Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.

DNA sequence variation has been associated with quantitative changes in molecular phenotypes such as gene expression, but its impact on chromatin states is poorly characterized. To understand the interplay between chromatin and genetic control of gene regulation, we quantified allelic variability in transcription factor binding, histone modifications, and gene expression within humans. We found abundant allelic specificity in chromatin and extensive local, short-range, and long-range allelic coordination among the studied molecular phenotypes. We observed genetic influence on most of these phenotypes, with histone modifications exhibiting strong context-dependent behavior. Our results implicate transcription factors as primary mediators of sequence-specific regulation of gene expression programs, with histone modifications frequently reflecting the primary regulatory event.

Online Robust 3D Mapping Using Structure from Motion Cues

This paper presents a complete solution for creating accurate 3D textured models from monocular video sequences. The methods are developed within the framework of sequential structure from motion, where a 3D model of the environment is maintained and updated as new visual information becomes available. The camera position is recovered by directly associating the 3D scene model with local image observations. Compared to standard structure from motion techniques, this approach decreases the error accumulation while increasing the robustness to scene occlusions and feature association failures. The obtained 3D information is used to generate high quality, composite visual maps of the scene (mosaics). The visual maps are used to create texture-mapped, realistic views of the scene

Assessing the Precision of Compositional Data in a Stratified Double Stage Cluster Sample: Application to the Swiss Earnings Structure Survey

Precision of released figures is not only an important quality feature of official statistics,it is also essential for a good understanding of the data. In this paper we show a casestudy of how precision could be conveyed if the multivariate nature of data has to betaken into account. In the official release of the Swiss earnings structure survey, the totalsalary is broken down into several wage components. We follow Aitchison's approachfor the analysis of compositional data, which is based on logratios of components. Wefirst present diferent multivariate analyses of the compositional data whereby the wagecomponents are broken down by economic activity classes. Then we propose a numberof ways to assess precision

Influence of anti-filarial chemotherapy strategies on the genetic structure of Wuchereria bancrofti populations

Lymphatic filarial (LF) parasites have been under anti-filarial drug pressure for more than half a century. Currently, annual mass drug administration (MDA) of diethylcarbamazine (DEC) or ivermectin in combination with albendazole (ALB) have been used globally to eliminate LF. Long-term chemotherapies exert significant pressure on the genetic structure of parasitic populations. We investigated the genetic variation among 210 Wuchereria bancrofti populations that were under three different chemotherapy strategies, namely MDA with DEC alone (group I, n = 74), MDA with DEC and ALB (group II, n = 60) and selective therapy (ST) with DEC (group III, n = 34) to understand the impact of these three drug regimens on the parasite genetic structure. Randomly amplified polymorphic DNA profiles were generated for the three groups of parasite populations; the gene diversity, gene flow and genetic distance values were determined and phylogenetic trees were constructed. Analysis of these parameters indicated that parasite populations under ST with a standard dose of DEC (group III) were genetically more diverse (0.2660) than parasite populations under MDA with DEC alone (group I, H = 0.2197) or with DEC + ALB (group II, H = 0.2317). These results indicate that the MDA may reduce the genetic diversity of W. bancrofti populations when compared to the genetic diversity of parasite populations under ST.

Response to comment on "the geometric structure of the brain fiber pathways".

In response to Catani et al., we show that corticospinal pathways adhere via sharp turns to two local grid orientations; that our studies have three times the diffusion resolution of those compared; and that the noted technical concerns, including crossing angles, do not challenge the evidence of mathematically specific geometric structure. Thus, the geometric thesis gives the best account of the available evidence.

