Spatial analysis of geometric design consistency and road sight distance

Because of the high number of crashes occurring on highways, it is necessary to intensify the search for new tools that help in understanding their causes. This research explores the use of a geographic information system (GIS) for an integrated analysis, taking into account two accident-related factors: design consistency (DC) (based on vehicle speed) and available sight distance (ASD) (based on visibility). Both factors require specific GIS software add-ins, which are explained. Digital terrain models (DTMs), vehicle paths, road centerlines, a speed prediction model, and crash data are integrated in the GIS. The usefulness of this approach has been assessed through a study of more than 500 crashes. From a regularly spaced grid, the terrain (bare ground) has been modeled through a triangulated irregular network (TIN). The length of the roads analyzed is greater than 100 km. Results have shown that DC and ASD could be related to crashes in approximately 4% of cases. In order to illustrate the potential of GIS, two crashes are fully analyzed: a car rollover after running off road on the right side and a rear-end collision of two moving vehicles. Although this procedure uses two software add-ins that are available only for ArcGIS, the study gives a practical demonstration of the suitability of GIS for conducting integrated studies of road safety.

Anomalous Consistency in Mild Cognitive Impairment: A Complex Networks Approach

Increased variability in performance has been associated with the emergence of several neurological and psychiatric pathologies. However, whether and how consistency of neuronal activity may also be indicative of an underlying pathology is still poorly understood. Here we propose a novel method for evaluating consistency from non-invasive brain recordings. We evaluate the consistency of the cortical activity recorded with magnetoencephalography in a group of subjects diagnosed with Mild Cognitive Impairment (MCI), a condition sometimes prodromal of dementia, during the execution of a memory task. We use metrics coming from nonlinear dynamics to evaluate the consistency of cortical regions. A representation known as parenclitic networks is constructed, where atypical features are endowed with a network structure, the topological properties of which can be studied at various scales. Pathological conditions correspond to strongly heterogeneous networks, whereas typical or normative conditions are characterized by sparsely connected networks with homogeneous nodes. The analysis of this kind of networks allows identifying the extent to which consistency is affected in the MCI group and the focal points where MCI is especially severe. To the best of our knowledge, these results represent the first attempt at evaluating the consistency of brain functional activity using complex networks theory.

Analysis of perimeter recombination in the subcells of GaInP/GaAs/Ge triple-junction solar cells

This paper studies the recombination at the perimeter in the subcells that constitute a GaInP/GaAs/Ge lattice-matched triple-junction solar cell. For that, diodes of different sizes and consequently different perimeter/area ratios have been manufactured in single-junction solar cells resembling the subcells in a triple-junction solar cell. It has been found that neither in GaInP nor in Ge solar cells the recombination at the perimeter is significant in devices as small as 500 μm × 500μm(2.5 ⋅ 10 − 3 cm2) in GaInP and 250μm  × 250μm (6.25 ⋅ 10 − 4cm2) in Ge. However, in GaAs, the recombination at the perimeter is not negligible at low voltages even in devices as large as 1cm2, and it is the main limiting recombination factor in the open circuit voltage even at high concentrations in solar cells of 250 μm  × 250μm (6.25 ⋅ 10 − 4 cm2) or smaller. Therefore, the recombination at the perimeter in GaAs should be taken into account when optimizing triple-junction solar cells.

