Population Parameters Based on Known Pedigree Records from Brazilian Jaffarabadi Buffaloes

The objective of this study was to evaluate the effective number of founders and ancestors, generation intervals and completeness of pedigree in Jaffarabadi breed buffaloes raised in Brazil. Pedigree records of 1,272 animals born from 1966 were used. The parameters were estimated using ENDOG, computational population genetic software. The obtained value for completeness of pedigree was 99.5, 50.9, and 20.5 for, the first, second and third generations, respectively. Generation interval estimates expressed in years and considering different pathways were 12.28 +/- 6.90 (sire-son), 11.55 +/- 6.07 (sire-daughter), 8.20 +/- 2.63 (dam-son) and 8.794 +/-.33 (dam-daughter). The overall average generation interval was 10.17 +/- 5.43 years. The number of founders, equivalent founders and ancestor animals that contributed for the genetic diversity in the reference population (1059) were 136, 130 and 134, respectively. Effective number of founder (f(e)=8) and ancestors (f(a)=7) were small, and the calculated expected inbreeding increase per generation was 4.99%. Four ancestors explained 50% of the genetic variability in the population and the major ancestor contributed with approximately 33% of the total population genetic variation. The genetic diversity within the current population is low as a consequence of a reduced number of ancestors.

Euterpe edulis Seedlings in the Understory of Two Forest Fragments

The palm Euterpe edulis is one of the most exploited due the intense illegal extraction, which is very harmful because this species dies right after the cutting process. This study aimed to assess the palms' development as an enrichment plant in a forest fragment belonging to a Preservation Area and the Biosphere Reserve of the Green Belt of Sao Paulo State, in Embu das Artes city. The seeds were obtained from the Instituto Florestal, which follows all the regulations for seeds, in order to get seedlings with a high genetic variation. The seedlings were planted in two successional stages: secondary forest with low trees (SFLT) and secondary forest with medium trees (SFMT). The seedlings survival and growth were periodically assessed and the results were compared by the variance analysis. Both areas presented high rates of survival, which were superior comparing to other similar studies with Euterpe edulis. Despite the successional difference between the areas, the development of the seedlings did not show significant difference on the analysis of variance regarding leaf number, height growth, stem diameter and survival, except for plant height at 60 days after planting, when seedlings planted in SFLT reached higher height (21.38 cm) than when planted in SFMT (19.31 cm).

Variação, herdabilidade e ganhos genéticos em progênies de Eucalyptus tereticornis aos 25 anos de idade em Batatais-SP

The wood of Eucalyptus tereticornis is intensively used for timber, structures, buildings, poles, posts and coal. The aim of this study was to estimate genetic parameters and genetic and phenotypic correlations in growth and stem form traits of 52 open-pollinated progenies of E. tereticornis sampled from three Australian populations (20 progenies from Helenvale, 19 from Ravenshoe and 13 from Mt. Garnet). The progenies were compared with three commercial control also from Australian. The experimental design used was the compact family block, with the effect of provenance allocated in the plots and progenies within provenances in the subplots. Ten repetitions of the 52 treatments, sub-plots with six plants and the spacing of 3 x 2 m was used. At 25 years of age it was measured the diameter at breast height (DBH), total height, true volume and the stem form. We found genetic variation amon and within the three provenances and the possibility of obtaining high gains from mass selection and individual among and within progenies. The provenance Helenvale showed the best development for DBH, height and volume. The traits DBH, height and volume showed high genetic correlations (> 0.9), indicating the possibility to use the indirect selection. The coefficient of heritability on a progeny mean for the traits DBH and height was median, being 0.31 and 0.30, respectively. The expected genetic gain with the selection were estimated at 12.4% for DBH and 8.5 % for plant height. These results will subsidize the transformation of the provenance and progeny test in a seedling seed orchard and a clonal seed orchard.

Diagnostic tests for hepatitis C: Recent trends in electrochemical immunosensor and genosensor analysis

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Enfermidades genéticas com mutações caracterizadas em bovinos

The genetic inheritance, beyond determining the regular features of all the live beings, can also be the cause of diseases, called as hereditary or genetic diseases. In the case of livestock, especially cattle, little genetic variation, by the use of the same sires for a long time, can facilitate the emergence of problems. In this study, we reviewed eight of the most important genetic diseases in cattle herds around the world, whose mutation has already been characterized. Some of these diseases are reported in Brazil, but there are few studies and articles on this subject, due to the difficulty of a definitive diagnosis, which often is only possible with the use of molecular biology techniques. The knowledge of the disorders and the correct diagnosis are essential to initiate an action plan aimed at eradicating them

Phylogeography of the freshwater red alga Sirodotia (Batrachospermales, Rhodophyta) in Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Seleção de progênies de Myracrodruon urundeuva (F.F. & M.F. Allemão) baseada em caracteres fenológicos e de crescimento para reconstituição de áreas de reserva legal

Pós-graduação em Agronomia - FEIS

Produtividade, estabilidade e adaptabilidade em progênies de Myracrodruon urundeuva F.F. & M.F. Allemão – Anacardiaceae

