinery. It was established as a wide-ranging phenomenon which gathered demographic, social, ideological, political and economic factors. The search of better conditions of life and work was a decisive factor for the increase of population in major urban centers, a circumstance that led to the search for a solution to solve the question of working-class housing. Thus, utopian and social theories emerged, as also as urban models, of which we stand out: the Charles Fourier Phalanstery, Jean- Baptiste Godin Familistère and others. In Portugal, the industrialization occurred later than in the rest of Europe, as well as developments and changes associated with this. It is in this context that, starting in the nineteenth century, the agricultural sector in the country had been gradually replaced by the industry. The increased industrialization has led to an enlarged concentration of labor work close to major industrial cities, occurrence that fomented the appearance of the first housing units for the working class. So, the city suffered changes shown by a series of events resulting from the Industrial Revolution, together with the lack of strategies linked to the issue of housing for disadvantaged classes. It is in this context that comes the Neighborhood “Bairro do Pessoal da Empresa de Cimento de Leirio, Maceira – Liz”. This tried to respond to workers’ needs by offering them good quality of life. It was gifted with infrastructure and equipment as the “Staff Home” or the Cooperative Supplying, among others, needed for a proper functioning and allowing a greater sociability among its inhabitants. So, to demonstrate its importance, the Quarter of the Cement Company is introduced in the study of national and international context. Relationships with models of utopian cities in the nineteenth and the industrial plants in Portugal, owners of housing for the working class, are observed and created, making a detailed and urban analysis of the Quarter of the Cement Company, a “utopia “ built according to the progressive spirit of its founder Henry Sommer . From the study of the theoretical and practical fundamentals, the way of implementation and construction, as well as the various plans drawn up for this complex - which showed a determination to innovate by building responses to changes in society and architecture in Portugal - it can be founded that Maceira -Liz had alternatives to solve the socio- labor situation of the workers and tried to solve issues such as the unhealthiness of the working room of the First Republic. The Quarter of the Cement Company is one of the most significant examples of the industrial type urbanism in Portugal, which allows a critical and architectural reflection of the role that architecture assumes in what concerns the social class differences issues, while it is proposed a revitalization solution for the Neighborhood in order to contribute to the preservation and conservation of its identity

Francisco Pizarro' s banner of arms: an analytical work contributing to latin America's history

