Characteristics of water exchange in the Luzon Strait during September 2006

The Luzon Strait is the only deep channel that connects the South China Sea (SCS) with the Pacific. The transport through the Luzon Strait is an important process influencing the circulation, heat and water budgets of the SCS. Early observations have suggested that water enters the SCS in winter but water inflow or outflow in summer is quite controversial. On the basis of hydrographic measurements from CTD along 120 degrees E in the Luzon Strait during the period from September 18 to 20 in 2006, the characteristics of temperature, salinity and density distributions are analyzed. The velocity and volume transport through the Luzon Strait are calculated using the method of dynamic calculation. The major observed results show that water exchanges are mainly from the Pacific to the South China Sea in the upper layer, and the flow is relatively weak and eastward in the deeper layer. The net volume transport of the Luzon Strait during the observation period is westward, amounts to about 3.25 Sv. This result is consistent with historical observations.

中国近海和西北太平洋温跃层时空变化分析、模拟及预报

温度跃层是反映海洋温度场的重要物理特性指标，对水下通讯、潜艇活动及渔业养殖、捕捞等有重要影响。本文利用中国科学院海洋研究所“中国海洋科学数据库”在中国近海及西北太平洋（110ºE-140ºE,10ºN-40ºN）的多年历史资料（1930-2002年，510143站次），基于一种改进的温跃层判定方法，分析了该海域温跃层特征量的时空分布状况。同时利用Princeton Ocean Model(POM)，对中国近海，特别是东南沿海的水文结构进行了模拟，研究了海洋水文环境对逆温跃层的影响。最后根据历史海温观测资料，利用EOF分解统计技术，提出了一种适于我国近海及毗邻海域，基于现场有限层实测海温数据，快速重构海洋水温垂直结构的统计预报方法，以达到对现场温跃层的快速估计。 历史资料分析结果表明，受太阳辐射和风应力的影响，20°N以北研究海域，温跃层季节变化明显，夏季温跃层最浅、最强，冬季相反，温跃层厚度的相位明显滞后于其他变量，其在春季最薄、秋季最厚。12月份到翌年3月份，渤、黄及东海西岸，呈无跃层结构，西北太平洋部分海域从1月到3月份，也基本无跃层结构。在黄海西和东岸以及台湾海峡附近的浅滩海域，由于风力搅拌和潮混合作用，温跃层出现概率常年较低。夏季，海水层化现象在近海陆架海域得到了加强，陆架海域温跃层强度季节性变化幅度(0.31°C/m)明显大于深水区(约0.05°C/m)，而前者温跃层深度和厚度的季节性变化幅度小于后者。20°N以南研究海域，温跃层季节变化不明显。逆温跃层主要出现在冬、春季节（10月-翌年5月）。受长江冲淡水和台湾暖流的影响，东南沿海区域逆温跃层持续时间最长，出现概率最大，而在山东半岛北及东沿岸、朝鲜半岛西及北岸，逆温跃层消长过程似乎和黄海暖流有关。多温跃层结构常年出现于北赤道流及对马暖流区。在黑潮入侵黄、东、南海的区域，多温跃层呈现明显不同的季节变化。在黄海中部，春季多温跃层发生概率高于夏季和秋季，在东海西部，多跃层主要出现在夏季，在南海北部，冬季和春季多温跃层发生概率大于夏季和秋季。这些变化可能主要受海表面温度变化和风力驱动的表层流的影响。 利用Princeton Ocean Model(POM)，对中国东南沿海逆温跃层结构进行了模拟，模拟结果显示，长江冲淡水的季节性变化以及夏季转向与实际结果符合较好，基本再现了渤、黄、东海海域主要的环流、温盐场以及逆温跃层的分布特征和季节变化。通过数值实验发现，若无长江、黄河淡水输入，则在整个研究海域基本无逆温跃层出现，因此陆源淡水可能是河口附近逆温跃层出现的基本因素之一。长江以及暖流（黑潮和台湾暖流）流量的增加，均可在不同程度上使逆温跃层出现概率及强度、深度和厚度增加，且暖流的影响更加明显。长江对东南沿海逆温跃层的出现，特别是秋季到冬季初期，有明显的影响，使长江口海域逆温跃层位置偏向东南。暖流对于中国东南沿海的逆温跃层结构，特别是初春时期，有较大影响，使长江口海域的逆温跃层位置向东北偏移。 通过对温跃层长期变化分析得出，黄海冷水团区域，夏季温跃层强度存在3.8年左右的年际变化及18.9年左右的年代际变化，此变化可能主要表现为对当年夏季和前冬东亚地区大气气温的热力响应。东海冷涡区域，夏季温跃层强度存在3.7年的年际变化，在El Nino年为正的强度异常，其可能主要受局地气旋式大气环流变异所影响。谱分析同时表明，该海域夏季温跃层强度还存在33.2年的年代际变化，上世纪70年代中期，温跃层强度由弱转强，而此变化可能与黑潮流量的年代际变化有关。 海洋水温垂直结构的统计预报结果显示，EOF分解的前四个主分量即能够解释原空间点温度距平总方差的95%以上，以海洋表层附近观测资料求解的特征系数推断温度垂直结构分布的结果最稳定。利用东海陆架区、南海深水区和台湾周边海域三个不同区域的实测CTD样本廓线资料，对重构模型的检验结果表明，重构与实测廓线的相关程度超过95%的置信水平。三个区重构与实测温度廓线值的平均误差分别为0.69℃，0.52℃，1.18℃，平均重构廓线误差小于平均气候偏差，统计模式可以很好的估算温度廓线垂直结构。东海陆架海区温度垂直重构廓线与CTD观测廓线获得的温跃层结果对比表明，重构温跃层上界、下界深度和强度的平均绝对误差分别为1.51m、1.36m和0.17℃/m，它们的平均相对误差分别为24.7%、8.9%和22.6%，虽然温跃层深度和强度的平均相对误差较大，但其绝对误差量值较小。而在南海海区，模型重构温跃层上界、下界和强度的平均绝对预报误差分别为4.1m、27.7m和0.007℃/m，它们的平均相对误差分别为16.1%、16.8%和9.5%，重构温跃层各特征值的平均相对误差都在20%以内。虽然南海区温跃层下界深度平均绝对预报误差较大，但相对于温跃层下界深度的空间尺度变化而言（平均温跃层下界深度为168m），平均相对误差仅为16.8%。因此说模型重构的温度廓线可以达到对我国陆架海域、深水区温跃层的较好估算。 基于对历史水文温度廓线观测资料的分析及自主温跃层统计预报模型，研制了实时可利用微机简单、快捷地进行温跃层估算及查询的可视化系统，这是迄今进行大范围海域温跃层统计与实时预报研究的较系统成果。

