Genome wide interactions of wild-type and activator bypass forms of σ54

Enhancer-dependent transcription involving the promoter specificity factor σ54 is widely distributed amongst bacteria and commonly associated with cell envelope function. For transcription initiation, σ54-RNA polymerase yields open promoter complexes through its remodelling by cognate AAA+ ATPase activators. Since activators can be bypassed in vitro, bypass transcription in vivo could be a source of emergent gene expression along evolutionary pathways yielding new control networks and transcription patterns. At a single test promoter in vivo bypass transcription was not observed. We now use genome-wide transcription profiling, genome-wide mutagenesis and gene over-expression strategies in Escherichia coli, to (i) scope the range of bypass transcription in vivo and (ii) identify genes which might alter bypass transcription in vivo. We find little evidence for pervasive bypass transcription in vivo with only a small subset of σ54 promoters functioning without activators. Results also suggest no one gene limits bypass transcription in vivo, arguing bypass transcription is strongly kept in check. Promoter sequences subject to repression by σ54 were evident, indicating loss of rpoN (encoding σ54) rather than creating rpoN bypass alleles would be one evolutionary route for new gene expression patterns. Finally, cold-shock promoters showed unusual σ54-dependence in vivo not readily correlated with conventional σ54 binding-sites.

Control of wild rubber extraction in the forests of northeast India, 1850-1880

This paper uses the history of rubber extraction to explore competing attempts to control the forest environments of Assam and beyond in the second half of the nineteenth century. Forest communities faced rival efforts at environmental control from both European and Indian traders, as well as from various centres of authority within the Raj. Government attempts to regulate rubber collection were undermined by the weak authority of the Raj in these regions, leading to widespread smuggling. Partly in response to the disruptive influence of rubber traders on the frontier, the Raj began to restrict the presence of outsiders in tribal regions, which came to be understood as distinct areas outside British control. When rubber yields from the forests nearest the Brahmaputra fell in the wake of intensive exploitation, India's scientific foresters demanded and from 1870 obtained the ability to regulate the Assamese forests, blaming indigenous rubber tapping strategies for the declining yields and arguing that Indian rubber could be ‘equal [to] if not better' than Amazonian rubber if only tappers would change their practices. The knowledge of the scientific foresters was fundamentally flawed, however, and their efforts to establish a new type of tapping practice failed. By 1880, the government had largely abandoned attempts to regulate wild Indian rubber, though wild sources continued to dominate the supply of global rubber until after 1910.

A let-7 microRNA-binding site polymorphism in 3'-untranslated region of KRAS gene predicts response in wild-type KRAS patients with metastatic colorectal cancer treated with cetuximab monotherapy

PURPOSE: recent studies have found that KRAS mutations predict resistance to monoclonal antibodies targeting the epidermal growth factor receptor in metastatic colorectal cancer (mCRC). A polymorphism in a let-7 microRNA complementary site (lcs6) in the KRAS 3' untranslated region (UTR) is associated with an increased cancer risk in non-small-cell lung cancer and reduced overall survival (OS) in oral cancers. We tested the hypothesis whether this polymorphism may be associated with clinical outcome in KRAS wild-type (KRASwt) mCRC patients treated with cetuximab monotherapy.

PATIENTS AND METHODS: the presence of KRAS let-7 lcs6 polymorphism was evaluated in 130 mCRC patients who were enrolled in a phase II study of cetuximab monotherapy (IMCL-0144). Genomic DNA was extracted from dissected formalin-fixed paraffin-embedded tumor tissue, KRAS mutation status and polymorphism were assessed using direct sequencing and PCR restriction fragment length polymorphism technique.

RESULTS: KRAS let-7 lcs6 polymorphism was found to be related to object response rate (ORR) in mCRC patients whose tumors had KRASwt. The 12 KRASwt patients harboring at least a variant G allele (TG or GG) had a 42% ORR compared with a 9% ORR in 55 KRASwt patients with let-7 lcs6 TT genotype (P = 0.02, Fisher's exact test). KRASwt patients with TG/GG genotypes had trend of longer median progression-free survival (3.9 versus 1.3 months) and OS (10.7 versus 6.4 months) compared to those with TT genotypes.