The use and inadequate exploitation of natural resources is restricting the occurrence of aroeira (Myracrodruon urundeuva F.F. & M.F. Allemão), which now is on the FAO list of endangered species. This exploitation causes a decrease in the genetic base of M. urundeuva populations, which makes it difficult to find genotypes with stability and adaptability to different growing conditions. This study aimed at estimating the genetic variation and productivity, stability and adaptability of progenies of a M. urundeuva natural population, from the Ecological Station of Paulo de Faria-SP, under different planting systems. DBH (diameter at breast height) was evaluated in four progeny tests of M. urundeuva: i) planted with Anandenanthera falcata and Guazuma ulmifolia (TP-AMA); ii) single (TP-ASO); iii) planted with annual crops (TP-SAF) and iv) planted with Corymbia citriodora (TP-EUCA), installed in Selvíria-MS. The experimental design consisted of complete randomized blocks with three replications and a variable number of plants per plot in each of the four planting systems. From the joint analysis of the planting systems studied, it was found that: i) there were variations among planting systems particularly in TP-SAF; ii) only in TP-EUCA it was possible to detect variations among the progenies; iii) the effects of the genotype x environment interaction were not significant. Thereby, the harmonic mean of genotypic values (MHVG), the relative performance of genotypic values from the mean of each site (PRVG) and the harmonic mean of the relative performance of genotypic values (MHPRVG) for DBH showed, respectively: progenies with greater stability, adaptability, and stability and simultaneous adaptability within different planting systems. The use of these selection criteria provided a more refined selection of the best progenies of M. urundeuva under the different planting systems studied.

Heritability of Growth traits in fragmented popularions of Copaifera langsdorffii Desf. (Fabaceae)

The aim of this study is to investigate the genetic control of growth traits in the initial phases of development in fragmented populations of Copaifera langsdorffii Desf., using microsatellite markers. For the effect two populations of C. langsdorffii were used: a municipal park located in Sao Jose do Rio Preto (SJRP) and at Assis Ecological Station (AES), both in the state of sao Paulo, Brazil. The model to estimate the heritability coefficient is the method of regression of a measure of phenotypic similarity and an estimate of kinship between paired individuals. The coefficients of relatedness and heritability were estimated for three classes of distance (10, 20 and 30 m) within populations. Estimates of heritability were low (maximum 0.15) for all traits, ranging from positive values for regenerating individuals of the population SJRP and from negative to positive for the juvenile population AES. In evolutionary terms, these results indicate little chance of changing the population mean of the characters studied by natural selection; with strong random environmental effects changing this average. The results also suggest that the heritability for height to decrease between regenerating to juvenile stage and the natural selection in natural populations is stronger in the early stages of plant development.

Gene polymorphisms and increased DNA damage in morbidly obese women

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Genotypic characterization of ten microsatellite loci in two Brazilian free range (Caipira) chicken lines

This study aimed to investigate the genetic variability of two Brazilian free range (Caipira) chickens lines using microsatellites analysis of ten loci. It was collected a total of 99 blood samples, which 49 were from Paraiso Pedres (PP) and 50 were from Rubro Negra (RN) lines. The amplification of the DNA fragments was performed by polymerase chain reaction (PCR) and the genotyping was conduct using ABI 3130 sequencer. The allele number variation was among 3 (LEI0254) to 32 (LEI0212) in the PP line, and 4 (LEI0254) to 31 (LEI0212) in the RN line. The allelic average per locus was 13.3 and 13.1 in the PP and RN lines, respectively. The average observed and the expected heterozygosity were 0.650 and 0.820 in the PP line, and 0.671 and 0.804 in the RN line. All of the analyzed loci were informative (PIC>0.5). These results indicate that these free-range animals have a high genetic variability, at least for the majority of the analyzed loci, and this genetic variation is higher than the commercial chickens and similar for the no-commercial birds.

Molecular characterization of intestinal protozoa in two poor communities in the State of São Paulo, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Random regression models for milk, fat and protein in Colombian Buffaloes

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Productivity, stability and adaptability in open pollination progenies of Eucalyptus urophylla ST Blake

Prediction of genetic gains within breeding programs is not always compatible with those observed in practice. One reason for this inconsistency is the lack of knowledge of genotype-environment interaction (GxE). The aim of this study was to estimate genetic variation, evaluate the GxE, investigate the genetic correlation between pairs of environments and for the set, and to study the productivity, stability and adaptability at 2 years of age for diameter at breast height (DBH) in five progenies trials of Eucalyptus urophylla, used in a randomized complete block design, with the number of progenies ranging from 138 to 167, four to eight blocks and five to six plants per plot. Estimates of variance components and genetic parameters were obtained using the REML/BLUP method. For analysis of productivity, stability and adaptability, the HMRPGV method was used. The highest DBH growth was observed in Anhembi (10.52 cm) and Uberaba (10.20 cm). Estimates considered high were obtained for the coefficient of individual additive genetic variation (>13.3%) and average heritability among progenies (>0.40), indicating the possibility of obtaining genetic gains by selection among progenies. The coefficient of determination of the GxE was 1.7%, a fact that led to a high value of genotypic correlation between the performance of the progenies and environments (78.1%), indicating that the interaction is simple. The first six progenies showed a coincidence of 100% in the order of stability (HMGV), adaptability (RPGV) and productivity (HMRPGV), being 13% higher than the overall mean of five experiments (9.21 cm). When ordering the progenies, the selection of the 20 best in growth led to an increase in gain ranging of from 10.4 to 70%. Anhembi is the ideal place to have a breeding population which will be good in the other places as well.

Distribution, management and diversity of the endangered Amerindian yam (Dioscorea trifida L.)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)