Rapid prototyping of compliant human aortic roots for assessment of valved stents.

Adequate in-vitro training in valved stents deployment as well as testing of the latter devices requires compliant real-size models of the human aortic root. The casting methods utilized up to now are multi-step, time consuming and complicated. We pursued a goal of building a flexible 3D model in a single-step procedure. We created a precise 3D CAD model of a human aortic root using previously published anatomical and geometrical data and printed it using a novel rapid prototyping system developed by the Fab@Home project. As a material for 3D fabrication we used common house-hold silicone and afterwards dip-coated several models with dispersion silicone one or two times. To assess the production precision we compared the size of the final product with the CAD model. Compliance of the models was measured and compared with native porcine aortic root. Total fabrication time was 3 h and 20 min. Dip-coating one or two times with dispersion silicone if applied took one or two extra days, respectively. The error in dimensions of non-coated aortic root model compared to the CAD design was <3.0% along X, Y-axes and 4.1% along Z-axis. Compliance of a non-coated model as judged by the changes of radius values in the radial direction by 16.39% is significantly different (P<0.001) from native aortic tissue--23.54% at the pressure of 80-100 mmHg. Rapid prototyping of compliant, life-size anatomical models with the Fab@Home 3D printer is feasible--it is very quick compared to previous casting methods.

Transitory glutathione deficit during brain development induces cognitive impairment in juvenile and adult rats: relevance to schizophrenia.

Glutathione (GSH) metabolism dysfunction is one risk factor in schizophrenia. A transitory brain GSH deficit was induced in Wistar (WIS) and mutant (ODS; lacking ascorbic acid synthesis) rats using BSO (l-buthionine-(S,R)-sulfoximine) from post-natal days 5-16. When GSH was re-established to physiological levels, juvenile BSO-ODS rats were impaired in the water maze task. Long after treatment cessation, adult BSO-WIS/-ODS rats showed impaired place discrimination in the homing board with distributed visual or olfactory cues. Their accuracy was restored when a single cue marked the trained position. Similarly, more working memory errors were made by adult BSO-WIS in the radial maze when several olfactory cues were present. These results reveal that BSO rats did not suffer simple sensory impairment. They were selectively impaired in spatial memory when the task required the integration of multimodal or olfactory cues. These results, in part, resemble some of the reported olfactory discrimination and cognitive impairment in schizophrenia.

Atlas-based segmentation of pathological MR brain images using a model of lesion growth.

We propose a method for brain atlas deformation in the presence of large space-occupying tumors, based on an a priori model of lesion growth that assumes radial expansion of the lesion from its starting point. Our approach involves three steps. First, an affine registration brings the atlas and the patient into global correspondence. Then, the seeding of a synthetic tumor into the brain atlas provides a template for the lesion. The last step is the deformation of the seeded atlas, combining a method derived from optical flow principles and a model of lesion growth. Results show that a good registration is performed and that the method can be applied to automatic segmentation of structures and substructures in brains with gross deformation, with important medical applications in neurosurgery, radiosurgery, and radiotherapy.

Low-pressure environment and remodelling of the forearm vein in Brescia-Cimino haemodialysis access.

BACKGROUND: The aim of the study was to determine which, and to what extent, haemodynamic parameters contribute to the remodelling of the venous limb of the Brescia-Cimino haemodialysis access. METHODS: The dimensions of the radial artery and the venous limb of the haemodialysis access were measured by an echo-tracking technique. In six ESRD patients undergoing primary arteriovenous fistula (AVF) formation, vessel diameter, wall thickness, blood pressure and blood flow were measured after the operation, and at 1 and 3 months follow-up. The contralateral forearm vessels in their native position served as baseline values for comparison. RESULTS: The diameter of the proximal antecubital vein progressively increased over the study period without reaching significant differences (4430, 5041 and 6620 microm at weeks 1, 4 and 12 respectively), whereas the intima-media thickness remained unchanged. The venous dilatation was associated with a reduction of the mean shear stress that culminated after the operation and progressively returned to normal venous values at 3 months (24.5 vs 10.4 dyne/cm(2), P<0.043). Thus the venous limb of the AVF undergoes eccentric hypertrophy as demonstrated by the increase in wall cross-sectional area (4.42 vs 6.32 mm(2) at week 1 vs week 12, P<0.028). At the time of the operation, the blood pressure in the AVF was 151+/-14/92.4+/-11 mmHg vs 49+/-19/24.5+/-6 mmHg (means+/-SEM) for the radial artery and the venous limb of the vascular access, respectively. One year after the operation the blood pressure in the venous limb had not changed: 42+/-14/25.3+/-7 mmHg (means+/-SEM). Under these conditions, the systolo-diastolic diameter changes observed in the radial artery and the antecubital vein were within a similar range at all time points: 56+/-17 vs 90+/-26 microm (means+/-SEM) at week 12. CONCLUSIONS: The increased circumferential stress resulting from the flow-mediated dilatation rather than the elevation of blood pressure appears to represent the main contributing factor to the eccentric hypertrophy of the venous limb of Brescia-Cimino haemodialysis access.

