南海北部区域表层水微生物多样性及其分布特点研究

海洋中的微生物多样性是十分丰富的。南海北部区域表层水的微生物群落结构及物种多样性情况仍不十分清楚。本研究，采用构建基因克隆文库的方法，对该区域内表层水中的微生物多样性及分布特点进行研究。获得了8000多个细菌16S rDNA基因、真核微生物ITS 区基因及光合微型生物 psbA 基因单克隆。本研究结果表明：在南海北部区域表层水中存在两种不同微生物类群，即近海岸带海洋微生物类群和开阔海域海洋微生物类群。 16S rDNA基因克隆文库中，确定了507个OTUs。93.7% 的16S rDNA 序列定义在同一种水平上，1.4 %的16S rDNA序列定义在同一属的水平上，2.7%的16S rDNA序列定义在同一纲的水平上，1.2%的16S rDNA序列定义在同一门的水平上。值得一提的是有0.7%的南海表层水样品的16S rDNA 序列，属于目前数据库中的未知序列。系统育树分析表明这类序列可归属于4个不同的分枝群。与Venter’s Sorcerer II 海洋科考（马尾岛海域）的结果不同，南海北部区域表层水中，并没有发现SAR11分支细菌、丝状杆菌（Fibrobacter）和Rheinheimera细菌序列，但南海北部区域却发现了马尾岛海域未检测到的物种，如酸杆菌门、恐球菌-栖热菌门、厚壁菌门，硝化螺旋菌门，浮霉菌门以及疣微菌类细菌。除疣微菌外，其他5种细菌都是海洋环境样品中较为常见的细菌。变形菌门、蓝细菌及厚壁菌门细菌序列是南海北部表层样品16S rDNA基因克隆文库中的主要类群。 真核生物如浮游植物和海洋真菌是海洋表面生物质的主要组成部分之一。现有的研究多集中在环境样品的原核微生物的群落结构研究上，很少关注海洋微型真核生物的多样性及群落结构分布。本研究通过构建ITS基因克隆文库的方法，得到了3044条ITS序列，最终定义了1288个OTUs。其中，329个OTUs序列定义在同一种水平上，310个OTUs序列定义在同一属或纲的水平上，123个OTUs序列定义在同一门的水平上。值得注意的是有339个OTUs的序列，属于目前数据库中的未知序列。系统发育树分析表明它们分别归属于4个不同的分枝群。这表明以往对海洋真核微型生物的多样性仍知之甚少。盘菌亚门、体腔动物门和担子菌纲是南海北部表层样品ITS基因克隆文库中的主要类群。此外，在南海北部区域还发现了少数归属于绿藻、链形植物、定鞭金藻类、放射虫类、Stramenopiles、Typhlocoela、壶菌类、多孢囊霉目、子囊菌门、地位未定的物种、 酵母、领鞭毛虫门、不可培养的后生动物和海绵动物的ITS序列。 海洋初级生产力主要是依靠光合微型浮游生物进行光合作用完成的。利用新设计的psbA通用引物，对南海北部33个表层水样滤膜进行基因克隆文库建库分析，最终获得了南海北部区域表层水微生物多样性及其分布特点研究3062条部分psbA基因序列，并将其划分为957个 OTUs。其中蓝细菌和未培养的病毒序列在psbA基因库中的数量最多。本研究还发现了南海北部区域存在11个独立分支的新型psbA类群。研究证实psbA基因可以作为一种研究海洋光合微型浮游生物群落结构的指示基因。 克隆文库相似性分析发现，在所有的16S rDNA克隆文库中没有任意两个站点的克隆文库相似性超过50%。虽然N401和N420站点的16S rDNA克隆文库相似性最大，但它们在地理位置上并不接近。一些地理位置接近的站点，其16S rDNA克隆文库之间相似性比较接近。比如，海南岛区域的克隆文库之间就比较相似，且在同一分支。大多数地理环境相似的站点的16S rDNA克隆文库都聚在同一大分支上。例如，来自于珠江口区域站点的克隆文库之间的相似性比较接近，而且分布在一个大分支中；开阔海洋区域的16S rDNA克隆文库，也大多聚类在同一分支中。但也有例外的情况：比如 N107 和N400 站点的16S rDNA克隆文库，就聚类到一起，分析发现这两个文库中所处的环境都是甲烷产生区，其中都含有相似的与甲烷代谢相关的菌群。不过从整体来看，整个南海北部的细菌群落，大致分为两大类：中国大陆近海岸微生物群落和开阔海域微生物群落。33个ITS克隆文库的相似性分析发现：相似性在10%以下的类群，可以分成两大分支，而且该分类，比细菌群落的分布情况更接近南海北部的地理环境特征。对psbA基因克隆文库的相似性分析也验证了在南海北部区域表层水中存在两种不同微生物生态系统。 此外，本研究针对分子生态专业软件DOTUR程序在处理大量克隆文库数据时所遇到的

