Influência de substratos e fungos micorrízicos arbusculares no desenvolvimento vegetativo do porta-enxerto flying dragon. (Poncirus trifoliata, var. montruosa Swing.)

O presente estudo teve por objetivos avaliar o efeito da composição do substrato e da inoculação de duas espécies de fungos micorrízicos arbusculares (FMA) (Glomus clarum e Acaulospora scrobiculata) sobre o desenvolvimento vegetativo, o conteúdo em substâncias de reserva nos tecidos e a percentagem de colonização radicular por FMA no porta-enxerto Flying dragon (Poncirus trifoliata, var. monstruosa Swing). Os tratamentos consistiram de dois substratos: S1= solo + areia (1:1; v:v) e S2 = solo + areia + resíduo decomposto de casca de acácia-negra (2:2:1; v:v:v), ambos com e sem inoculação isolada de duas espécies de FMA (G. clarum e A. scrobiculata). Constatou-se que a adição de resíduo decomposto de casca de acácia-negra melhorou as características químicas e físicas do substrato, permitindo um maior desenvolvimento vegetativo e acúmulo de substâncias de reserva às plantas de Flying dragon em relação ao substrato solo + areia. A eficiência da simbiose foi variável com o substrato e com a espécie de FMA, onde o efeito positivo dos FMA foi notado apenas no substrato solo + areia, mais pobre nutricionalmente, sendo A. scrobiculata a espécie mais eficiente.

Variación morfológica de tres especies de curubas (Passiflora tripartita var. mollissima, P. tarminiana y P. mixta) y sus híbridos en el Valle del Cauca (Colombia)

Se estudió la variación morfológica entre ocho accesiones de las tres principales especies de curubas cultivadas y silvestres del Valle del Cauca, Passiflora tripartita var. mollissima (curuba de Castilla), Passiflora tarminiana (curuba india) y Passiflora mixta (curuba de monte) y 11 de sus híbridos, usando el análisis de componentes principales y el método de clasificación del vecino más próximo en 105 caracteres cualitativos y cuantitativos. Siete componentes principales explican 84% de la varianza total. Las clasificaciones sobre los caracteres cualitativos y cuantitativos muestran una clara agrupación por especie. Dentro de P. mixta, se distinguen un tipo poco pubescente, representativo de las plantas silvestres más comunes, y un tipo muy pubescente, con caracteres de domesticación como frutos amarillentos de pulpa colorida, y con una mayor variación morfológica. La clasificación de estos últimos individuos sugiere una introgresión entre P. mixta y Passiflora tripartita var. mollissima. Los híbridos ocupan una posición intermedia entre las especies parentales, pero se diferencian claramente según la dirección del cruzamiento, revelando un efecto maternal sobre la herencia de los caracteres vegetativos y florales. Los primeros análisis del fruto muestran características intermedias en cuanto a forma, color y tolerancia a la antracnosis.

Communicating geomorphology: global challenges for the twenty-first century

The British Society for Geomorphology (BSG), established as the British Geomorphological Research Group (BGRG) in 1960, is considering how best to represent geomorphology and geomorphologists in the light of recent changes in the nature of communication. These changes provide the BSG and other academic societies with challenges and opportunities. Seven drivers of communication change are outlined: the changing position of geomorphology in higher education, the nature of academic interaction, the means of communication available, a transformation in the nature of geomorphological research, changes in funding support, the government role in resource allocation, and developments in quantifying international research impact. Challenges arising from changing communications are identified as occurring beyond the `academy', in the nature of publication within the `academy', and associated with meetings of the `academy'. Although national societies now have to contemplate significantly different purposes to provide for their members than in the twentieth century, there are opportunities available that cannot be fulfilled by international organizations alone. Copyright (c) 2013 John Wiley & Sons, Ltd.

CISNE-P: a global scheduling oriented to NOW environments

In this work, we present an integral scheduling system for non-dedicated clusters, termed CISNE-P, which ensures the performance required by the local applications, while simultaneously allocating cluster resources to parallel jobs. Our approach solves the problem efficiently by using a social contract technique. This kind of technique is based on reserving computational resources, preserving a predetermined response time to local users. CISNE-P is a middleware which includes both a previously developed space-sharing job scheduler and a dynamic coscheduling system, a time sharing scheduling component. The experimentation performed in a Linux cluster shows that these two scheduler components are complementary and a good coordination improves global performance significantly. We also compare two different CISNE-P implementations: one developed inside the kernel, and the other entirely implemented in the user space.

Global Diversity Lines-A Five-Continent Reference Panel of Sequenced Drosophila melanogaster Strains.