Dense deformation field estimation for atlas-based segmentation of pathological MR brain images.

Atlas registration is a recognized paradigm for the automatic segmentation of normal MR brain images. Unfortunately, atlas-based segmentation has been of limited use in presence of large space-occupying lesions. In fact, brain deformations induced by such lesions are added to normal anatomical variability and they may dramatically shift and deform anatomically or functionally important brain structures. In this work, we chose to focus on the problem of inter-subject registration of MR images with large tumors, inducing a significant shift of surrounding anatomical structures. First, a brief survey of the existing methods that have been proposed to deal with this problem is presented. This introduces the discussion about the requirements and desirable properties that we consider necessary to be fulfilled by a registration method in this context: To have a dense and smooth deformation field and a model of lesion growth, to model different deformability for some structures, to introduce more prior knowledge, and to use voxel-based features with a similarity measure robust to intensity differences. In a second part of this work, we propose a new approach that overcomes some of the main limitations of the existing techniques while complying with most of the desired requirements above. Our algorithm combines the mathematical framework for computing a variational flow proposed by Hermosillo et al. [G. Hermosillo, C. Chefd'Hotel, O. Faugeras, A variational approach to multi-modal image matching, Tech. Rep., INRIA (February 2001).] with the radial lesion growth pattern presented by Bach et al. [M. Bach Cuadra, C. Pollo, A. Bardera, O. Cuisenaire, J.-G. Villemure, J.-Ph. Thiran, Atlas-based segmentation of pathological MR brain images using a model of lesion growth, IEEE Trans. Med. Imag. 23 (10) (2004) 1301-1314.]. Results on patients with a meningioma are visually assessed and compared to those obtained with the most similar method from the state-of-the-art.

Estabilidade temporal da distribuição espacial da umidade do solo em área irrigada por pivô central

A heterogeneidade do solo faz com que o armazenamento de água seja variável, sendo necessária uma amostragem intensa, para caracterizar a sua distribuição espacial em uma área irrigada. Para fins de manejo da irrigação, é importante o monitoramento da umidade do solo durante o processo de secagem entre duas irrigações sucessivas. O presente trabalho tem por objetivos avaliar a estabilidade temporal da distribuição espacial da umidade do solo, a correlação da umidade com conteúdo de argila e avaliar se há estrutura de dependência espacial dessas variáveis. Quanto mais estável for a distribuição espacial da umidade e mais estreita a correlação com a textura, menos intensas poderão ser as amostragens para fins de controle das irrigações. Em área irrigada por pivô central, no campus da ESALQ/USP, de solo Podzólico Vermelho-Escuro, a umidade foi medida em pontos espaçados de 2,83 m ao longo de uma transeção radial, nas profundidades de 0,15 e 0,30 m, por meio de uma sonda de nêutrons. O conteúdo de argila e a densidade global foram também medidos. As medidas foram feitas durante um período de secagem do solo. A estabilidade temporal das distribuições espaciais foi avaliada por meio do coeficiente de correlação e da técnica de diferenças relativas. Foi constatada a persistência no tempo das distribuições de umidade, sendo possível identificar pontos de amostragem cujos valores permitem estimar a média geral da umidade na área, a qualquer momento. A dependência espacial da umidade foi avaliada por meio de semivariogramas, os quais mostraram que mais de 50% da variação dos dados pode ser atribuída à variação estruturada no espaço, cujo padrão se mantém estável no tempo e varia com a profundidade. Na camada inferior, a correlação espacial entre umidade e conteúdo de argila é descrita por semivariograma cruzado com efeito pepita nulo. A estrutura de dependência espacial pode ser usada no mapeamento da umidade do solo.