A new protein structure of P-II class snake venom metalloproteinases: it comprises metalloproteinase and disintegrin domains

A new metalloproteinase-disintegrin, named Jerdonitin, was purified from Trimeresurus jerdonii venom with a molecular weight of 36 kDa on SDS-PAGE. It dose-dependently inhibited ADP-induced human platelet aggregation with IC50 of 120 nM. cDNA cloning and sequencing revealed that Jerdonitin belonged to the class II of snake venom metalloproteinases (SVMPs) (P-II class). Different from other P-II class SVMPs, metalloproteinase and disintegrin domains of its natural protein were not separated, confirmed by internal peptide sequencing. Compared to other P-II class SVMPs, Jerdonitin has two additional cysteines (Cys219 and Cys238) located in the spacer domain and disintegrin domain, respectively. They probably form a disulfide bond and therefore the metalloproteinase and disintegrin domains cannot be separated by posttranslationally processing. In summary, comparison of the amino acid sequences of Jerdonitin with those of other P-II class SVMPs by sequence alignment and phylogenetic analysis, in conjunction with natural protein structure data, suggested that it was a new type of P-II class SVMPs. (C) 2003 Elsevier Inc. All rights reserved.

Input-output relationship and economics of pangas monoculture and carp-pangas polyculture in two districts of Bangladesh

An attempt was made to study the input-output relationships and economics of pangas monoculture and carp-pangas polyculture in Bangladesh. By analyzing the data collected from 50 pangas farms and 55 carp-pangas farms, the study has investigated the production systems of two technologies and the effects of fingerling stocking and applications of feed and fertilizer on fisheries income. The data were collected from the fishermen of Trishal and Bhaluka of Mymensingh district, and Kahaloo and Adamdighee of Bogra district during 2001-02. For pangas monoculture, the stocking density was 31,561 per ha while it was 55,017 per ha in carp-pangas polyculture. Most of the farmers used urea, TSP and lime before stocking. Rice and wheat bran happened to be the most common feed ingredients for both types of culture in general. Other important ingredients used were mustard oil-cakes, rice polish, wheat flour, fish meal, bone meal, soybean meal and poultry litter. In terms of quantities, rice bran and wheat bran dominated the farmers list. Rice and wheat bran together constituted about 60% of all studied feeds. Feed cost constituted 59.13% of total costs for pangas monoculture and 67.44% for carp-pangas polyculture. Per ha productions of pangas and carp-pangas in a single culture cycle were 15,508 kg and 19,745 kg, respectively. Per ha gross profits were estimated to be Tk 310,311 and Tk 464,418 for pangas monoculture and carp-pangas polyculture, respectively. Net profit appeared to be Tk 264,216 per ha for pangas monoculture and Tk 416,509 per ha for carp-pangas polyculture. The BCRs calculated were 1.46 and 1.68 for monoculture and polyculture, respectively. The break-even costs per kg of fish were estimated at Tk 36.93 for pangas and Tk 30.93 for mixed species which was much lower than the prices the producers received. Break-even productions were estimated at 10,702 kg per ha for pangas monoculture and 11,784 kg per ha for carp-pangas polyculture. Fingerling and feed cost, and pond size significantly explained the variation of income from pangas monoculture. These factors have significantly influenced the income from the crop. Functional analysis shows that 1% increase in the feed cost might increase 0.51% of pangas income and 0.41% in carp-pangas income. No other inputs had shown this much of responses to increasing income from a fish.

Species diversity of the subgenus Amiota (s. str.) Loew, 1862 (Diptera, Drosophilidae) in southern China

A total of 38 Amiota (s. str.) species (about 40% of the world total) are reported from southern China, with descriptions of 23 new species, i.e. sinuata species-group: aculeata Chen and Aotsuka, sp. nov., subsinuata Chen and Aotsuka, sp. nov., xishuangbanna Chen and Aotsuka, sp. nov.; basdeni species-group: brevipartita Chen and Gao, sp. nov., curvispina Chen and Gao, sp. nov., lipingae Chen and Gao, sp. nov., huae Chen and Gao, sp. nov., longispina Chen and Gao, sp. nov.; taurusata species-group: asymmetrica Chen and Takamori, sp. nov.; femorata Chen and Takamori, sp. nov., yixiangensis Chen and Takamori, sp. nov.; alboguttata species-group: ailaoshanensis Chen and Watabe, sp. nov., arcuata Chen and Watabe, sp. nov., dehiscentia Chen and Watabe, sp. nov., jizushanensis Chen and Watabe, sp. nov., latitabula Chen and Watabe, sp. nov., luguhuensis Chen and Watabe, sp. nov., nozawai Chen and Watabe, sp. nov., paraspinata Chen and Watabe, sp. nov., shangrila Chen and Watabe, sp. nov.; and ungrouped: fuscicata Chen and Zhang, sp. nov., wangi Chen and Zhang, sp. nov., wuyishanensis Chen and Zhang, sp. nov. A key to all species from southern China is provided. The Amiota fauna of southern China at the species-group level is compared with that of six geographic regions. The subgenus Amiota is assumed to have originated and produced many species-groups in the Oriental region of East Asia, and then the basdeni, alboguttata and rufescens species-groups might have spread to Europe and North-Central America throughout the Palearctic region of East Asia and both the apodemata, sinuata and nagatai species-groups to tropical regions of South-East Asia.

