On some sampling-related frames in U-invariant spaces

This paper concerns the characterization as frames of some sequences in U-invariant spaces of a separable Hilbert space H where U denotes an unitary operator defined on H ; besides, the dual frames having the same form are also found. This general setting includes, in particular, shift-invariant or modulation-invariant subspaces in L2 (R), where these frames are intimately related to the generalized sampling problem. We also deal with some related perturbation problems. In so doing, we need that the unitary operator U belongs to a continuous group of unitary operators.

Extension of Euskalduna Conference Centre and Concert Hall: A Contemporary Application of Irregular Reciprocal Frames

Reciprocal frame structures, formed by a set of self-supported elements in a closed circuit, have long been used since antiquity to cover large spans with small elements. The roof structure of the Euskalduna conference centre and concert hall extension in Bilbao, covering an irregu- lar geometry of 3000 m2 with a maximum span of 45 m, presented an interesting opportunity to revisit the concept and to apply these classical systems. Furthermore, its analysis and develop- ment led to an interesting discussion on reciprocal frames. They showed great sensitivity of these systems to the local modification of a particular element, establishment of irregular load paths, mobilisation of almost the entire sys- tem when locally applying a punctual load and, finally, its large deformability. Besides, reciprocal frames present particular construction complexities and possibilities due to the moderate length of the structural elements, the predominance of shear-only connec- tions and the necessity of the entire system to be completely erected to guarantee its stability. Euskalduna extension, completed in 2012, is one of the largest and a very par- ticular case of irregular reciprocal frame structures built in the world. It shows the formal possibilities and potentiality of reciprocal frames to respond to free and irregular geometries.

A Compact Formula for the Derivative of a 3-D Rotation in Exponential Coordinates

We present a compact formula for the derivative of a 3-D rotation matrix with respect to its exponential coordinates. A geometric interpretation of the resulting expression is provided, as well as its agreement with other less-compact but better-known formulas. To the best of our knowledge, this simpler formula does not appear anywhere in the literature. We hope by providing this more compact expression to alleviate the common pressure to reluctantly resort to alternative representations in various computational applications simply as a means to avoid the complexity of differential analysis in exponential coordinates.

Book Review: Elastic Beams and Frames, by J. D. Renton

The book represents a very interesting example of the possibility to combine in a single publication basic theory of structures and quite advanced topics on the same subject. The author fulfills this objective in a reasonable size book, less than 400 pages divided into 15 chapters averaging 20 pages each plus 9 short appendices. A diskette is also included in the book. This diskette contains training as well practical executable programs on different aspects of structural analysis, such as cross-sections properties,general-purpose computer programs for the static, dynamic and stability analysis of simple bar structures, etc. The book figures are didactic and have been carefully drawn.

Compact duplexing for a 680-GHz radar using a waveguide orthomode transducer

A compact 680-GHz waveguide orthomode transducer (OMT) and circular horn combination has been designed, tested, and characterized in a radar transceiver's duplexer. The duplexing capability is implemented by a hybrid waveguide quasi optical solution, combining a linear polarization OMT and an external grating polarizer. Isolation between the OMT's orthogonal ports' flanges was measured with a vector network analyzer to exceed 33 dB over a >10% bandwidth between 630 and 710 GHz. Calibrated Y-factor measurements using a mixer attached to the OMT ports reveal losses through the transmit and receive paths that sum to an average of 4.7 dB of two-way loss over 660-690 GHz. This is consistent with radar sensitivity measurements comparing the new OMT/horn with a quasi-optical wire grid beam splitter. Moreover, the radar performance assessment validates the OMT as a suitable compact substitute of the wire grid for the JPL's short-range 680-GHz imaging radar.

Design and development of compact optical systems = Diseño y desarrollo de sistemas ópticos compactos