Padrões de amostragem e intensidade de krigagem na caracterização do armazenamento de água no solo, em área irrigada por pivô central

A qualidade da irrigação tem sido descrita por parâmetros calculados admitindo-se ser a capacidade de armazenamento de água no solo uma constante. No entanto, tal propriedade do solo apresenta-se variável no espaço. A preocupação com aspectos ambientais e econômicos tem levado ao conceito de manejo da cultura em áreas específicas, o que torna importante o conhecimento da distribuição espacial de propriedades do solo. A geoestatística torna possível a identificação da estrutura de dependência espacial e o mapeamento de uma propriedade do solo. O objetivo deste trabalho foi identificar intensidades de amostragem e de krigagem em blocos, adequadas para estimar o armazenamento de água no solo, para desejado nível de precisão nos parâmetros que caracterizam a qualidade da irrigação. Em área irrigada por pivô central, no campus da ESALQ/USP, foi feita uma amostragem segundo uma transeção radial com espaçamento de 2,83 m. Em cada ponto, foi determinada a capacidade de armazenamento de água no solo, entre as tensões de 0,01 e 0,08 MPa, para 0,30 m de profundidade. De posse do semivariograma obtido para os dados da transeção, foi feita a krigagem em blocos de diferentes comprimentos, entre 2 e 30 m, para espaçamentos amostrais simulados de malhas com lado entre 2 e 20 m, na direção da transeção. A cada combinação de espaçamento e comprimento de bloco, foram associados a respectiva variância de krigagem e o volume de água percolado, calculados com base em lâmina aplicada igual à média dos valores de armazenamento medidos. A krigagem deve ser realizada com os menores valores de lado de bloco (2 m), desde que recursos computacionais não sejam limitantes. O uso de amostragem intensa não promoveu ganho significativo de qualidade das estimativas, em relação aos maiores espaçamentos. Malha de lado igual a 20 m pode ser usada, embora o desejável seja lado de 10 m. É necessária uma amostragem na curta escala para a identificação do semivariograma nas distâncias inferiores a estas. Apesar de promover uma suavização, a krigagem deve ser usada na descrição do padrão espacial de armazenamento, por permitir melhor avaliação dos volumes de excesso e de déficit e, principalmente, por permitir identificar os locais onde eles ocorrem.

Paleobiology and skeletochronology of Jurassic dinosaurs: implications from the histology and oxygen isotope compositions of bones

Fossil biogenic phosphate of fast-growing primary bone tissue of dinosaurs can preserve a histologic and isotopic time-series of annual seasonality in temperature variations, similar to tooth enamel and other accretionary skeletal phases such as corals or wood. On two bone fragments from sympatric dinosaurs with different histologic patterns of bone growth, high-resolution oxygen isotope profiles were analyzed along the radial direction of bone growth. The investigated specimens are from the Jurassic Shishugou Formation in the Junggar Basin, NW China and have distinct patterns of compositional variation. A fibrolamellar dinosaur bone with multiple lines of arrested growth (LAGs) and periodic growth cycles of decreasing bone laminae thickness displays a cyclic intra-bone variation in delta(18)O values of about 2parts per thousand corresponding with the LAGs. These growth cycles in fast-growing fibrolamellar bone provide evidence for seasonal growth of dinosaurs in lower latitudes ( similar to 45degreesN), possibly influenced by a monsoon-type paleoclimate. Seasonal changes in temperature and water supply are consistent with the oxygen isotope composition measured in dinosaur bone phosphate as well as with growth rings in contemporaneous fossil conifer wood from the same locality. In contrast, a plexiform sympatric sauropod bone displays continuous growth, free of LAGs and has a lower intra-bone variation of less than or equal to 0.8parts per thousand. Differences in bone histology are also reflected in the oxygen isotopic composition and its intra-bone variability, indicating different physiological responses to external climatic stress between sympatric dinosaur species. Seasonal intra-bone oxygen isotope variations combined with bone histology may thus yield new insights into species-specific response to climatic stress and its influence on dinosaur growth, formation of growth marks, growth rates, as welt as dinosaur thermophysiology. (C) 2004 Elsevier B.V All rights reserved.