La construcción del espacio litoral : el caso de la costa de Cartagena

El litoral ha constituido a lo largo de la historia una importante fuente de recursos económicos además de un punto estratégico para la defensa del territorio. El comercio, la pesca o la industria de la sal han propiciado la formación de poblaciones y ciudades al borde del mar. La costa funcionó como un ámbito defensivo, peligroso e insalubre durante siglos donde el mar modulaba el frente costero sin grandes interacciones con un entorno prácticamente deshabitado. A mediados del siglo XIX, las innovaciones técnicas y la pacificación definitiva del Mediterráneo permiten poner en valor sus características naturales y de oportunidad. Sin perder del todo su valor defensivo, el litoral resurge como recurso productivo y como lugar de ocio y disfrute de la población. El valor estratégico de la costa quedará también reflejado en el marco normativo. El derecho civil moderno recuperará el concepto de Dominio público Marítimo Terrestre a través de la Ley de Aguas de 1866 que regulará también los usos y las limitaciones en la propiedad privada litoral. Desde ese momento, las transformaciones económicas, sociales, jurídicas y ambientales van a provocar un cambio significativo en la relación entre la sociedad y la costa que dará paso a la construcción del espacio litoral que hemos heredado. Desde la triple perspectiva del litoral como sistema físico ambiental, sistema económico, productivo y cultural, y sistema administrativo y legal, el principal objetivo de la tesis será reconstruir el proceso de transformación del litoral consecuencia de la evolución en la forma de producción del espacio, de área defensiva a recurso productivo, y desde mediados del siglo XIX hasta principios del siglo XXI. Sin embargo, la construcción del litoral no ha sido homogénea ni constante a lo largo del tiempo. Ha estado sujeta a los distintos vaivenes económicos y sociales pero también a los cambios en el modelo territorial definido por el marco legal vigente, así como a los reajustes del propio sistema físico. Como instrumento sociopolítico, el marco legal regula las presiones del sistema económico sobre el medio, apostando por una visión frente a otra, y posibilitando el grado de transformación final. Así, el conocimiento sobre el territorio en el que se interviene y la definición del modelo de litoral por parte de los poderes públicos irán configurando el espacio físico, económico y social desarrollado en la costa. Para la reconstrucción del proceso de construcción del litoral, la tesis define cuatro fases diferentes y aplica las hipótesis y la metodología a la costa de Cartagena. Se presenta gráficamente la evolución en los tres sistemas en cada una de las fases, y se recompone el relato histórico a través de los hitos más relevantes para el proceso. En cada una de las fases, el nuevo modelo intentará dar respuesta a todo aquello que no funcionó o se quedó a medias en el periodo anterior. Las crisis económicas provocan la ralentización de la actividad productiva y, consecuentemente, de las transformaciones en el territorio. Servirán para establecer, en principio, un cambio de paradigma en la lectura y gestión del litoral que acabará traduciéndose en un nuevo texto legislativo en materia de costas (1969, 1988 y 2013). La reforma de la normativa responde a una nueva forma de entender, ordenar, gestionar e intervenir en el territorio, donde se modulan las pautas pero también la intensidad en la intervención. Pero nace condicionada por el litoral heredado: los derechos generados durante la vigencia del marco legal anterior; el modelo económico y sus presiones y expectativas sobre el litoral; y el medio físico en el que se acumulan los procesos de degradación no resueltos y los nuevos riesgos. Así, las conclusiones de la tesis ponen de manifiesto la necesidad de una visión compleja e integral sobre el litoral, en la que el urbanismo y la ordenación del territorio serán fundamentales para afrontar los nuevos retos en su construcción a futuro. ABSTRACT The littoral has been throughout history an important source of economic resources and a strategic point for the defense of territory. Trade, fishing or salt industry have led to the formation of towns and cities on the edge of the sea. The coast served as a defensive, dangerous and unhealthy place where the sea modulated for centuries the waterfront without major interactions with a virtually uninhabited environment. In the mid-nineteenth century, technical innovations and the final pacification of the Mediterranean allowed to value its natural features and opportunities. Without entirely losing its defensive value, the coast emerges as a productive resource and as a place of leisure and enjoyment of people. The strategic value of the coast will also be reflected in the legal framework. The concept of maritime-terrestrial public domain will be recovered by the modern civil law and the law of waters of 1866 governs the uses and limitations of private ownership of the coast. Since then, the economic, social, legal and environmental changes will to cause a significant change in the relationship between society and the coast that will give way to the construction of littoral space inherited. From the triple perspective of the littoral as a physical environmental system, an economic, productive and cultural system, and an administrative and legal system, the main objective of the thesis is to rebuild its process of transformation, as a result of the evolution in the way that space is produced, from defensive zone to productive resource, and from the middle of the nineteenth century until the beginning of the twenty-first century. However, the construction of the coast has not been uniform nor constant over time. It has been subject to different economic and social fluctuations and also to changes in the territorial model defined by the legal framework in force, as well as to readjustments of the physical system itself. As socio-political instrument, the legal framework regulates the pressure of the economic system on the environment, it bets on a vision over another and facilitates the final degree of transformation. Thus, the knowledge on the territory that is being intervened and the definition of the model of shoreline by public authorities will configure the physical, economic and social space developed on the coast. For the reconstruction of the littoral building process, the thesis defines four different phases and applies the hypothesis and methodology to the coast of Cartagena. It introduces graphically the evolution of the three systems in each of the phases and it recomposes the historical account through of the most important milestones for the process. In each phase, the new model will attempt to answer everything that did not work or was half in the previous period. Economic crises cause a slowdown in productive activity and, consequently, in the changes of territory. They serve to establish, in principle, a paradigm shift for reading and managing the littoral, eventually resulting in new legal texts on coasts matter (1969, 1988 and 2013). The reform of legislation responds to a new way for understanding, arranging, managing and intervening on the territory, where the guidelines and also the intervention intensity are modulated. But it is born conditioned by the inherited coast: the rights generated under previous legal framework; the economic model and its pressures and expectations on the littoral; and the physical environment which accumulates degradation processes unresolved and new risks. Thus, the thesis conclusions highlight the need for a complex and comprehensive view on the littoral, where urban planning and land-use planning will be key to meet the future challenges in its construction.

