Population structure, long-term connectivity, and effective size of mutton snapper (Lutjanus analis) in the Caribbean Sea and Florida Keys

Genetic structure and average long-term connectivity and effective size of mutton snapper (Lutjanus analis) sampled from offshore localities in the U.S. Caribbean and the Florida Keys were assessed by using nuclear-encoded microsatellites and a fragment of mitochondrial DNA. No significant differences in allele, genotype (microsatellites), or haplotype (mtDNA) distributions were detected; tests of selective neutrality (mtDNA) were nonsignificant after Bonferroni correction. Heuristic estimates of average long-term rate of migration (proportion of migrant individuals/generation) between geographically adjacent localities varied from 0.0033 to 0.0054, indicating that local subpopulations could respond independently of environmental perturbations. Estimates of average longterm effective population sizes varied from 341 to 1066 and differed significantly among several of the localities. These results indicate that over time larval drift and interregional adult movement may not be sufficient to maintain population sustainability across the region and that there may be different demographic stocks at some of the localities studied. The estimate of long-term effective population size at the locality offshore of St. Croix was below the minimum threshold size considered necessary to maintain the equilibrium between the loss of adaptive genetic variance from genetic drift and its replacement by mutation. Genetic variability in mutton snapper likely is maintained at the intraregional level by aggregate spawning and random mating of local populations. This feature is perhaps ironic in that aggregate spawning also renders mutton snapper especially vulnerable to overexploitation.

Population connectivity among Dry Tortugas, Florida, and Caribbean populations of mutton snapper (Lutjanus analis), inferred from multiple microsatellite loci

Determining patterns of population connectivity is critical to the evaluation of marine reserves as recruitment sources for harvested populations. Mutton snapper (Lutjanus analis) is a good test case because the last known major spawning aggregation in U.S. waters was granted no-take status in the Tortugas South Ecological Reserve (TSER) in 2001. To evaluate the TSER population as a recruitment source, we genotyped mutton snapper from the Dry Tortugas, southeast Florida, and from three locations across the Caribbean at eight microsatellite loci. Both Fstatistics and individual-based Bayesian analyses indicated that genetic substructure was absent across the five populations. Genetic homogeneity of mutton snapper populations is consistent with its pelagic larval duration of 27 to 37 days and adult behavior of annual migrations to large spawning aggregations. Statistical power of future genetic assessments of mutton snapper population connectivity may benefit from more comprehensive geographic sampling, and perhaps from the development of less polymorphic DNA microsatellite loci. Research where alternative methods are used, such as the transgenerational marking of embryonic otoliths with barium stable isotopes, is also needed on this and other species with diverse life history characteristics to further evaluate the TSER as a recruitment source and to define corridors of population connectivity across the Caribbean and Florida.

Energetics and Structural Characterization of the large-scale Functional Motion of Adenylate Kinase

Adenylate Kinase (AK) is a signal transducing protein that regulates cellular energy homeostasis balancing between different conformations. An alteration of its activity can lead to severe pathologies such as heart failure, cancer and neurodegenerative diseases. A comprehensive elucidation of the large-scale conformational motions that rule the functional mechanism of this enzyme is of great value to guide rationally the development of new medications. Here using a metadynamics-based computational protocol we elucidate the thermodynamics and structural properties underlying the AK functional transitions. The free energy estimation of the conformational motions of the enzyme allows characterizing the sequence of events that regulate its action. We reveal the atomistic details of the most relevant enzyme states, identifying residues such as Arg119 and Lys13, which play a key role during the conformational transitions and represent druggable spots to design enzyme inhibitors. Our study offers tools that open new areas of investigation on large-scale motion in proteins.

Análise dos processos recentes de fragmentação e recomposição dos remanescentes florestais do estado do Rio de Janeiro

Ao longo de quase cinco anos de trabalho, foi desenvolvido o Índice de Qualidade dos Municípios - Verde, pela Fundação CIDE. O trabalho buscou retratar as características da fragmentação florestal fluminense. Como um elemento para apoiar a gestão ambiental do território, o projeto identificou corredores ecológicos prioritários para a interligação de fragmentos florestais. A grande contribuição do trabalho, do ponto de vista conceitual, foi reorientar o debate acerca da fragmentação florestal no Estado do Rio de Janeiro. O projeto IQM - Verde apresentou, exaustivamente, lugares onde ocorreram perdas e ganhos de estoques de vegetação com porte arbóreo, num recorte por municípios, bacias hidrográficas e Unidades de Conservação. Existem importantes questões que foram levantadas e ainda aguardam maiores e melhores respostas. Uma delas é tentar explicar, a partir da ecologia de paisagens, quais são os mecanismos que facilitam ou dificultam o processo natural de sucessão florestal. A situação da sucessão florestal é completamente diferente de uma região para outra do Estado. No Noroeste do Estado existem indícios claros de retração e fragmentação dos remanescentes enquanto na região Serrana do Sul Fluminense aparecem sinais claros de recuperação e recomposição florestal. Novos conceitos de gestão ambiental procuram minimizar os efeitos decorrentes da fragmentação e do isolamento espacial das espécies. O aumento da conectividade através de corredores ecológicos entre unidades de conservação e até mesmo entre os fragmentos mais bem conservados é apontado por muitos pesquisadores como uma das formas mais eficazes de promover a manutenção dos remanescentes florestais - a longo prazo - e até mesmo promover a recuperação funcional de determinadas unidades ecológicas atualmente ilhadas. A atual geração de pesquisadores e gestores públicos está diante do problema do controle dos processos que desencadeiam a fragmentação florestal. Portanto, é urgente a necessidade de entender todas as consequências associadas ao processo de fragmentação florestal e, ao mesmo tempo, descobrir os efeitos inibidores deste complexo fenômeno que possui raízes físicas, naturais e sociais. O objetivo central da tese é, a partir de elementos da História das Mentalidades e da Teoria da Decisão, construir cenários de pressão antrópica sobre os remanescentes florestais e propor um programa possível de intervenção econômica, jurídica e política, denominado no presente estudo como bolsa floresta, capaz de aliviar o atual processo de fragmentação florestal.