The study of textiles is an open area of scientific research, which for its variety of material components and physical chemical diversity of conditions, makes a field of interest for scientific studies in the cultural heritage field. Archaeological/historical textiles offer the possibility to carry out studies on organic materials such as fibers, adhesion elements, dyes, paper, etc., as well as on inorganic compounds for instance metals, alloys, precious stones and other added ornamentation. That variety of composition, allow to use a combination of analytical techniques to solve the questions coming from the object in an archaeometric research. One kind of textile object that provides a valuable cultural information because of its linguistic representation employed by its carrier societies, are the flags/banners/emblems, objects made with a nonverbal communication purpose. As long as depending on the use and/or purpose of each object, varies both the materials/techniques used in its production and its iconography (style, color, emblem, shape), its study gives the possibility to extract information through their materials and manufacturing techniques about a temporal-spatial frame, a particular event or a specific character. The flags/banners have been used since the eleventh century as representative objects of power, hierarchy, social or military organization, or as communicative media. The use of these objects has been spread throughout the world, possibly due to its easy interpretation and/or appropriation by different societies, making it part of their own culture. The flags as symbols of territorial control, using emblems that represent a family, order or army, were introduced to the New World (America) with the arrival of the European conquerors at the end of the fifteenth century. Flags/banners representing the Royal dominion over conquered territories, the Catholic Church and conquistadors’ armies were the first to arrive. One of those flags that have endured over time, that have an invaluable cultural meaning for both American and Iberian societies, is the so-called Francisco Pizarro’s Banner of Arms. It is a textile object with metal threads decoration over a Royal emblem. According to historical sources, this object was used by Francisco Pizarro in 1532 on the conquest process of Peru, after received the permission by King Charles V to on behalf of him, to conquer the lands of the New World today known as Peru. After Pizarro’s control of the Inca territory, it is believed that Pizarro left his banner on top of the Inca’s Sun’s Temple as symbol of his rule. Centuries later, in the America libertarian campaigns, General Sucre, military at charge of the independence army in Peru, reports have found what he considered the Pizarro’s Banner, sending it to Bogotá as a symbol of victory, being kept since that time until today by the National Museum of Colombia. Due to historical discrepancies in the different movements of the so-called Pizarro’s Banner of Arms, its real meaning has been under discussion and because of the passage of time its physical condition has suffer deterioration. That is because its scientific study is now an interesting case study to respond to both historical and conservation questions of it. Through a collaboration with the National Museum of Colombia, a set of 25 samples of so-called Pizarro’s Banner of Arms were collected, covering the various components and areas from the object of study. These samples were subjected to analytical studies for physical and chemical characterization. Microscopic observation, VSEM-EDS analysis, Raman spectroscopy, chromatographic analysis (HPLC-MS, GCMS) and radiocarbon dating were done. Similarly, was sought through a direct in situ physical inspection to the object and through a research into historical sources, adequate information to solve the object’s problems. Results obtained allowed to identify as silk the textile used in the elaboration of the Banner’s fabric, as well as the use of natural dyes for dyeing the fibers used on the emblem: use of cochineal and brazil wood as a source of red, luteolin plant-based for yellow color, indigotine plant-based for blue, and a mixture of yellow and blue dyes for green were identified. Similarly, the use of animal glue in the manufacturing process and the use of rag paper was evident. The metal threads study from the Banner give a confirmation to a silver core wire gilded with a thin gold sheet, being flattened and entwined with silk threads for their use. Finally, using the radiocarbon results, it was possible to postulate with huge accuracy that the Banner date manufacture was between the XV-XVI century and subject to restoration processes with addition of textiles in modern times. Together with, was evident that the state of degradation of the fabric is due to natural degradation in the silk fibers, having that its color has faded and its mechanical properties decreased, leading to loss of rigidity and disappearance of the physical structure. Similarly, it was clear the original colors of the emblem and highlight problems of detachment of paper due to crystallization of the adhesive. In the same way, was found that the metal threads suffer corrosion by sulfur and detachment of its crystals. Finally, combining the analytical results and the historical sources data found from the so-called Francisco Pizarro’s Banner of Arms, allows to postulate that its manufacture process was done in Europe employing precious materials to obtain a long-life object with a deep message for its viewers. Also, the data obtained helps to support the possible idea that the object was employed by Francisco Pizarro in the Peru conquest process. However, by the symbols present in the object, its elaboration date and materials, this object its clearly unique in its kind, and the most important, by its linguistic message, does not represent to Francisco Pizarro or his army, meanwhile, represents the Spanish crown. Therefore, instead to be labeled as Francisco Pizarro’s Banner of Arms, it should be called the Colonial Royal Banner of Charles V in the New World; RESUMEN: El estudio de textiles es un área abierta de investigación científica, la cual por su variedad de componentes materiales y la diversidad de condiciones físico-químicas presentes en estos objetos, lo hace un campo de interés para estudios científicos en el patrimonio cultural. Los textiles