PRINCIPAIS INDICADORES: AGRÍCOLAS, v. 3, n. 27, 2010.

2010

PRINCIPAIS INDICADORES: LEITE E DERIVADOS, v. 3, n. 27, 2010.

2010

PRINCIPAIS INDICADORES: MACROECONÔMICOS, v. 3, n. 27, 2010.

2010

Post card to George Whitaker 06/27/1881

Postal card to George Whitaker. Mailed from Ocean Grove, NJ. Dated June 27, 1881.

Development and psychometric evaluation of the spirituality instrument (SpI-27) in a sample of people with chronic illness

Background: Spirituality is fundamental to all human beings, existing within a person, and developing until death. This research sought to operationalise spirituality in a sample of individuals with chronic illness. A review of the conceptual literature identified three dimensions of spirituality: connectedness, transcendence, and meaning in life. A review of the empirical literature identified one instrument that measures the three dimensions together. Yet, recent appraisals of this instrument highlighted issues with item formulation and limited evidence of reliability and validity. Aim: The aim of this research was to develop a theoretically-grounded instrument to measure spirituality – the Spirituality Instrument-27 (SpI-27). A secondary aim was to psychometrically evaluate this instrument in a sample of individuals with chronic illness (n=249). Methods: A two-phase design was adopted. Phase one consisted of the development of the SpI-27 based on item generation from a concept analysis, a literature review, and an instrument appraisal. The second phase established the psychometric properties of the instrument and included: a qualitative descriptive design to establish content validity; a pilot study to evaluate the mode of administration; and a descriptive correlational design to assess the instrument’s reliability and validity. Data were analysed using SPSS (Version 18). Results: Results of exploratory factor analysis concluded a final five-factor solution with 27 items. These five factors were labelled: Connectedness with Others, Self-Transcendence, Self-Cognisance, Conservationism, and Connectedness with a Higher Power. Cronbach’s alpha coefficients ranged from 0.823 to 0.911 for the five factors, and 0.904 for the overall scale, indicating high internal consistency. Paired-sample t-tests, intra-class correlations, and weighted kappa values supported the temporal stability of the instrument over 2 weeks. A significant positive correlation was found between the SpI-27 and the Spirituality Index of Well-Being, providing evidence for convergent validity. Conclusion: This research addresses a call for a theoretically-grounded instrument to measure spirituality.

Evaluation of HER2, p53, bcl-2, topoisomerase II-alpha, heat shock proteins 27 and 70 in primary breast cancer and metastatic ipsilateral axillary lymph nodes.