Esta tesis considera dos tipos de aplicaciones del diseño óptico: óptica formadora de imagen por un lado, y óptica anidólica (nonimaging) o no formadora de imagen, por otro. Las ópticas formadoras de imagen tienen como objetivo la obtención de imágenes de puntos del objeto en el plano de la imagen. Por su parte, la óptica anidólica, surgida del desarrollo de aplicaciones de concentración e iluminación, se centra en la transferencia de energía en forma de luz de forma eficiente. En general, son preferibles los diseños ópticos que den como resultado sistemas compactos, para ambos tipos de ópticas (formadora de imagen y anidólica). En el caso de los sistemas anidólicos, una óptica compacta permite tener costes de producción reducidos. Hay dos razones: (1) una óptica compacta presenta volúmenes reducidos, lo que significa que se necesita menos material para la producción en masa; (2) una óptica compacta es pequeña y ligera, lo que ahorra costes en el transporte. Para los sistemas ópticos de formación de imagen, además de las ventajas anteriores, una óptica compacta aumenta la portabilidad de los dispositivos, que es una gran ventaja en tecnologías de visualización portátiles, tales como cascos de realidad virtual (HMD del inglés Head Mounted Display). Esta tesis se centra por tanto en nuevos enfoques de diseño de sistemas ópticos compactos para aplicaciones tanto de formación de imagen, como anidólicas. Los colimadores son uno de los diseños clásicos dentro la óptica anidólica, y se pueden utilizar en aplicaciones fotovoltaicas y de iluminación. Hay varios enfoques a la hora de diseñar estos colimadores. Los diseños convencionales tienen una relación de aspecto mayor que 0.5. Con el fin de reducir la altura del colimador manteniendo el área de iluminación, esta tesis presenta un diseño de un colimador multicanal. En óptica formadora de imagen, las superficies asféricas y las superficies sin simetría de revolución (o freeform) son de gran utilidad de cara al control de las aberraciones de la imagen y para reducir el número y tamaño de los elementos ópticos. Debido al rápido desarrollo de sistemas de computación digital, los trazados de rayos se pueden realizar de forma rápida y sencilla para evaluar el rendimiento del sistema óptico analizado. Esto ha llevado a los diseños ópticos modernos a ser generados mediante el uso de diferentes técnicas de optimización multi-paramétricas. Estas técnicas requieren un buen diseño inicial como punto de partida para el diseño final, que será obtenido tras un proceso de optimización. Este proceso precisa un método de diseño directo para superficies asféricas y freeform que den como resultado un diseño cercano al óptimo. Un método de diseño basado en ecuaciones diferenciales se presenta en esta tesis para obtener un diseño óptico formado por una superficie freeform y dos superficies asféricas. Esta tesis consta de cinco capítulos. En Capítulo 1, se presentan los conceptos básicos de la óptica formadora de imagen y de la óptica anidólica, y se introducen las técnicas clásicas del diseño de las mismas. El Capítulo 2 describe el diseño de un colimador ultra-compacto. La relación de aspecto ultra-baja de este colimador se logra mediante el uso de una estructura multicanal. Se presentará su procedimiento de diseño, así como un prototipo fabricado y la caracterización del mismo. El Capítulo 3 describe los conceptos principales de la optimización de los sistemas ópticos: función de mérito y método de mínimos cuadrados amortiguados. La importancia de un buen punto de partida se demuestra mediante la presentación de un mismo ejemplo visto a través de diferentes enfoques de diseño. El método de las ecuaciones diferenciales se presenta como una herramienta ideal para obtener un buen punto de partida para la solución final. Además, diferentes técnicas de interpolación y representación de superficies asféricas y freeform se presentan para el procedimiento de optimización. El Capítulo 4 describe la aplicación del método de las ecuaciones diferenciales para un diseño de un sistema óptico de una sola superficie freeform. Algunos conceptos básicos de geometría diferencial son presentados para una mejor comprensión de la derivación de las ecuaciones diferenciales parciales. También se presenta un procedimiento de solución numérica. La condición inicial está elegida como un grado de libertad adicional para controlar la superficie donde se forma la imagen. Basado en este enfoque, un diseño anastigmático se puede obtener fácilmente y se utiliza como punto de partida para un ejemplo de diseño de un HMD con una única superficie reflectante. Después de la optimización, dicho diseño muestra mejor rendimiento. El Capítulo 5 describe el método de las ecuaciones diferenciales ampliado para diseños de dos superficies asféricas. Para diseños ópticos de una superficie, ni la superficie de imagen ni la correspondencia entre puntos del objeto y la imagen pueden ser prescritas. Con esta superficie adicional, la superficie de la imagen se puede prescribir. Esto conduce a un conjunto de tres ecuaciones diferenciales ordinarias implícitas. La solución numérica se puede obtener a través de cualquier software de cálculo numérico. Dicho procedimiento también se explica en este capítulo. Este método de diseño da como resultado una lente anastigmática, que se comparará con una lente aplanática. El diseño anastigmático converge mucho más rápido en la optimización y la solución final muestra un mejor rendimiento. ABSTRACT We will consider optical design from two points of view: imaging optics and nonimaging optics. Imaging optics focuses on the imaging of the points of the object. Nonimaging optics arose from the development of concentrators and illuminators, focuses on the transfer of light energy, and has wide applications in illumination and concentration photovoltaics. In general, compact optical systems are necessary for both imaging and nonimaging designs. For nonimaging optical systems, compact optics use to be important for reducing cost. The reasons are twofold: (1) compact optics is small in volume, which means less material is needed for mass-production; (2) compact optics is small in size and light in weight, which saves cost in transportation. For imaging optical systems, in addition to the above advantages, compact optics increases portability of devices as well, which contributes a lot to wearable display technologies such as Head Mounted Displays (HMD). This thesis presents novel design approaches of compact optical systems for both imaging and nonimaging applications. Collimator is a typical application of nonimaging optics in illumination, and can be used in concentration photovoltaics as well due to the reciprocity of light. There are several approaches for collimator designs. In general, all of these approaches have an aperture diameter to collimator height not greater than 2. In order to reduce the height of the collimator while maintaining the illumination area, a multichannel design is presented in this thesis. In imaging optics, aspheric and freeform surfaces are useful in controlling image aberrations and reducing the number and size of optical elements. Due to the rapid development of digital computing systems, ray tracing can be easily performed to evaluate the performance of optical system. This has led to the modern optical designs created by using different multi-parametric optimization techniques. These techniques require a good initial design to be a starting point so that the final design after optimization procedure can reach the optimum solution. This requires a direct design method for aspheric and freeform surface close to the optimum. A differential equation based design method is presented in this thesis to obtain single freeform and double aspheric surfaces. The thesis comprises of five chapters. In Chapter 1, basic concepts of imaging and nonimaging optics are presented and typical design techniques are introduced. Readers can obtain an understanding for the following chapters. Chapter 2 describes the design of ultra-compact collimator. The ultra-low aspect ratio of this collimator is achieved by using a multichannel structure. Its design procedure is presented together with a prototype and its evaluation. The ultra-compactness of the device has been approved. Chapter 3 describes the main concepts of optimizing optical systems: merit function and Damped Least-Squares method. The importance of a good starting point is demonstrated by presenting an example through different design approaches. The differential equation method is introduced as an ideal tool to obtain a good starting point for the final solution. Additionally, different interpolation and representation techniques for aspheric and freeform surface are presented for optimization procedure. Chapter 4 describes the application of differential equation method in the design of single freeform surface optical system. Basic concepts of differential geometry are presented for understanding the derivation of partial differential equations. A numerical solution procedure is also presented. The initial condition is chosen as an additional freedom to control the image surface. Based on this approach, anastigmatic designs can be readily obtained and is used as starting point for a single reflective surface HMD design example. After optimization, the evaluation shows better MTF. Chapter 5 describes the differential equation method extended to double aspheric surface designs. For single optical surface designs, neither image surface nor the mapping from object to image can be prescribed. With one more surface added, the image surface can be prescribed. This leads to a set of three implicit ordinary differential equations. Numerical solution can be obtained by MATLAB and its procedure is also explained. An anastigmatic lens is derived from this design method and compared with an aplanatic lens. The anastigmatic design converges much faster in optimization and the final solution shows better performance.