Year-round and rotational freshwater prawn, Macrobrachium rosenbergii and paddy farming: soil quality, production and economics

A study was carried out at five upazillas (Dumuria, Fakirhat, Pirojpur sadar, Gopalgonj sadar and Kalia) of five southern districts of Khulna, Bagerhat, Pirojpur, Gopalgonj and Narail to understand the comparative production performance and any effect on soil quality in case of year-round golda (Macrobrachium rosenbergii), alternate prawn-paddy and year-round paddy farming. A direct interview of 55 farmers was taken, using pretested questionnaire, and soil samples were taken from selected farms before and after each crop. Among the five upazillas, farmers in Gopalgonj sadar and Kalia are not practicing year-round golda. Rotational golda-paddy farming has been recorded to result in maximum profit, with the highest of Tk. 310,912/ha/year in 2003 at Dumuria. Only paddy farming is less profitable than other two cropping patterns, irrespective of study sites. The nutrient status of soil in rotational golda and paddy farming has been found improved, compared to that of only golda or paddy farming.

Investigation on water quality in the Ashulia beel, Dhaka

The study was conducted to get an idea about the water quality of the Ashulia beel, and its temporal change over wet and dry seasons due to change of the physicochemical parameters. The water body has become a dumping ground of all kinds of solid, liquid and chemical wastes of bank side population and industries. Encroachment and illegal dredging has become a serious threat for the sound environment of the beel. The water parameters of pH 7.1-7.8 and alkalinity 30-63 mg/l in wet, and pH 7.1-8.4 and alkalinity 90-115 mg/l in dry season, respectively, which were within the standard range of DoE investigation. During wet season, EC 130-310 mg/l, TDS 80-132 mg/l, DO 1.1-2.1 mg/l and BOD -4.4-1.6 mg/l were measured. In dry season, EC 341-442 mg/l, TDS 207-276 mg/l, DO 0.5-2.0 mg/l and BOD 1.0-3.0 mg/l were measured. The comparative analysis showed that most of the water quality parameters of the Ashulia beel were suitable for aquatic organisms including fishes while the DO contents were much lower than the desirable level which may not be suitable for fishes.

慢性吗啡给予、戒断及再给药过程中大鼠海马感觉门控的动态变化

药物成瘾被认为是药物长期作用于脑而产生的一种慢性复吸性脑疾病,长期反复的药物(如吗啡)滥用会导致一系列严重后果,如药物依赖、药物耐受、强迫性药物寻求等.本实验利用条件化位置偏好(conditioned place preference,CPP)模型来检测大鼠对吗啡依赖和心理渴求等过程;采用双声刺激听觉诱发电位来研究大鼠在慢性吗啡给予、戒断以及再给药过程中海马感觉门控(N40)的动态变化.吗啡组大鼠注射吗啡(10mg/kg,i.p.)12d,经历第一次戒断12d,再次注射吗啡(2.5mg/kg,i.p.)1d,之后经历第二次戒断2d;对照组大鼠注射同体积生理盐水,其余实验条件与吗啡组相同.CPP实验表明,这种药物给予方法促使大鼠对吗啡产生药物依赖和心理渴求.双声刺激诱发电位实验表明,吗啡组大鼠在吗啡给予期间海马感觉门控受到损伤;第一次戒断期的第1～2天海马感觉门控能力减弱,第3天增强,第4～12天逐渐恢复到正常水平;再次给予吗啡后海马感觉门控能力与对照组相比显著降低,并且随后2d的戒断期内海马感觉门控能力也一直保持较低水平,表明再次给药使大鼠海马感觉门控对吗啡更加敏感化.结果提示,长期反复的吗啡给予及再给药干扰了海马的感觉门控能力,吗啡成瘾对大脑可能产生长期影响.