Reference collections of multiple Drosophila lines with accumulating collections of "omics" data have proven especially valuable for the study of population genetics and complex trait genetics. Here we present a description of a resource collection of 84 strains of Drosophila melanogaster whose genome sequences were obtained after 12 generations of full-sib inbreeding. The initial rationale for this resource was to foster development of a systems biology platform for modeling metabolic regulation by the use of natural polymorphisms as perturbations. As reference lines, they are amenable to repeated phenotypic measurements, and already a large collection of metabolic traits have been assayed. Another key feature of these strains is their widespread geographic origin, coming from Beijing, Ithaca, Netherlands, Tasmania, and Zimbabwe. After obtaining 12.5× coverage of paired-end Illumina sequence reads, SNP and indel calls were made with the GATK platform. Thorough quality control was enabled by deep sequencing one line to >100×, and single-nucleotide polymorphisms and indels were validated using ddRAD-sequencing as an orthogonal platform. In addition, a series of preliminary population genetic tests were performed with these single-nucleotide polymorphism data for assessment of data quality. We found 83 segregating inversions among the lines, and as expected these were especially abundant in the African sample. We anticipate that this will make a useful addition to the set of reference D. melanogaster strains, thanks to its geographic structuring and unusually high level of genetic diversity.

Efeitos de reguladores vegetais no enraizamento de estacas caulinares de Poncirus trifoliata var. monstrosa (T. Ito)

O trabalho objetivou estudar os efeitos de reguladores vegetais no enraizamento de estacas caulinares de Flying Dragon [Poncirus trifoliata var. monstrosa (T. Ito)]. Na metade de cada estação do ano, ramos de citros foram coletados (4 experimentos), a partir dos quais foram retiradas estacas com 10 cm de comprimento com uma folha cortada ao meio. As bases das estacas foram tratadas com os seguintes reguladores vegetais na forma de talco: Testemunha (H2O); IBA 0,5%; NAA a 0,5%; IBA + ácido caféico a 0,5%, e NAA + ácido caféico 0,5%. As estacas foram plantadas em bandejas de isopor contendo fibra de coco e mantidas por três meses em câmara de nebulização. Os resultados mostraram que para a propagação desta espécie por estaquia, a coleta dos ramos deve ser no outono e que as mesmas sejam tratadas com a mistura de NAA + ácido caféico, ambos a 0,5%.

Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models

Background: Design of newly engineered microbial strains for biotechnological purposes would greatly benefit from the development of realistic mathematical models for the processes to be optimized. Such models can then be analyzed and, with the development and application of appropriate optimization techniques, one could identify the modifications that need to be made to the organism in order to achieve the desired biotechnological goal. As appropriate models to perform such an analysis are necessarily non-linear and typically non-convex, finding their global optimum is a challenging task. Canonical modeling techniques, such as Generalized Mass Action (GMA) models based on the power-law formalism, offer a possible solution to this problem because they have a mathematical structure that enables the development of specific algorithms for global optimization. Results: Based on the GMA canonical representation, we have developed in previous works a highly efficient optimization algorithm and a set of related strategies for understanding the evolution of adaptive responses in cellular metabolism. Here, we explore the possibility of recasting kinetic non-linear models into an equivalent GMA model, so that global optimization on the recast GMA model can be performed. With this technique, optimization is greatly facilitated and the results are transposable to the original non-linear problem. This procedure is straightforward for a particular class of non-linear models known as Saturable and Cooperative (SC) models that extend the power-law formalism to deal with saturation and cooperativity. Conclusions: Our results show that recasting non-linear kinetic models into GMA models is indeed an appropriate strategy that helps overcoming some of the numerical difficulties that arise during the global optimization task.

The TREAT-NMD DMD Global Database: Analysis of More than 7,000 Duchenne Muscular Dystrophy Mutations.

Analyzing the type and frequency of patient-specific mutations that give rise to Duchenne muscular dystrophy (DMD) is an invaluable tool for diagnostics, basic scientific research, trial planning, and improved clinical care. Locus-specific databases allow for the collection, organization, storage, and analysis of genetic variants of disease. Here, we describe the development and analysis of the TREAT-NMD DMD Global database (http://umd.be/TREAT_DMD/). We analyzed genetic data for 7,149 DMD mutations held within the database. A total of 5,682 large mutations were observed (80% of total mutations), of which 4,894 (86%) were deletions (1 exon or larger) and 784 (14%) were duplications (1 exon or larger). There were 1,445 small mutations (smaller than 1 exon, 20% of all mutations), of which 358 (25%) were small deletions and 132 (9%) small insertions and 199 (14%) affected the splice sites. Point mutations totalled 756 (52% of small mutations) with 726 (50%) nonsense mutations and 30 (2%) missense mutations. Finally, 22 (0.3%) mid-intronic mutations were observed. In addition, mutations were identified within the database that would potentially benefit from novel genetic therapies for DMD including stop codon read-through therapies (10% of total mutations) and exon skipping therapy (80% of deletions and 55% of total mutations).

