Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height

Background: Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs).Results: The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length.Conclusions: This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with body size in taurine cattle (Bos primigenius taurus) also affect birth weight and size in zebu cattle (Bos primigenius indicus). © 2013 Utsunomiya et al.; licensee BioMed Central Ltd.

Genetic parameter estimates and principal component analysis of breeding values of reproduction and growth traits in female Canchim cattle

Phenotypic data from female Canchim beef cattle were used to obtain estimates of genetic parameters for reproduction and growth traits using a linear animal mixed model. In addition, relationships among animal estimated breeding values (EBVs) for these traits were explored using principal component analysis. The traits studied in female Canchim cattle were age at first calving (AFC), age at second calving (ASC), calving interval (CI), and bodyweight at 420 days of age (BW420). The heritability estimates for AFC, ASC, CI and BW420 were 0.03±0.01, 0.07±0.01, 0.06±0.02, and 0.24±0.02, respectively. The genetic correlations for AFC with ASC, AFC with CI, AFC with BW420, ASC with CI, ASC with BW420, and CI with BW420 were 0.87±0.07, 0.23±0.02, -0.15±0.01, 0.67±0.13, -0.07±0.13, and 0.02±0.14, respectively. Standardised EBVs for AFC, ASC and CI exhibited a high association with the first principal component, whereas the standardised EBV for BW420 was closely associated with the second principal component. The heritability estimates for AFC, ASC and CI suggest that these traits would respond slowly to selection. However, selection response could be enhanced by constructing selection indices based on the principal components. © CSIRO 2013.

Soil organic matter and physical attributes affected by crop rotation under no-till

Growing cover crops in systems under no tillage affects different pools of soil organic matter, and eventually soil physical attributes are modified. The objective of this study was to evaluate changes in soil organic matter and their relationship with soil physical attributes as affected by plant species grown in rotation with soybean [Glycine max (L.) Merr.] under no-till for 3 yr. Crop rotations included grain sorghum [Sorghum bicolor (L.) Moench], ruzigrass [Urochloa ruziziensis (R. Germ, and CM. Evard) Crins] and sorghum mixed with ruzigrass, all grown in fall/winter, followed by pearl millet [Pennisetum americanum (L.) Leeke], sunn hemp (Crotalaria juncea L.) and sorghum-sudangrass [S. bicolor × S. sudanense (Piper) Stapf] grown during the spring, plus a fallow check plot. Soybean was grown as the summer crop. Millet and sorghum-sudangrass cropped in spring showed higher root and shoot production as spring cropping. In fall/winter, sorghum mixed with ruzigrass yielded higher phytomass compared with sole cropping. Soil physical attributes and organic matter fractioning were positively affected by cropping millet and sorghum-sudangrass whereas intermediate effects were observed after sunn hemp. Maintaining fallow in spring had negative effects on soil organic matter and physical properties. Ruzigrass and sorghum mixed with ruzigrass cropped in fall/winter resulted in better soil quality. Spring cover crops were more efficient in changing soil bulk density, porosity, and aggregates down to 0 to 10 cm; on the other hand, fall/winter cropping showed significant effects on bulk density in the uppermost soil layer. Total C levels in soil were increased after a 3-yr rotation period due to poor initial physical conditions. Fractions of particulate organic C, microbial C, and C in macroaggregates were the most affected by crop rotations, and showed high relation with improved soil physical attributes (porosity, density, and aggregates larger than 2 mm). © Soil Science Society of America, All rights reserved.

Reconhecimento de palavras, nomeação de figuras e de palavras impressas em surdos implantados pré-linguais

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Extração semi-automática de rodovias no espaço-objeto: uso integrado de um estéreo par de imagens aéreas e um MDT

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Detecção de Paracoccidioides sp. em amostras ambientais aerossóis

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Características biométricas das sementes e descrição da resposta germinativa pelo modelo do tempo térmico em diferentes populações de Peltophorum dubium (Spreng.) Taub

Pós-graduação em Ciências Biológicas (Biologia Vegetal) - IBRC

Clonagem de oxidoesqualeno ciclases de Maytenus ilicifolia Mart. ex Reissek (CELASTRACEAE)

Pós-graduação em Biotecnologia - IQ

Morfometria da bacia hidrográfica do rio Bobo no Estado de Nariño, Colômbia

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Potencialidades de uso de imagens IKONOS/GEO para aplicações em áreas urbanas

Pós-graduação em Ciências Cartográficas - FCT

Lesões apendiculares em equinos Puro Sangue Ingleses no Jóquei Clube Brasileiro(Gávea/RJ): descrição e prevalência

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Relação entre o excesso de bases da dieta, sua manipulação mediante adição de cátions e anions e o pH urinário e equilíbrio ácido-básico de cães

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Relação entre o excesso de bases do alimento e o PH urinário de gatos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Avaliação da produtividade e demanda energética de duas cultivares de soja transgênica e uma não transgênica sob efeito dos preparos de solo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Comparação entre três critérios de amostragem para a avaliação da densidade básica da madeira de florestas implantadas de eucaliptos

Pós-graduação em Agronomia (Energia na Agricultura) - FCA