Bacterial diversity of terra preta and pristine forest soil from the Western Amazon

The survey presented here describes the bacterial diversity and community structures of a pristine forest soil and an anthropogenic, terra preta from the Western Amazon forest using molecular methods to identify the predominant phylogenetic groups. Bacterial community similarities and species diversity in the two soils were compared using oligonucleotide fingerprint grouping of 16S rRNA gene sequences for 1500 clones (OFRG) and by DNA sequencing. The results showed that both soils had similar bacterial community compositions over a range of phylogenetic distances, among which Acidobacteria were predominant, but that terra preta supported approximately 25% greater species richness. The survey provides the first detailed analysis of the composition and structure of bacterial communities from terra preta anthrosols using noncultured-based molecular methods. (c) 2006 Elsevier Ltd. All rights reserved.

Biomass and Stand Characteristics of a Highly Productive Mixed Douglas-Fir and Western Hemlock Plantation in Coastal Washington

Aboveground biomass predictive equations were developed for a highly productive 47-year-old mixed Douglas-fir and western hemlock stand in southwest Washington State to characterize the preharvest stand attributes for the Fall River Long-Term Site Productivity Study. The equations were developed using detailed biomass data taken from 31 Douglas-fir and 11 western hemlock trees within the original stand. The stand had an average of 615 live trees per hectare, with an average dbh of 35.6 cm (39.1 cm for Douglas-fir and 33.3 cm for western hemlock) and an average total tree height of 31.6 m (32.8 m for Douglas-fir and 30.2 m for western hemlock). Equations developed were of the form In Y = b(1) + b(2) In dbh, where Y = biomass in kg, dbh = diameter in cm at 1.3 m height, b(1) = intercept, and b(2) = slope of equation. Each tree part was estimated separately and also combined into total aboveground biomass. The total aboveground biomass estimation equations were In Y = -0.9950 + 2.0765 In dbh for Douglas-fir, and In Y = -1.6612 + 2.2321 In dbh for western hemlock. The estimate of the aboveground live-free biomass was of 395 Mg ha(-1) (235 Mg ha(-1) for Douglas-fir and 160 Mg ha(-1) for western hemlock), with 9.5, 29.3, 12.9, 308, and 32.7 Mg ha(-1) in the foliage, live branches, dead branches, stem wood, and stem hark, respectively. When compared with biomass estimates from six other studies, ranging in age from 22 to 110 years and from 96.3 to 636 Mg ha(-1), the biomass of the Fall River site was relatively high for its age, indicating very high productivity.

Distribution of stream macroalgal communities from the mid-western region of Paraná state, southern Brazil: importance of local scale variation

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Detection of antibody to Toxocara vitulorum perieneteric fluid antigens (Pe) in the colostrum and serum of buffalo calves and cows by Western blotting

Toxocara vitulorum, a nematode parasite in the small intestine of cattle and water buffaloes, causes high morbidity and mortality of 1-3 months old buffalo calves. This research evaluated the specific perieneteric antigens (Pe) reactivity of anti-T. vitulorum-Pe antibody (Tv-Pe-Ab) in both immune sera and colostrum from buffalo cows immediately post-partum from buffalo cows. The presence of Tv-Pe-Ab in sera of buffalo newborn calves was also examined at 1 day before and after suckling the colostrum as well as in sera from naturally infected calves at the beginning and peak of the maximum infection and then again during the period of rejection and post-rejection of the parasite. Pe antigens were characterized for Tv-Pe-Ab by SDS-PAGE and Western blot (WB). The SDS-PAGE showed that Pe contained nine protein bands (11, 14, 31, 38, 58, 76, 88,112 and 165 kDa). All Pe bands were recognized by Tv-Pe-Ab in sera and colostrum of buffalo cows. Only the serum antibodies of buffalo calves at 1 day of age after suckling the colostrum and during the beginning of T. vitulorum infection recognized Pe antigen's nine bands. In contrast, serum antibodies from 1-day-old buffalo calves, taken before suckling colostrum, did not react with any protein band. In suckling calves, which reached peak egg output, rejection and post-rejection stages of the infection, serum Tv-Pe-Ab reactivity with lower molecular weight protein bands (11-76 kDa) was lost and only reactivity with the Pe protein bands of higher molecular weight (88, 112 and 165 kDa) remained. (c) 2005 Elsevier B.V. All rights reserved.