CONCLUSIONS: these results are the first to indicate that the KRAS 3'UTR polymorphism may predict for cetuximab responsiveness in KRASwt mCRC patients, which warrants validation in other clinical trials.

Efficiency of starfish mopping in reducing predation on cultivated benthic mussels (Mytilus edulis Linnaeus)

The starfish, Asterias rubens, preys on mussels (Mytilus edulis), which are relaid during benthic cultivation processes. Starfish mops, a modified dredge used to remove starfish from mussel cultivation beds, are used in several fisheries today but few studies have attempted to quantify the effectiveness of this method in removing starfish. This study tested the effectiveness of starfish mopping to reduce starfish numbers on mussel beds in Belfast Lough, Northern Ireland. Video surveys to determine starfish densities on mussel beds were conducted between October 2013 and December 2014 using a GoPro™ camera attached to starfish mops. This allowed us to firstly test whether starfish density varied among mussel beds and to investigate how fluctuations in starfish numbers may vary in relationship to starfish ecology. We then estimated the efficiency of mops at removing starfish from mussel beds by comparing densities of starfish on beds, as determined using video footage, with densities removed by mops. Starfish abundance was similar among different mussel beds during this study. The efficiency of mops at removing estimated starfish aggregations varied among mussel beds (4–78%) and the mean reduction in starfish abundance was 27% (± SE 3.2). The effectiveness of mops at reducing starfish abundance was shown to decline as the initial density of starfish on mussel beds increased. It can be recommended that the exact deployment technique of mops on mussel beds should vary depending on the density of starfish locally. The area of mussel bed covered by mops during a tow, for example, should be less when starfish densities are high, to maintain efficiencies throughout the full length of tows and to optimise the removal of starfish from mussel beds. This strategy, by reducing abundance of a major predator, could assist in reducing losses in the mussel cultivation industry.

Ecological differences and coexistence in a guild of microparasites: Bartonella in wild rodents

The study of ecological differences among coexisting microparasites has been largely neglected, but it addresses important and unusual issues because there is no clear distinction in such cases between conventional (resource) and apparent competition. Here patterns in the population dynamics are examined for four species of Bartonella (bacterial parasites) coexisting in two wild rodent hosts, bank voles (Clethrionomys glareolus) and wood mice (Apodemus sylvaticus). Using generalized linear modeling and mixed effects models, we examine, for these four species, seasonal patterns and dependencies on host density (both direct and delayed) and, having accounted for these, any differences in prevalence between the two hosts. Whereas previous studies had failed to uncover species differences, here all four were different. Two, B. doshiae and B. taylorii, were more prevalent in wood mice, and one, B. birtlesii, was more prevalent in bank voles. B. birtlesii, B. grahamii, and B. taylorii peaked in prevalence in the fall, whereas B. doshiae peaked in spring. For B. birtlesii in bank voles, density dependence was direct, but for B. taylorii in wood mice density dependence was delayed. B. birtlesii prevalence in wood mice was related to bank vole density. The implications of these differences for species coexistence are discussed.

The dynamics of murid gammaherpesvirus 4 within wild, sympatric populations of bank voles and wood mice

Murid gammaherpesvirus 4 (MuHV-4) is widely used as a small animal model for understanding gammaherpesvirus infections in man. However, there have been no epidemiological studies of the virus in wild populations of small mammals. As MuHV-4 both infects cells associated with the respiratory and immune systems and attempts to evade immune control via various molecular mechanisms, infection may reduce immunocompetence with potentially serious fitness consequences for individuals. Here we report a longitudinal study of antibody to MuHV-4 in a mixed assemblage of bank voles (Clethrionomys glareolus) and wood mice (Apodemus sylvaticus) in the UK. The study was conducted between April 2001 and March 2004. Seroprevalence was higher in wood mice than bank voles, supporting earlier work that suggested wood mice were the major host even though the virus was originally isolated from a bank vole. Analyses of both the probability of having antibodies and the probability of initial seroconversion indicated no clear seasonal pattern or relationship with host density. Instead, infection risk was most closely associated with individual characteristics, with heavier males having the highest risk. This may reflect individual variation in susceptibility, potentially related to variability in the ability to mount an effective immune response.