Estimation of the lateral correlation structure of subsurface water content from surface-based ground-penetrating radar reflection images

Over the past decade, significant interest has been expressed in relating the spatial statistics of surface-based reflection ground-penetrating radar (GPR) data to those of the imaged subsurface volume. A primary motivation for this work is that changes in the radar wave velocity, which largely control the character of the observed data, are expected to be related to corresponding changes in subsurface water content. Although previous work has indeed indicated that the spatial statistics of GPR images are linked to those of the water content distribution of the probed region, a viable method for quantitatively analyzing the GPR data and solving the corresponding inverse problem has not yet been presented. Here we address this issue by first deriving a relationship between the 2-D autocorrelation of a water content distribution and that of the corresponding GPR reflection image. We then show how a Bayesian inversion strategy based on Markov chain Monte Carlo sampling can be used to estimate the posterior distribution of subsurface correlation model parameters that are consistent with the GPR data. Our results indicate that if the underlying assumptions are valid and we possess adequate prior knowledge regarding the water content distribution, in particular its vertical variability, this methodology allows not only for the reliable recovery of lateral correlation model parameters but also for estimates of parameter uncertainties. In the case where prior knowledge regarding the vertical variability of water content is not available, the results show that the methodology still reliably recovers the aspect ratio of the heterogeneity.

Les enjeux spatiaux et sociaux d'une dynamique interethnique en transition dans les quartiers de centre-ville. La construction des diverses formes de représentation dans la manière de définir un quartier de Nice.

Résumé Cette thèse de doctorat se fixe comme objectif général de définir la spécificité d'un espace urbain situé en centre-ville à travers sa dynamique sociale et interethnique. Il s'agit de relever les différentes formes et manifestations ethniques, mais également de comprendre la manière dont est vécue cette socialité, tout en tenant compte du contexte urbain dans lequel elles se situent. La particularité de ce travail est le fait de proposer une démarche alliant deux disciplines à savoir la géographie et la sociologie, dans le but de proposer une recherche transdisciplinaire, avec comme conséquence la mise en oeuvre d'une démarche commune nourrie des deux disciplines. Les quartiers ethniques situés en centre-ville ne se présentent pas comme des espaces figés, puisque des changements fréquents sont observés aussi bien au niveau de leur population que de l'affectation des locaux commerciaux et des logements. Ils semblent davantage se caractériser comme des « espaces à l'avenir indéterminé » dans le sens où leur avenir aussi bien au niveau de leur structure urbaine que de leurs rapports sociaux ne peut être prévisible et qu'ils sont par ailleurs susceptibles d'être soumis à de nombreux changements, d'où l'idée également d' « espaces en mutations ». Pour aborder ces thématiques de recherche, nous avons opté pour une étude fondée sur le principe de la représentation et de l'une des formes essentielles à travers lesquelles elles se produisent et se manifestent, à savoir les images. Cette recherche privilégie ainsi une analyse dynamique du phénomène interethnique, l'inscrivant dans le courant constructiviste qui s'intéresse notamment à l'étude des pratiques des acteurs sociaux et leurs représentations, dans le sens qu'elles sont le fruit d'une construction sociale. Dans ce type de démarche analytique, il s'agit de prendre en considération à la fois l'analyse du chercheur et la réalité objective et subjective du vécu des acteurs urbains qui regroupent les riverains, les commerçants, les membres associatifs, les politiques et les médias. C'est justement l'association de ces deux approches qui permet de définir un quartier urbain. Abstract "The spatial and social stakes of an interethnic dynamics in transition in the downtown area. The construction of the various forms of representations in order to define an urban quarter in Nice" The general objective of this PHD is to define the specificity of an urban space located in the downtown area with social and interethnic dynamics. Specifically the diverse ethnic form and sign to include the understanding mariner where society has lived in a specific urban context. The particularity of this work is to advance an analytic method using two disciplines: geography and sociology, in order to bring up a transdisciplinarian research with a common method. The ethnic quarters in the inner-city area are not presented as fixed spaces, since frequent changes were observed in the population level and at the allotment level of the commercial premises and the lodgings. Defined as "undetermined future spaces" as their future in the urban structure or the social relations can not be foresee and are supposed to be subjective to many changes. Therefore speaking of "mutations spaces". The option of this type of thematic research is the study of the principle of representation and essential form which shows and produces the images. Research promotes a dynamic analyses of the interethnic phenomena, inside the constructivist which is focused the practices of social actors, their own representations, and products of a social construction. The production of analytical approach is necessary in order to consider the analyses of the research worker and the objective and subjective reality of the life of the urban actors. It gathers the residents, tradesmen, members of associations, politicians and the press. The association of these types of approach define a urban quarter.