Serological follow-up of patients with paracoccidioidomycosis treated with itraconazole using Dot-blot, ELISA and Western-blot

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Cryptic hammerhead shark lineage occurrence in the western South Atlantic revealed by DNA analysis

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Species delimitation in sharpnose sharks (genus Rhizoprionodon) in the western Atlantic Ocean using mitochondrial DNA

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

An old taxonomic dilemma: the identity of the western south Atlantic lebranche mullet (Teleostei: Perciformes: Mugilidae)

The identification of the lebranche mullet in the western south Atlantic has long been problematical. In most recent works either Mugil liza Valenciennes and M. platanus Gunther, 1880 or M. liza and M. cephalus Linnaeus, 1758 were recognized from the region and more rarely the occurrence of only one species has been proposed but without sufficient morphological, biochemical or molecular data to allow the designation of the taxonomically appropriate name. Analysis of meristic and morphometric data taken from samples collected from Venezuela to Argentina, clearly indicates that there is only one species of lebranche mullet in the Caribbean Sea region and the Atlantic coast of South America and that Mugil liza is the appropriate name. The comparison of the combined data from all the samples of M. liza with the data taken from one sample of M. cephalus that originated in the Mediterranean, the possible locality from which type specimens were collected (Eschmeyer and Fricke, 2009), revealed significant differences indicating that they are different species. It is also suggested that individuals from the western north Atlantic identified as M. cephalus might represent a population of M. liza in this region.

A NEW SPECIES of COSMOCERCOIDES (NEMATODA: COSMOCERCIDAE) FROM A GYMNOPHTHALMID LIZARD of WESTERN BRAZIL

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

A new species of Proceratophrys (Anura: Cycloramphidae) from western Brazil

A new species of Proceratophrys cristiceps group is described from western Brazil. The new species is characterized by absence of prominent palpebral appendages and postocular swellings, males measuring 44.2 +/- 2.1 mm SVL (41.1-47.3 mm) and females 56.4 +/- 2.8 mm SVL (52.7-59.8 mm), snout rounded in dorsal, and obtuse in lateral views, dorsal skin uniformly rugose, with no elevated warts, and tympanum defined as a depression on the skin. The new species was found in Guapore river drainage, a highly impacted area due to the construction of water dams.

Natural history of the coral snake Micrurus Pyrrhocryptus Cope 1862 (Elapidae) from semideciduous forests of western Brazil.

Coral snakes in the genus Micrurus are widely distributed in the Neotropics, with more than 50 species already described in this region. They are primarily ground or leaf litter dwellers, feed on snakes or other elongate vertebrates, and tend to reproduce during the rainy season. We present data on the biology of Micrurus pyrrhocryptus from two semideciduous forests of Mato Grosso do Sul state, western Brazil. Two snake species were consumed: the dipsadid Sibynomorphus lavillai and the typhlopid Typhlops brongersmianus. Sexual dimorphism is marked in M. pyrrhocryptus. with males attaining larger sizes and having longer tails. Activity was concentrated in the wet season, when reproduction occurs. The defensive behavior in this species is similar to that displayed by other Micron's, although less pronounced.

Helminths of the teiid lizard Kentropyx calcarata (Squamata) from an Amazonian site in western Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Reproductive biology and recruitment of Xiphopenaeus kroyeri in a marine protected area in the Western Atlantic: implications for resource management

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

First record of Amblyomma rotundatum Koch, 1844 (Acari: Ixodidae) parasitizing Paleosuchus palpebrosus Cuvier, 1807 (Reptilia: Crocodylidae), in the western border of Pantanal, Mato Grosso do Sul, Brazil.

This is the first record of Amblyomma rotundatum parasitizing Paleosuchus palpebrosus. This record was made during a herpetofaunal study carried out in high-elevation habitats that are under protection in the mountain range "Serra do Amolar", located in the western border of Brazilian Pantanal, in the state of Mato Grosso do Sul.

Mammal occurrence and roadkill in two adjacent ecoregions (Atlantic Forest and Cerrado) in south-western Brazil

This paper examines the frequencies of mammal roadkill in two adjacent biogeographic ecoregions (Atlantic Forest and Cerrado) of Brazil. Mammals were recorded during a seven-year period and over 3,900 km of roads, in order to obtain data for frequencies of species in habitats (sites) and frequencies of species killed by cars on roads. Sites (n = 80) within ecoregions (Cerrado, n = 57; Atlantic Forest, n = 23) were searched for records of mammals. Species surveyed in the entire region totaled 33, belonging to nine orders and 16 families. In the Cerrado, 31 species were recorded in habitats; of these, 25 were found dead on roads. In the Atlantic Forest ecoregions, however, we found 21 species in habitats, 16 of which were also found dead on roads. There was no overall significant difference between ecoregions for frequencies of occurrence in habitats or for roadkills, but there were differences between individual species. Hence, anteaters were mostly recorded in the Cerrado ecoregion, whereas caviomorph rodents tended to be more frequent in the Atlantic Forest ecoregion (seen mainly by roadkills). The greater number of species (overall and threatened) and the greater abundance of species records in the Cerrado suggest that this ecoregion has a greater biodiversity and is better conserved than the Atlantic Forest ecoregion, in the state of Mato Grosso do Sul, south-western Brazil.