Genetic structure, relationships and admixture with wild relatives in native pig breeds from Iberia and its islands

Background: Native pig breeds in the Iberian Peninsula are broadly classified as belonging to either the Celtic or the Mediterranean breed groups, but there are other local populations that do not fit into any of these groups. Most of the native pig breeds in Iberia are in danger of extinction, and the assessment of their genetic diversity and population structure, relationships and possible admixture between breeds, and the appraisal of conservation alternatives are crucial to adopt appropriate management strategies. Methods: A panel of 24 microsatellite markers was used to genotype 844 animals representing the 17 most important native swine breeds and wild populations existing in Portugal and Spain and various statistical tools were applied to analyze the results. Results: Genetic diversity was high in the breeds studied, with an overall mean of 13.6 alleles per locus and an average expected heterozygosity of 0.80. Signs of genetic bottlenecks were observed in breeds with a small census size, and population substructure was present in some of the breeds with larger census sizes. Variability among breeds accounted for about 20% of the total genetic diversity, and was explained mostly by differences among the Celtic, Mediterranean and Basque breed groups, rather than by differences between domestic and wild pigs. Breeds clustered closely according to group, and proximity was detected between wild pigs and the Mediterranean cluster of breeds. Most breeds had their own structure and identity, with very little evidence of admixture, except for the Retinto and Entrepelado varieties of the Mediterranean group, which are very similar. Genetic influence of the identified breed clusters extends beyond the specific geographical areas across borders throughout the Iberian Peninsula, with a very sharp transition from one breed group to another. Analysis of conservation priorities confirms that the ranking of a breed for conservation depends on the emphasis placed on its contribution to the betweenand within-breed components of genetic diversity. Conclusions: Native pig breeds in Iberia reveal high levels of genetic diversity, a solid breed structure and a clear organization in well-defined clusters.

Los pueblos indios en sus mitos 16: Quichuas amazonicos del Aguarico y San Miguel

La región del Napo tiene una posición geografica peculiar, que ha influido mucho en la historia de su gente. Por ella ha entrado Francisco de Orellana desde Quito al Amazonas y por ella, desde Belém do Pará, ha subido Pedro de Texeira hasta Quito. La facllidad de acceso desde los Andes y el hecho de tener ríos navegables ha permitido al Napo conocer fenómenos casi inexistentes en otras provincias orientales ecuatorianos, como por ejemplo el establecerse de haciendas desde tiempos relativamente remotos, con la consecuente conversión de la población indígena en personaje sometido. En la época funesta del auge cauchero el Napo fue la única provincia ecuatoriana seberamente afectada por el fenómeno, que determinó la reubicación forzada de muchas poblaciones Sin duda, de toda la Amazonía ecuatoriana, el Napo es la región cuya población, especalmente en el último siglo, ha sido mós diezmada, sometida, literalmente zarandeada. Es también la que ha recibido un rnayor aporte de migración serrana y costeña, aún antes del descubrimiento del petróleo, hasta el punto que hoy se está hablando de su subdiuisión en dos o tres provincias.

Evaluación temporal del uso actual del suelo del Bosque Protector Aguarongo y sus áreas colindantes. Área de estudio : Parroquias Santa Ana, San Bartolomé y Zhidmad

Se evaluó el uso actual del suelo, mediante la creación de mapas de uso/cobertura y capacidad de acogida; la problemática consiste en el crecimiento agropecuario; se validó esta información obteniendo que la expansión agropecuaria y las actividades antrópicas, aportan a la fragmentación del hábitat del bosque en detrimento de la biodiversidad existente.