arqueológicos/históricos brindan la posibilidad de realizar estudios en materiales orgánicos como fibras, elementos de adhesión, tinturas, papel, etc., e inorgánicos como metales, aleaciones, piedras preciosas y demás materiales decorativos añadidos. Por su variedad de composición, es posible emplear diversas técnicas analíticas para resolver aquellas preguntas propias del objeto en una investigación arqueométrica. Uno de los objetos textiles que brinda gran información cultural debido a su representación lingüística empleada por las sociedades portadoras, son las banderas/estandartes/emblemas. Donde varía dependiendo de su uso y/o propósito, los materiales empleados en su elaboración, al igual que su iconografía (estilo, color, emblema, forma). El estudio de estos objetos construidos con un propósito de comunicación no verbal, da la posibilidad de extraer información a través de sus materiales y técnicas de elaboración sobre un rango temporal-espacial, un evento determinado en la historia o incluso a un personaje en específico. Las banderas han sido empleadas desde el siglo XI como objetos representativos de poder, jerarquía, organización social o militar, o como medio de comunicación. El uso de estos objetos se ha extendido a lo largo del mundo posiblemente debido a su fácil interpretación y/o apropiación por distintas sociedades, haciéndolo parte de su cultura. Las banderas como símbolos de control territorial, empleando símbolos que representan a una familia, orden o armada fueron introducidas a el Nuevo Mundo (América) con la llegada de los conquistadores europeos al final del siglo XV. Las banderas/estandartes que representaban el dominio Real sobre territorios dominados, la iglesia católica y las banderas de ejércitos y/o conquistadores fueron las primeras en llegar al nuevo mundo. Una de aquellas banderas que ha soportado el paso del tiempo, teniendo un gran valor cultural tanto para las sociedades americanas como para las ibéricas, es el denominado Estandarte de armas de Francisco Pizarro. Siendo un objeto textil con decoración en hilos metálicos sobre un emblema Real. De acuerdo a fuentes históricas, este objeto fue usado por Francisco Pizarro en 1532 en el proceso de conquista del Perú, quien recibe por parte del Rey Carlos V el poder para que, en su nombre, Pizarro pueda conquistar las tierras del nuevo mundo hoy conocidas como Perú. Luego del dominio de Pizarro sobre el territorio Inca, se cree que Pizarro dejó su estandarte en la cima del templo Inca del sol como símbolo de su control. Siglos más tarde, en las campañas libertarias de América, el General Sucre, militar encargado de la armada independentista en Perú, reporta haber encontrado lo que él considera como el estandarte de Pizarro, enviándolo a Bogotá como muestra de victoria, siendo custodiada desde ese momento por el Museo Nacional de Colombia hasta la actualidad. Debido a discrepancias históricas, el verdadero significado del llamado estandarte de Pizarro ha sido objeto de discusión y debido del pasar del tiempo su estado de conservación se ha deteriorado. Dejando de este modo, un caso de estudio interesante para que por medio de estudios científicos al objeto se pueda dar respuesta a preguntas tanto históricas como de conservación del mismo. De este modo, por medio de una colaboración con el Museo Nacional de Colombia, se obtuvo un juego de 25 muestras del llamado Estandarte de armas de Francisco Pizarro, abarcando los diferentes componentes y áreas del objeto de estudio. Dichas muestras fueron sometidas a estudios analíticos para su caracterización físico-química. Análisis de observación al microscopio, análisis VSEM-EDS, espectroscopia Raman, análisis cromatográficos (HPLC-MS, GC-MS) y datación por radiocarbono catorce fueron realizados. Del mismo modo, por medio de una inspección física al objeto in situ y una profunda investigación en fuentes históricas del mismo, se buscó la información adecuada para resolver sus problemáticas. Los resultados obtenidos permitieron identificar como seda el textil empleado en la elaboración del estandarte, así como el uso de colorantes naturales para teñir las fibras en el emblema: uso de cochinilla y palo de Brasil como fuente del color rojo, plantas a base de luteolin para el color amarillo, plantas a base de indigotina para el color azul y mezcla de colorantes amarillos y azules para el color verde fueron identificadas. Del mismo modo se evidencio el uso de adhesivos animales y el uso de papel de trapos en el proceso de manufactura. El estudio de los hilos metálicos, permitió evidenciar el uso de alambres con núcleos de plata con un fino recubrimiento de oro en su exterior, siendo aplanados y entrelazados con hilos de seda para su uso. Finalmente usando la datación por radiocarbono, fue posible conocer con alta precisión que el estandarte fue elaborado entre los siglos XV-XVI y sufrió procesos de restauración con añadidura de textiles en tiempos modernos. Junto a lo anterior, es posible postular que el estado de degradación de la tela es debido a degradación natural en las fibras de seda, teniendo así que su color se ha desvanecido y sus propiedades mecánicas disminuidas, conllevando a perdida de rigidez y desaparición de la estructura. Del mismo modo se pudo conocer los colores originales del emblema y evidenciar problemas de desprendimiento del papel debido a cristalización del adhesivo. Asimismo, se comprobó que los hilos metálicos presentan corrosión por azufre y desprendimiento de sus cristales. Finalmente, combinando los resultados analíticos y la información de fuentes históricas encontradas del llamado Estandarte de armas de Francisco Pizarro, se puede postular que su elaboración fue realizada en Europa, usando materiales preciosos para obtener un objeto de larga vida con un profundo mensaje para sus observadores. También, los datos obtenidos ayudan a dar soporte la posible idea de que este objeto fue usado por Francisco Pizarro en el proceso de conquista del Perú. Sin embargo, debido a los símbolos presentes en el objeto, fecha y materiales de elaboración, este objeto es claramente único en su tipo, y lo más importante, por su mensaje lingüístico, este no representa a Francisco Pizarro o su armada, al contrario, representa a la Corona de España. Por ende, en vez de denominarse como Estandarte de armas de Francisco Pizarro, este objeto debería nombrarse como el Estandarte Real de la Colonia de Carlos V en el Nuevo Mundo.