Avaliação de fatores edafoclimáticos e do manejo na produção de cafeeiros (Coffea arabica L.) no Oeste Paulista

Atributos do clima, solo e manejo foram caracterizados em 10 lavouras comerciais de café, estabelecidas na região oeste do estado de São Paulo, nos municípios de Sagres, Pompéia, Iacri, Bastos, Herculândia, Marília, Vera Cruz, Garça e Gália. Os objetivos foram identificar os principais fatores limitantes à cultura e estabelecer um modelo multivariado simples para explicar as produções observadas entre 1984 e 1989. Foram analisados, por correlação simples, mais de 2.000 atributos em relação às produções finais. Os atributos que apresentaram significância a 5% de probalidade pelo teste t de Student foram combinados em sucessivas análises de regressão múltipla. Três equações, com quatorze, cinco e seis variáveis preditoras, foram selecionadas, com graus de explicação da produção observada da ordem de 77, 73 e 75%, respectivamente. Quatro variáveis foram comuns aos três modelos: produção do ano anterior, idade da lavoura, temperatura mínima absoluta média na época do abotoamento e florescimento e soma dos teores de silte e argila nos horizontes subsuperficiais. Outras variáveis selecionadas foram: precipitação na época do abotoamento e florescimento; precipitação na época da maturação e colheita; densidade do solo e água disponível junto à cova (camada de 20-40 cm); macroporosidade na rodagem de máquinas (camada de 0-20 cm); adubação nitrogenada; pH em água e fósforo, ambos na área adubada (camada de 20-40 cm); teor de cálcio trocável e relação Mg:K trocáveis, ambos na área adubada (camada de 0-20 cm). A análise dos dados de produção no período de seis anos mostrou que as lavouras encontravam-se em processo de depauperamento, com declínio da produtividade da ordem de 400 kg ha-1 ano-1. As áreas necessitavam de melhoria da calagem, fosfatagem em profundidade, restabelecimento dos níveis de magnésio no solo e adubação mineral equilibrada. Também ficou evidenciada a necessidade de ser evitada a instalação da lavoura em áreas de acúmulo de ar frio no inverno ou solos com acentuado gradiente textural.

Prevalença d’artefactes d’amplificació de la corba de pressió arterial durant la monitorització invasiva. estudi transversal.

Els artefactes en la corba de pressió arterial durant la monitorització invasiva pot induir errors de diagnòstic i tractaments inadequats. Es presenten els resultats inicials d’un estudi transversal en pacients postoperats on s’observa que la prevalença d’artefactes d’amplificació de la corba és del 33,3%. Alguns factors que podrien condicionar aquesta aparició són localització radial de la cánula, canulació major de 48 hores i la monitorització mitjançant el sistema Vigileo. La conscienciació de l’existència d’aquests fenòmens, generant estats d’alerta i millories en el manteniment dels circuits de monitorització permetrien una millor precisió de la monitorització, condicionant un maneig més òptim dels pacients.

Genetic manipulation of adult-born hippocampal neurons rescues memory in a mouse model of Alzheimer's disease.

In adult mammals, neural progenitors located in the dentate gyrus retain their ability to generate neurons and glia throughout lifetime. In rodents, increased production of new granule neurons is associated with improved memory capacities, while decreased hippocampal neurogenesis results in impaired memory performance in several memory tasks. In mouse models of Alzheimer's disease, neurogenesis is impaired and the granule neurons that are generated fail to integrate existing networks. Thus, enhancing neurogenesis should improve functional plasticity in the hippocampus and restore cognitive deficits in these mice. Here, we performed a screen of transcription factors that could potentially enhance adult hippocampal neurogenesis. We identified Neurod1 as a robust neuronal determinant with the capability to direct hippocampal progenitors towards an exclusive granule neuron fate. Importantly, Neurod1 also accelerated neuronal maturation and functional integration of new neurons during the period of their maturation when they contribute to memory processes. When tested in an APPxPS1 mouse model of Alzheimer's disease, directed expression of Neurod1 in cycling hippocampal progenitors conspicuously reduced dendritic spine density deficits on new hippocampal neurons, to the same level as that observed in healthy age-matched control animals. Remarkably, this population of highly connected new neurons was sufficient to restore spatial memory in these diseased mice. Collectively our findings demonstrate that endogenous neural stem cells of the diseased brain can be manipulated to become new neurons that could allow cognitive improvement.