Estudio de factibilidad para la creación de una Empresa Agroindustrial de maíz y comercialización de sus productos en la ciudad de Quito

Desde antes de la conquista el maíz era el principal producto alimenticio del hombre y de los animales en los pueblos americanos, el 15 de noviembre de 1492 dos mensajeros de Colón, al regresar de una exploración a Cuba, declararon haber visto "una clase de grano, que llaman maíz, de buen sabor cocinado, seco y en harina". El maíz se fue encontrando luego sucesivamente en toda América, desde Chile hasta Canadá. Aunque los conquistadores no llegaron a darse cuenta de ello, este grano dorado nativo de América era de mayor importancia para el mundo que todo el oro y la plata de México y el Perú. Actualmente no hay ningún país en el América Latina que no siembre maíz. En las tierras bajas del trópico se pueden producir varias cosechas al año; en otras regiones se da una, por lo general. El maíz constituye, con los frijoles, el alimento fundamental en los países americanos, en Estados Unidos lo llaman corn y se produce en escala gigantesca. Se estima que si la cosecha anual de dicho país se colocara en camiones de tamaño corriente, formarían una fila o procesión que daría la vuelta a la tierra cinco o seis veces. Las plantaciones de maíz cubren más de la décima parte de las tierras laborales de los E.U.A., los principales países productores son: China, la U.R.S.S., Brasil, México, Francia, Yugoslavia, Rumania, Italia, Rep. Sudáfrica y Argentina. El maíz pertenece a la familia de las gramíneas.

La escala de intensidad de apoyos (SIS). Adaptación inicial al contexto español y análisis de sus propiedades psicométricas

Se presenta el primer estudio del proceso de adaptación transcultural y comprobación de las propiedades psicométricas de la versión española de la Escala de Intensidad de Apoyos (SIS) de Thomson et al., publicada por la Asociación Americana de Retraso Mental (AAMR) en 2004. La SIS es un instrumento de planificación exclusivo y novedoso, diseñado para ayudar a los profesionales a determinar las necesidades de apoyo que las personas con discapacidad intelectual manifiestan en su vida cotidiana. Parte de la teoría de que toda persona es única y requiere su propio sistema de apoyos para prosperar. El estudio consta de dos partes: la primer, el proceso de adaptación transcultural; y la segunda, el análisis de las propiedades psicométricas de la versión española de la Escala con una muestra de adultos con discapacidad intelectual. Los análisis sugieren que es un instrumento fiable y válido en España. La publicación inminente de la Escala SIS en lengua española (Verdugo, Arias e Ibañez, 2007) permite confirmar en una amplia muestra, y con mayor rigor aún, los resultados aquí descritos.

Guía para la autodefensa de las personas con síndrome de Down y sus familias

Las personas con síndrome de Down tienen los mismos derechos que cualquier otra persona y, como ciudadanos en igualdad de condiciones, es importante que ellos mismos contribuyan al cambio social que se necesita para que el entorno no excluya a las personas que son distintas.

El objetivo de esta guía es mejorar la autodefensa de las personas con síndrome de Down a través del trabajo en colaboración con la familia y el entorno. Se trata de un texto con información útil y consejos prácticos para prevenir la discriminación, confirmar cuándo ésta está teniendo lugar y saber cómo actuar frente a ella.

Conferencia: Coferencia: Los medios de información y sus lenguages: el hipogrifo violento de nuestros días

- En el marco del curso En llegando a esta pasión II impartido por el maestro José Luis Ibáñez. - Evento coordinado en colaboración con el Grupo de Mujeres de la Asociación Mexicana de Amigos de la Universidad Hebrea de Jerusalem.

Mad O'Hara of Wild River due date card

This is a due date card for the book titled Mad O'Hara of Wild River, with stamped dates from 1941.

The nest and eggs of Bachman's warbler, helminthophila Bachmani (Aud.), taken near Charleston, South Carolina

This document contains information on the nest and eggs of the bird, Bachman’s Warbler.