Non perennial Mediterranean Rivers in Europe: Status, pressurs, and challanges for research and management

Non-perennial rivers and streams (NPRS) cover >50% of the global river network. They are particularly predominant in Mediterranean Europe as a result of dry climate conditions, climate change and land use development. Historically, both scientists and policy makers underestimated the importance of NRPS for nature and humans alike, mainly because they have been considered as systems of low ecological and economic value. During the past decades, diminishing water resources have increased the spatial and temporal extent of artificial NPRS as well as their exposure to multiple stressors, which threatening their ecological integrity, biodiversity and ecosystem services. In this paper, we provide a comprehensive overview of the structural and functional characteristics of NPRS in the European Mediterranean, and discuss gaps and problems in their management, concerning their typology, ecological assessment, legislative and policy protection, and incorporation in River Basin Management Plans. Because NPRS comprise highly unstable ecosystems, with strong and often unpredictable temporal and spatial variability - at least as far as it is possible to assess - we outline the future research needs required to better understand, manage and conserve them as highly valuable and sensitive ecosystems. Efficient collaborative activities among multidisciplinary research groups aiming to create innovative knowledge, water managers and policy makers are urgently needed in order to establish an appropriate methodological and legislative background. The incorporation of NPRS in EU-Med River Basin Management Plans in combination with the application of ecological flows is a first step towards enhancing NPRS management and conservation in order to effectively safeguard these highly valuable albeit threatened ecosystems

Coastal Forests of Kenya-Ecology, Biodiversity & Conservation

Aims: the broad objective of this study is to investigate the ecological, biodiversity and conservation status of the coastal forests of Kenya fragments. The specific aims of the study are: (1) to investigate current quantitative trends in plant diversity; (2) develop a spatial and standardised vegetation database for the coastal forests Kenya; (3) investigate forest structure, species diversity and composition across the forests; (4) investigate the effect of forest fragment area on plant species diversity; (5) investigate phylogenetic diversity across these coastal remnants (6) assess vulnerability and provide conservation perspectives to concrete policy issues; (7) investigate plant and butterfly diversity correlation. Methods: I performed various analytical methods including species diversity metrics; multiple regression models for species-area relationship and small island effect; non-metric multidimensional scaling; ANOSIM; PERMANOVA; multiplicative beta diversity partitioning; species accumulation curve and species indicator analysis; statistical tests, rarefaction of species richness; phylogenetic diversity metrics of Phylogenetic diversity index, mean pairwise distance, mean nearest taxon distance, and their null-models: and Co-correspondence analysis. Results: developed the first large standardised, spatial and geo-referenced vegetation database for coastal forests of Kenya consisting of 600 plant species, across 25 forest fragments using 158 plots subdivided into 3160 subplots, 18 sacred forests and seven forest reserves; species diversity, composition and forest structure was significantly different across forest sites and between forest reserves and sacred forests, higher beta diversity, species-area relationship explained significant variability of plant diversity, small Island effect was not evident; sacred forests exhibited higher phylogenetic diversity compared to forest reserves; the threatened Red List species contributed higher evolutionary history; a strong correlation between plants and butterfly diversity. Conclusions: This study provides for the first time a standardized and large vegetation data. Results emphasizes need to improve sacred forests protection status and enhance forest connectivity across forest reserves and sacred forests.

The mesophotic zone of the Mediterranean Sea: spatial definition, biodiversity, and predictive models

The mesophotic zone is frequently defined as ranging between 30-40 and 150 m depth. However, these borders are necessarily imprecise due to variations in the penetration of light along the water column related to local factors. Moreover, density of data on mesophotic ecosystems vary along geographical distance, with temperate latitudes largely less explored than tropical situations. This is the case of the Mediterranean Sea, where information on mesophotic ecosystems is largely lower with respect to tropical situations. The lack of a clear definition of the borders of the mesophotic zone may represent a problem when information must be transferred to the policy that requires a coherent spatial definition to plan proper management and conservation measures. The present thesis aims at providing information on the spatial definition of the mesophotic zone in the Mediterranean Sea, its biodiversity and distribution of its ecosystems. The first chapter analyzes information on mesophotic ecosystems in the Mediterranean Sea to identify gaps in the literature and map the mesophotic zone in the Mediterranean Sea using light penetration estimated from satellite data. In the second chapter, different visual techniques to study mesophotic ecosystems are compared to identify the best analytical method to estimate diversity and habitat extension. In the third chapter, a set of Remotely Operated vehicles (ROV) surveys performed on mesophotic assemblages in the Mediterranean Sea are analyzed to describe their taxonomic and functional diversity and environmental factors influencing their structure. A Habitat Suitability Model is run in the fourth chapter to map the distribution of areas suitable for the presence of deep-water oyster reefs in the Adriatic-Ionian area. The fifth chapter explores the mesophotic zone in the northern Gulf of Mexico providing its spatial and vertical extension of the mesophotic zone and information on the diversity associated with mesophotic ecosystems.