Análisis cinemático de algunos aspectos técnicos del triple salto

Las circunstancias me han decidido a realizar este trabajo, que tiene su origen en motivaciones personales. Así, por haber hecho la especialidad de atletismo y la gran afición que a ella tengo, más el enorme interés que tengo por la biomecánica, vino a mi mente la posibilidad de hacer la tesina sobre biomecánica de atletismo. Con este simple planteamiento concreté a quien orienta este trabajo. Después vino la revisión bibliográfica y las posibilidades en cada especialidad atlética. Quería analizar la técnica de algún movimiento en algunas de las especialidades atléticas, luego la técnica debía de ser determinante del resultado. Haciendo matizaciones sobre esto con el director de tesina determinamos que tenía que ser algún movimiento rápido. Empezó la eliminación de las especialidades, unas por estar ya estudiadas, otras por ser poco determinantes de la técnica, etc. Así hasta quedarme con la especialidad de t riple salto. No obstante en una de las clases de maestría de atletismo que dirige el profesor D. Carlos Álvarez del Villar, el triple salto había sido objeto de discusión biomecánica e hizo que me decidiera definitivamente a realizar el presente trabajo. Había diferentes formas de ejecutar el salto triple y con todas ellas se conseguían buenos resultados. Sobre el tema tenía material para trabajar y por la poca información bibliográfica que había sobre ello me daba la impresión de que era una mina sin explotar. Ahora y cuando el trabajo ya está terminado tengo la impresión de que estoy empezando a aprender la inmensa área que comprende la biomecánica y que el trabajo realizado no es más que la aportación de unos datos para, a partir de ahí. seguir trabajando. Es muy posible que continúe en este campo para futuras investigaciones, ya que como he dicho goza de grandes atractivos para mi. Antes de dar paso a la exposición del trabajo, quiero agradecer la gran ayuda prestada por todos los colaboradores, y muy especialmente al profesor D. Fernando Vizcaíno, quienes con su ánimo, ayuda y orientaciones en los momentos difíciles del trabajo, ha sido posible la culminación del mismo. Agradezco igualmente la colaboración especial de la Real Federación Española de Atletismo, sin cuya ayuda no hubiera siclo posible la realización de las películas.

CASO COCAMAR/PR UMA ANÁLISE DA DISSEMINAÇÃO DO CONHECIMENTO

A presente pesquisa propõe um estudo teórico-empírico em torno da gestão do conhecimento, tendo como recorte o processo de disseminação do conhecimento e a coerência entre o discurso e a prática do princípio cooperativista (educação, formação e informação) como diferenciador na gestão do conhecimento e no modelo organizacional cooperativista. O estudo destina-se a responder três questões: a) como ocorre o processo de disseminação do conhecimento em organizações cooperativas; b) qual a percepção dos colaboradores em relação ao processo de disseminação do conhecimento; e c) como a organização cooperativa investe no desenvolvimento de seu capital intelectual a partir do princípio cooperativista: educação, formação e informação. Assim, o objetivo geral é verificar o processo do conhecimento gestado na cooperativa COCAMAR- PR a partir do princípio cooperativista: educação, formação e informação, enquanto os objetivos específicos foram: levantar como ocorre o processo de disseminação do conhecimento a partir do princípio cooperativista educação, formação e informação ; identificar a percepção dos colabores em relação ao processo de disseminação do conhecimento; e verificar como o processo de disseminação do conhecimento atende às prerrogativas do princípio cooperativista educação, formação e informação . A metodologia escolhida é o estudo de caso, em que se estuda uma organização cooperativa localizada na cidade de Maringá, Estado Paraná. A pesquisa realizada caracteriza-se como um estudo de caso, exploratória e descritiva. Os resultados auferidos na pesquisa pretendem demonstrar o distanciamento da cooperativa em estudo de um de seus princípios fundamentais, embora possua um programa intensivo de capacitação profissional.(AU)