不同渗透压的稀释液对猕猴精子低温冷冻保存的影响

以稀释液TTE (382 mOsm/ kg) 为对照, 研究了5 种渗透压(688 、389 、329 、166 、43 mOsm/ kg) 的TEST 稀释液(TEST、mTEST1、mTEST2、mTEST3、mTEST4) 在冷冻过程中对猕猴精子功能的影响。精液一 步稀释于含甘油的防冻液中, 甘油的终浓度为5 % (v/ v) 。在冷冻前后分别检测精子的运动度和质膜完整性, 后者用Hoechst 33342 和碘化丙锭双色标记流式细胞术分析。结果表明: 冷冻之前, 与鲜精相比, 用TEST 和 mTEST4 稀释的精子运动度和质膜完整性显著降低( P < 01001) , 其余组中除mTEST2 稀释的精子质膜完整性显 著降低( P < 0105) 外, 精子运动度无差异; 冷冻复苏后, TTE、mTEST3 和mTEST1 冻存精子的运动度和质膜 完整性最高, 其次是mTEST2 , TEST和mTEST4 冷冻效果最差( P < 0105) 。提示等渗、适当高渗或低渗的稀释 液适合猕猴精子的冷冻保存; 对精子产生高渗毒害作用是导致猕猴精子用TEST 冷冻存活率低的主要原因。

云南新平哀牢山夜间捕获鸟类的多样性

2007-09-05-2007-11-05和2008-09-03-2008-11-07期间,在云南省新平县哀牢山金山丫口用灯光诱捕对秋季夜间迁徙鸟类组成进行了调查.共捕获鸟类129种,7943只,分属于14日23科.雀形目鸟类为网捕主要鸟类,占总网捕数量的58.9%.其中红尾伯劳(Lanius cristatus)、小杜鹃(Cuculus poliocephalus)和红喉歌鸲(Luscinia calliope)3种是该地夜间网捕优势种鸟类,三者数量皆超过网捕岛类总数的5%.每天夜间20:00-22:00和次日凌晨04:00-4)6:00是捕获鸟类数最的高峰时段.网捕期间,早期Shannon-Wiener指数和Pielou指数最低,优势指数C最高;中期Shannon-Wiener指数和Pielou指数最高,优势度指数C最低.2008与2007年相比,优势指数C和G-F指数较低.但Shannon-Wiener指数和Pielou指数较高.云南省不同"打雀山"仪问捕获鸟类的种类和数量存在差异.地理和气候可能是造成这些差异的主要因素.

独龙江中下游流域的鱼类区系

独龙江流域位于云南省的西北部,北与青藏高原相连,西与缅甸毗邻.中国科学院昆明动物研究所于2004年10月~11月对该水域鱼类资源进行了具体调查,共计采集到鱼类标本883号,分别属于鲤形目、鲇形目;裂腹鱼亚科、野鲮亚科、鮡科;共2目、3科(亚科)、6属、7种.对独龙江鱼类区系与其相邻水系的鱼类区系进行比较分析,认为独龙江水系的鱼类区系与怒江水系的鱼类区系有着更近的渊缘关系.

New insights into the karyotypic relationships of Chinese muntjac (Muntiacus reevesi), forest musk deer (Moschus berezovskii) and gayal (Bos frontalis)

To investigate the karyotypic relationships between Chinese muntjac (Muntiacus reevesi), forest musk deer (Moschus berezovskii) and gayal (Bos frontalis), a complete set of Chinese muntjac chromosome-specific painting probes has been assigned to G-banded chromosomes of these three species. Sixteen autosomal probes (i.e. 6-10, 12-22) of the Chinese muntjac each delineated one pair of conserved segments in the forest musk deer and gayal, respectively. The remaining six autosomal probes (1-5, and 11) each delineated two to five pairs of conserved segments. In total, the 22 autosomal painting probes of Chinese muntjac delineated 33 and 34 conserved chromosomal segments in the genomes of forest musk deer and gayal, respectively. The combined analysis of comparative chromosome painting and G-band comparison reveals that most interspecific homologous segments show a high degree of conservation in G-banding patterns. Eleven chromosome fissions and five chromosome fusions differentiate the karyotypes of Chinese muntjac and forest musk deer; twelve chromosome fissions and six fusions are required to convert the Chinese muntjac karyotype to that of gayal; one chromosome fission and one fusion separate the forest musk deer and gayal. The musk deer has retained a highly conserved karyotype that closely resembles the proposed ancestral pecoran karyotype but shares none of the rearrangements characteristic for the Cervidae and Bovidae. Our results substantiate that chromosomes 1-5 and 11 of Chinese muntjac originated through exclusive centromere-to-telomere fusions of ancestral acrocentric chromosomes. Copyright (C) 2005 S. Karger AG, Basel.