Lipid metabolism in myelinating glial cells: lessons from human inherited disorders and mouse models.

The integrity of central and peripheral nervous system myelin is affected in numerous lipid metabolism disorders. This vulnerability was so far mostly attributed to the extraordinarily high level of lipid synthesis that is required for the formation of myelin, and to the relative autonomy in lipid synthesis of myelinating glial cells because of blood barriers shielding the nervous system from circulating lipids. Recent insights from analysis of inherited lipid disorders, especially those with prevailing lipid depletion and from mouse models with glia-specific disruption of lipid metabolism, shed new light on this issue. The particular lipid composition of myelin, the transport of lipid-associated myelin proteins, and the necessity for timely assembly of the myelin sheath all contribute to the observed vulnerability of myelin to perturbed lipid metabolism. Furthermore, the uptake of external lipids may also play a role in the formation of myelin membranes. In addition to an improved understanding of basic myelin biology, these data provide a foundation for future therapeutic interventions aiming at preserving glial cell integrity in metabolic disorders.

Direct Fourier Tomographic Reconstruction Image-To-Image Filter

We present an open-source ITK implementation of a directFourier method for tomographic reconstruction, applicableto parallel-beam x-ray images. Direct Fourierreconstruction makes use of the central-slice theorem tobuild a polar 2D Fourier space from the 1D transformedprojections of the scanned object, that is resampled intoa Cartesian grid. Inverse 2D Fourier transform eventuallyyields the reconstructed image. Additionally, we providea complex wrapper to the BSplineInterpolateImageFunctionto overcome ITKâeuro?s current lack for image interpolatorsdealing with complex data types. A sample application ispresented and extensively illustrated on the Shepp-Loganhead phantom. We show that appropriate input zeropaddingand 2D-DFT oversampling rates together with radial cubicb-spline interpolation improve 2D-DFT interpolationquality and are efficient remedies to reducereconstruction artifacts.

High sensitivity of immature GABAergic neurons to blockers of voltage-gated calcium channels.

The involvement of voltage-gated calcium channels in the survival of immature CNS neurons was studied in aggregating brain cell cultures by examining cell type-specific effects of various channel blockers. Nifedipine (10 microM), a specific blocker of L-type calcium channels, caused a pronounced and irreversible decrease of glutamic acid decarboxylase activity, whereas the activity of choline acetyltransferase was significantly less affected. Flunarizine (1-10 microM, a relatively unspecific ion channel blocker) elicited similar effects, that were attenuated by NMDA. The glia-specific marker enzymes, glutamine synthetase and 2',3'-cyclic nucleotide 3'-phosphohydrolase, were affected only after treatment with high concentrations of nifedipine (50 microM) or NiCl2 (100 microM, shown to block T-type calcium channels). Nifedipine (50 microM), NiCl2 (100 microM), and flunarizine (5 microM) also caused a significant increase in the soluble nucleosome concentration, indicating increased apoptotic cell death. This effect was prevented by cycloheximide (1 microM). Furthermore, the combined treatment with calcicludine (10 nM, blocking L-type calcium channels) and funnel-web spider toxin-3.3 (100 nM, blocking T-type channels) also caused a significant increase in free nucleosomes as well as a decrease in glutamic acid decarboxylase activity. In contrast, cell viability was not affected by peptide blockers specific for N-, P-, and/or Q-type calcium channels. Highly differentiated cultures showed diminished susceptibility to nifedipine and flunarizine. The present data suggest that the survival of immature neurons, and particularly that of immature GABAergic neurons, requires the sustained entry of Ca2+ through voltage-gated calcium channels.

uvbyHbeta photometry of main sequence A type stars.

We present Stroemgren uvby and Hbeta_ photometry for a set of 575 northern main sequence A type stars, most of them belonging to the Hipparcos Input Catalogue, with V from 5mag to 10mag and with known radial velocities. These observations enlarge the catalogue we began to compile some years ago to more than 1500 stars. Our catalogue includes kinematic and astrophysical data for each star. Our future goal is to perform an accurate analysis of the kinematical behaviour of these stars in the solar neighbourhood.