CASO COCAMAR/PR UMA ANÁLISE DA DISSEMINAÇÃO DO CONHECIMENTO

A presente pesquisa propõe um estudo teórico-empírico em torno da gestão do conhecimento, tendo como recorte o processo de disseminação do conhecimento e a coerência entre o discurso e a prática do princípio cooperativista (educação, formação e informação) como diferenciador na gestão do conhecimento e no modelo organizacional cooperativista. O estudo destina-se a responder três questões: a) como ocorre o processo de disseminação do conhecimento em organizações cooperativas; b) qual a percepção dos colaboradores em relação ao processo de disseminação do conhecimento; e c) como a organização cooperativa investe no desenvolvimento de seu capital intelectual a partir do princípio cooperativista: educação, formação e informação. Assim, o objetivo geral é verificar o processo do conhecimento gestado na cooperativa COCAMAR- PR a partir do princípio cooperativista: educação, formação e informação, enquanto os objetivos específicos foram: levantar como ocorre o processo de disseminação do conhecimento a partir do princípio cooperativista educação, formação e informação ; identificar a percepção dos colabores em relação ao processo de disseminação do conhecimento; e verificar como o processo de disseminação do conhecimento atende às prerrogativas do princípio cooperativista educação, formação e informação . A metodologia escolhida é o estudo de caso, em que se estuda uma organização cooperativa localizada na cidade de Maringá, Estado Paraná. A pesquisa realizada caracteriza-se como um estudo de caso, exploratória e descritiva. Os resultados auferidos na pesquisa pretendem demonstrar o distanciamento da cooperativa em estudo de um de seus princípios fundamentais, embora possua um programa intensivo de capacitação profissional.(AU)

The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small

In the maximum parsimony (MP) and minimum evolution (ME) methods of phylogenetic inference, evolutionary trees are constructed by searching for the topology that shows the minimum number of mutational changes required (M) and the smallest sum of branch lengths (S), respectively, whereas in the maximum likelihood (ML) method the topology showing the highest maximum likelihood (A) of observing a given data set is chosen. However, the theoretical basis of the optimization principle remains unclear. We therefore examined the relationships of M, S, and A for the MP, ME, and ML trees with those for the true tree by using computer simulation. The results show that M and S are generally greater for the true tree than for the MP and ME trees when the number of nucleotides examined (n) is relatively small, whereas A is generally lower for the true tree than for the ML tree. This finding indicates that the optimization principle tends to give incorrect topologies when n is small. To deal with this disturbing property of the optimization principle, we suggest that more attention should be given to testing the statistical reliability of an estimated tree rather than to finding the optimal tree with excessive efforts. When a reliability test is conducted, simplified MP, ME, and ML algorithms such as the neighbor-joining method generally give conclusions about phylogenetic inference very similar to those obtained by the more extensive tree search algorithms.

Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries

Transport of peptides across the membrane of the endoplasmic reticulum for assembly with MHC class I molecules is an essential step in antigen presentation to cytotoxic T cells. This task is performed by the major histocompatibility complex-encoded transporter associated with antigen processing (TAP). Using a combinatorial approach we have analyzed the substrate specificity of human TAP at high resolution and in the absence of any given sequence context, revealing the contribution of each peptide residue in stabilizing binding to TAP. Human TAP was found to be highly selective with peptide affinities covering at least three orders of magnitude. Interestingly, the selectivity is not equally distributed over the substrate. Only the N-terminal three positions and the C-terminal residue are critical, whereas effects from other peptide positions are negligible. A major influence from the peptide backbone was uncovered by peptide scans and libraries containing d amino acids. Again, independent of peptide length, critical positions were clustered near the peptide termini. These approaches demonstrate that human TAP is selective, with residues determining the affinity located in distinct regions, and point to the role of the peptide backbone in binding to TAP. This binding mode of TAP has implications in an optimized repertoire selection and in a coevolution with the major histocompatibility complex/T cell receptor complex.

Raman spectral evidence for hydration forces between collagen triple helices

Hydration forces are thought to result from the energetic cost of water rearrangement near macromolecular surfaces. Raman spectra, collected on the same collagen samples on which these forces were measured, reveal a continuous change in water hydrogen-bonding structure as a function of separation between collagen triple helices. The varying spectral parameters track the force-distance curve. The energetic cost of water “restructuring,” estimated from the spectra, is consistent with the measured energy of intermolecular interaction. These correlations support the idea that the change in water structure underlies the exponentially varying forces seen in this system at least over the 13–18-Å range of interaxial separations.