Early-stage deformation localisation in thrust systems: new perspectives from carbonates in the Italian Southern Alps and Oman Mountains

This thesis investigates mechanisms and boundary conditions that steer the early localisation of deformation and strain in carbonate multilayers involved in thrust systems, under shallow and mid-crustal conditions. Much is already understood about deformation localisation, but some key points remain loosely constrained. They encompass i) the understanding of which structural domains can preserve evidence of early stages of tectonic shortening, ii) the recognition of which mechanisms assist deformation during these stages and iii) the identification of parameters that actually steer the beginning of localisation. To clarify these points, the thesis presents the results of an integrated, multiscale and multi-technique structural study that relied on field and laboratory data to analyse the structural, architectural, mineralogical and geochemical features that govern deformation during compressional tectonics. By focusing on two case studies, the Eastern Southern Alps (northern Italy), where deformation is mainly brittle, and the Oman Mountains (northeastern Oman), where ductile deformation dominates, the thesis shows that the deformation localisation is steered by several mechanisms that mutually interact at different stages during compression. At shallow crustal conditions, derived conceptual and numerical models show that both inherited (e.g., stratigraphic) and acquired (e.g., structural) features play a key role in steering deformation and differentiating the seismic behaviour of the multilayer succession. At the same time, at deeper crustal conditions, strain localises in narrow domains in which fluids, temperature, shear strain and pressure act together during the development of the internal fabric and the chemical composition of mylonitic shear zones, in which localisation took place under high-pressure (HP) and low-temperature (LT) conditions. In particular, results indicate that those shear zones acted as “sheltering structural capsules” in which peculiar processes can happen and where the results of these processes can be successively preserved even over hundreds of millions of years.

Computational design of a new type of sandwich cross-section for a defined solution of a tree-like column produced by wire-and-arc additive manufacturing

When it comes to designing a structure, architects and engineers want to join forces in order to create and build the most beautiful and efficient building. From finding new shapes and forms to optimizing the stability and the resistance, there is a constant link to be made between both professions. In architecture, there has always been a particular interest in creating new shapes and types of a structure inspired by many different fields, one of them being nature itself. In engineering, the selection of optimum has always dictated the way of thinking and designing structures. This mindset led through studies to the current best practices in construction. However, both disciplines were limited by the traditional manufacturing constraints at a certain point. Over the last decades, much progress was made from a technological point of view, allowing to go beyond today's manufacturing constraints. With the emergence of Wire-and-Arc Additive Manufacturing (WAAM) combined with Algorithmic-Aided Design (AAD), architects and engineers are offered new opportunities to merge architectural beauty and structural efficiency. Both technologies allow for exploring and building unusual and complex structural shapes in addition to a reduction of costs and environmental impacts. Through this study, the author wants to make use of previously mentioned technologies and assess their potential, first to design an aesthetically appreciated tree-like column with the idea of secondly proposing a new type of standardized and optimized sandwich cross-section to the construction industry. Parametric algorithms to model the dendriform column and the new sandwich cross-section are developed and presented in detail. A catalog draft of the latter and methods to establish it are then proposed and discussed. Finally, the buckling behavior of this latter is assessed considering standard steel and WAAM material properties.

Bio-QA-GNN: Reasoning with Language Models and Knowledge Graphs for Interpretable Biomedical Question Answering

Nowadays the idea of injecting world or domain-specific structured knowledge into pre-trained language models (PLMs) is becoming an increasingly popular approach for solving problems such as biases, hallucinations, huge architectural sizes, and explainability lack—critical for real-world natural language processing applications in sensitive fields like bioinformatics. One recent work that has garnered much attention in Neuro-symbolic AI is QA-GNN, an end-to-end model for multiple-choice open-domain question answering (MCOQA) tasks via interpretable text-graph reasoning. Unlike previous publications, QA-GNN mutually informs PLMs and graph neural networks (GNNs) on top of relevant facts retrieved from knowledge graphs (KGs). However, taking a more holistic view, existing PLM+KG contributions mainly consider commonsense benchmarks and ignore or shallowly analyze performances on biomedical datasets. This thesis start from a propose of a deep investigation of QA-GNN for biomedicine, comparing existing or brand-new PLMs, KGs, edge-aware GNNs, preprocessing techniques, and initialization strategies. By combining the insights emerged in DISI's research, we introduce Bio-QA-GNN that include a KG. Working with this part has led to an improvement in state-of-the-art of MCOQA model on biomedical/clinical text, largely outperforming the original one (+3.63\% accuracy on MedQA). Our findings also contribute to a better understanding of the explanation degree allowed by joint text-graph reasoning architectures and their effectiveness on different medical subjects and reasoning types. Codes, models, datasets, and demos to reproduce the results are freely available at: \url{https://github.com/disi-unibo-nlp/bio-qagnn}.