BACKGROUND: Breast cancer is a heterogeneous disease. Predictive biological markers (BM) of responsiveness to therapy need to be identified. Evaluation of BM is mainly done at the primary site. However, in the adjuvant therapy of breast cancer, the main goal is control of micrometastases. It is still unknown whether heterogeneity in the expression of BM between the primary site and its micrometastases exists. OBJECTIVE: To evaluate the expression of some BM with potential predictive value from the primary breast cancer site and metastatic ipsilateral axillary lymph nodes. PATIENTS AND METHODS: Focality (percentage of positive cells) and intensity staining scores were evaluated for each marker. Freshly cut sections (4 microm) from embedded blocks of breast cancer fixed in formalin or bouin were put onto superfrost slides (Menzel-Gläser). Protein expression was evaluated immunohistochemically (IHC) using monoclonal antibodies against: topo II-alpha (clone KiS1, 1 microg/ml, Roche) with a trypsine pre-treatment (P); HSP27 (clone G3.1, 1/60, Biogenex), HSP70 (clone BRM.22, 1/80, Biogenex) and HER2 (clone CB11, 1/40, Novocastra; without P); p53 (clone D07, 1/750, Dako) and bcl-2 (clone 124, 1/60, Dako) with citrate buffer as P. RESULTS: Overall, the percentage of discordant marker status in the primary tumour and its metastatic lymph nodes was 2% for HER2, 6% for p53, 15% for bcl-2, 19% for topoisomerase II-alpha, 24% for HSP27 and 30% for HSP70. For the subgroup of patients with positive BM in the primary tumour, the percentage of discordance was 6% for HER2, 7% for p53, 14% for bcl-2, 19% for HSP70, 21% for topoisomerase II-alpha and 36% for HSP27. For the subgroup of patients with positive BM in the lymph nodes, the percentage of discordance was 9% for bcl-2, 15% for HER2 and p53, 21% for topoisomerase II-alpha, 22% for HSP27 and 25% for HSP70. CONCLUSIONS: 1) No biological marker had 100% concordant results. 2) Although some discordant cases might be explained by the limitations of the IHC technique, future studies aiming to evaluate the predictive value of BM in the adjuvant therapy of breast cancer should take into account a possible difference in BM expression between the primary and the metastatic sites.

Yeast screens identify the RNA polymerase II CTD and SPT5 as relevant targets of BRCA1 interaction.

BRCA1 has been implicated in numerous DNA repair pathways that maintain genome integrity, however the function responsible for its tumor suppressor activity in breast cancer remains obscure. To identify the most highly conserved of the many BRCA1 functions, we screened the evolutionarily distant eukaryote Saccharomyces cerevisiae for mutants that suppressed the G1 checkpoint arrest and lethality induced following heterologous BRCA1 expression. A genome-wide screen in the diploid deletion collection combined with a screen of ionizing radiation sensitive gene deletions identified mutants that permit growth in the presence of BRCA1. These genes delineate a metabolic mRNA pathway that temporally links transcription elongation (SPT4, SPT5, CTK1, DEF1) to nucleopore-mediated mRNA export (ASM4, MLP1, MLP2, NUP2, NUP53, NUP120, NUP133, NUP170, NUP188, POM34) and cytoplasmic mRNA decay at P-bodies (CCR4, DHH1). Strikingly, BRCA1 interacted with the phosphorylated RNA polymerase II (RNAPII) carboxy terminal domain (P-CTD), phosphorylated in the pattern specified by the CTDK-I kinase, to induce DEF1-dependent cleavage and accumulation of a RNAPII fragment containing the P-CTD. Significantly, breast cancer associated BRCT domain defects in BRCA1 that suppressed P-CTD cleavage and lethality in yeast also suppressed the physical interaction of BRCA1 with human SPT5 in breast epithelial cells, thus confirming SPT5 as a relevant target of BRCA1 interaction. Furthermore, enhanced P-CTD cleavage was observed in both yeast and human breast cells following UV-irradiation indicating a conserved eukaryotic damage response. Moreover, P-CTD cleavage in breast epithelial cells was BRCA1-dependent since damage-induced P-CTD cleavage was only observed in the mutant BRCA1 cell line HCC1937 following ectopic expression of wild type BRCA1. Finally, BRCA1, SPT5 and hyperphosphorylated RPB1 form a complex that was rapidly degraded following MMS treatment in wild type but not BRCA1 mutant breast cells. These results extend the mechanistic links between BRCA1 and transcriptional consequences in response to DNA damage and suggest an important role for RNAPII P-CTD cleavage in BRCA1-mediated cancer suppression.

Imátgenes 25, 26, 27 y última imatgen

Su mirada recorrió los lomos del estante inferior y se detuvo en un título que le llamó la atención. Lo liberó de la hilera que lo aprisionaba y lo abrió al azar. Al menos eso era lo que pretendía, aunque el libro se abrió por una página señalada con un pliegue en la esquina superior. Quien lo practicó quería señalar un punto con una indicación perenne. Seguro que era cosa de su abuelo, fallecido hacía ya unos cuantos años. Fue precisamente el recuerdo de su muerte lo que le animó a entrar en la biblioteca. No sabía porqué, pero de repente le había venido a la mente la imagen del anciano leyendo ensimismado en aquel sillón antiguo, rodeado de incontables volúmenes, páginas, frases, palabras, letras.

History of the Continuous Plankton Recorder Database. Proceedings of 'The Colour of Ocean Data' Symposium, Brussels, 25-27 November 2002.

The Continuous Plankton Recorder Survey has operated in the North Atlantic and North Sea since 1931, providing a unitque multi-decadal dataset of plankton abundance. Over the period since 1931 technology has advanced and the system for storing the CPR data has developed considerably. From 1969 an electronic database was developed to store the results of CPR analysis. Since that time the CPR database has undergone a number of changes due to performance related factors such as processor speed and disk capacity as well as economic factors such as the cost of software. These issues have been overcome and the system for storing and retrieving the data has become more user friendly at every development stage.