Caracterização química da amêndoa de coquinho-azedo (Butia capitata var capitata)

A palmeira Butia capitata var capitata produz o coquinho-azedo, fruto de odor agradável e penetrante, cuja polpa é aproveitada para a produção de um suco saboroso na região norte de Minas Gerais. As sementes apresentam uma amêndoa cuja exploração ainda é bastante limitada. O objetivo deste trabalho foi determinar a composição da amêndoa do coquinho-azedo, visando a avaliar suas possibilidades de uso. Na amêndoa, a composição química (umidade, proteínas, lipídios, cinzas e fibras) foi determinada por métodos gravimétricos. Os teores dos principais minerais foram avaliados por espectrofotometria de emissão atômica com fonte de plasma indutivo, e a composição dos ácidos graxos presentes na gordura da semente foi determinada por cromatografia a gás. A amêndoa do coquinho-azedo apresentou 9,9 % de umidade e 57,8 % de lipídios totais, 25,8 % de fibra detergente neutro, 17,6 % de fibra detergente ácido e 1,6 % de cinzas em base seca. A gordura extraída da amêndoa de coquinho-azedo apresentou elevados teores de ácido láurico (42,1 %), que foi seguido pelo ácido oléico (16,9 %). Predominaram os ácidos graxos saturados (78,9 %), principalmente os de cadeia média (C6-C12).

Identifying the preferred subset of enzymatic profiles in nonlinear kinetic metabolic models via multiobjective global optimization and pareto filters

Optimization models in metabolic engineering and systems biology focus typically on optimizing a unique criterion, usually the synthesis rate of a metabolite of interest or the rate of growth. Connectivity and non-linear regulatory effects, however, make it necessary to consider multiple objectives in order to identify useful strategies that balance out different metabolic issues. This is a fundamental aspect, as optimization of maximum yield in a given condition may involve unrealistic values in other key processes. Due to the difficulties associated with detailed non-linear models, analysis using stoichiometric descriptions and linear optimization methods have become rather popular in systems biology. However, despite being useful, these approaches fail in capturing the intrinsic nonlinear nature of the underlying metabolic systems and the regulatory signals involved. Targeting more complex biological systems requires the application of global optimization methods to non-linear representations. In this work we address the multi-objective global optimization of metabolic networks that are described by a special class of models based on the power-law formalism: the generalized mass action (GMA) representation. Our goal is to develop global optimization methods capable of efficiently dealing with several biological criteria simultaneously. In order to overcome the numerical difficulties of dealing with multiple criteria in the optimization, we propose a heuristic approach based on the epsilon constraint method that reduces the computational burden of generating a set of Pareto optimal alternatives, each achieving a unique combination of objectives values. To facilitate the post-optimal analysis of these solutions and narrow down their number prior to being tested in the laboratory, we explore the use of Pareto filters that identify the preferred subset of enzymatic profiles. We demonstrate the usefulness of our approach by means of a case study that optimizes the ethanol production in the fermentation of Saccharomyces cerevisiae.

Caracterização da polpa do coquinho-azedo (Butia capitata var capitata)

O objetivo deste trabalho foi determinar a composição química, o teor de vitamina C, o valor pró-vitamina A e o teor de compostos fenólicos totais na polpa do coquinho-azedo (Butia capitata var capitata). Umidade, lipídeos, cinzas e fibras foram determinados por métodos gravimétricos; os minerais foram determinados por espectrometria de emissão atômica com fonte de plasma indutivo; o valor pró-vitamina A foi calculado através do teor de carotenóides; a vitamina C foi determinada por titulação com diclorofenolindofenol; os compostos fenólicos foram determinados pelo método de Folin-Ciocalteou, empregando ácido gálico e ácido tânico como padrões, e pelo método da vanilina, empregando catequina como padrão. A polpa, se comparada com outras frutas normalmente consumidas, apresentou elevado teor de óleo (2,5%), de fibra dietética (7,0%), de pró-vitamina A (146, 2RAE 100g-1), de vitamina C (53mg 100g-1), de compostos fenólicos (210mg de catequina, equivalente 100g-1; 116mg de ácido tânico, equivalente 100g-1) e de potássio (516mg 100g-1). O coquinho-azedo apresentou elevado potencial para enriquecer a alimentação da população local, especialmente como fonte de fibras, pró-vitamina A, vitamina C e potássio, a exemplo do que já vem sendo feito na merenda escolar no norte de Minas Gerais. Estes resultados demonstram o elevado valor de produtos oferecidos pelos pequenos agricultores, respaldando a importância cultural da espécie e valorizando a manutenção da variabilidade no cerrado.

The effect of information and communication technology on global paper consumption

The objective of this thesis is to find out how information and communication technology affects the global consumption of printing and writing papers. Another objective is to find out, whether there are differences between paper grades in these effects. The empirical analysis is conducted by linear regression analysis using three sets of country-level panel data from 1990-2006. Data set of newsprint contains 95 countries, data set of uncoated woodfree paper 61 countries and data set of coated mechanical paper 42 countries. The material is based on paper consumption data of RISI’s Industry Statistics Database and on the information and communication technology data of GMID-database. Results indicate that number of Internet users has statistically significant negative effect on the consumption of newsprint and on the consumption of coated mechanical paper and number of mobile telephone users has positive effect on the consumptions of these papers. Results also indicate that information and communication technologies have only small effect on consumption of uncoated woodfree paper or no significant effect at all, but these results are more uncertain to some extent.