TROSY in triple-resonance experiments: New perspectives for sequential NMR assignment of large proteins

The NMR assignment of 13C, 15N-labeled proteins with the use of triple resonance experiments is limited to molecular weights below ∼25,000 Daltons, mainly because of low sensitivity due to rapid transverse nuclear spin relaxation during the evolution and recording periods. For experiments that exclusively correlate the amide proton (1HN), the amide nitrogen (15N), and 13C atoms, this size limit has been previously extended by additional labeling with deuterium (2H). The present paper shows that the implementation of transverse relaxation-optimized spectroscopy ([15N,1H]-TROSY) into triple resonance experiments results in several-fold improved sensitivity for 2H/13C/15N-labeled proteins and approximately twofold sensitivity gain for 13C/15N-labeled proteins. Pulse schemes and spectra recorded with deuterated and protonated proteins are presented for the [15N, 1H]-TROSY-HNCA and [15N, 1H]-TROSY-HNCO experiments. A theoretical analysis of the HNCA experiment shows that the primary TROSY effect is on the transverse relaxation of 15N, which is only little affected by deuteration, and predicts sensitivity enhancements that are in close agreement with the experimental data.

The central structural feature of the membrane fusion protein subunit from the Ebola virus glycoprotein is a long triple-stranded coiled coil

The ectodomain of the Ebola virus Gp2 glycoprotein was solubilized with a trimeric, isoleucine zipper derived from GCN4 (pIIGCN4) in place of the hydrophobic fusion peptide at the N terminus. This chimeric molecule forms a trimeric, highly α-helical, and very thermostable molecule, as determined by chemical crosslinking and circular dichroism. Electron microscopy indicates that Gp2 folds into a rod-like structure like influenza HA2 and HIV-1 gp41, providing further evidence that viral fusion proteins from diverse families such as Orthomyxoviridae (Influenza), Retroviridae (HIV-1), and Filoviridae (Ebola) share common structural features, and suggesting a common membrane fusion mechanism.

Protein-free parallel triple-stranded DNA complex formation

A 14 nt DNA sequence 5′-AGAATGTGGCAAAG-3′ from the zinc finger repeat of the human KRAB zinc finger protein gene ZNF91 bearing the intercalator 2-methoxy,6-chloro,9-amino acridine (Acr) attached to the sugar–phosphate backbone in various positions has been shown to form a specific triple helix (triplex) with a 16 bp hairpin (intramolecular) or a two-stranded (intermolecular) duplex having the identical sequence in the same (parallel) orientation. Intramolecular targets with the identical sequence in the antiparallel orientation and a non-specific target sequence were tested as controls. Apparent binding constants for formation of the triplex were determined by quantitating electrophoretic band shifts. Binding of the single-stranded oligonucleotide probe sequence to the target led to an increase in the fluorescence anisotropy of acridine. The parallel orientation of the two identical sequence segments was confirmed by measurement of fluorescence resonance energy transfer between the acridine on the 5′-end of the probe strand as donor and BODIPY-Texas Red on the 3′-amino group of either strand of the target duplex as acceptor. There was full protection from OsO4-bipyridine modification of thymines in the probe strand of the triplex, in accordance with the presumed triplex formation, which excluded displacement of the homologous duplex strand by the probe–intercalator conjugate. The implications of these results for the existence of protein-independent parallel triplexes are discussed.

Detection of competing DNA structures by thermal gradient gel electrophoresis: from self-association to triple helix formation by (G,A)-containing oligonucleotides

Sequence-specific recognition of DNA can be achieved by triple helix-forming oligonucleotides that bind to the major groove of double-helical DNA. These oligonucleotides have been used as sequence-specific DNA ligands for various purposes, including sequence-specific gene regulation in the so-called ‘antigene strategy’. In particular, (G,A)-containing oligonucleotides can form stable triple helices under physiological conditions. However, triplex formation may be in competition with self-association of these oligonucleotides. For biological applications it would be interesting to identify the conditions under which one structure is favoured as compared to the other(s). Here we have directly studied competition between formation of a parallel (G,A) homoduplex and that of a triple helix by a 13 nt (G,A)-containing oligonucleotide. Temperature gradient gel electrophoresis allows simultaneous detection of competition between the two structures, because of their different temperature dependencies and gel electrophoretic mobilities, and characterisation of this competition.