La influencia en el aislamiento acústicoa ruido aéreo de los aireadores en las ventanas compactas

En la actualidad, el crecimiento de la población urbana, el incremento de la demanda energética junto al desarrollo tecnológico impulsado en los últimos veinte años han originado un estudio y replanteamiento de los sistemas constructivos empleados. Como consecuencia se han establecido nuevos marcos normativos, marcando nuevos objetivos de confort y de demanda energética. En España, el Código Técnico de la Edificación (aprobado en el Real Decreto 314/2006 de 17 de Marzo) es el marco normativo que establece las exigencias que se deben cumplir al proyectar construir, usar, mantener y conservar los edificios, incluidas sus instalaciones, con el fin de asegurar la calidad, seguridad y salud del usuario, respetando en todo momento su entorno. Para asegurar el cumplimiento de las exigencias del Código Técnico de la Edificación (CTE), se han elaborado diferentes Documentos Básicos (DB). Entre ellos están los documentos básicos DB HR-Protección frente al ruido y el DB HS-Salubridad. En el DB HS 3 Calidad del aire interior, se establecen las condiciones que deben de adoptarse para que los recintos de los edificios se puedan ventilar adecuadamente, eliminando los contaminantes que se produzcan de forma habitual durante un uso normal de los edificios, de forma que se aporte un caudal suficiente de aire exterior y se garantice la extracción y expulsión del aire viciado por los contaminantes. En el apartado 3.1, Condiciones generales de los sistemas de ventilación, se indica que las viviendas deben disponer de un sistema general de ventilación donde el aire debe circular desde los locales secos a los húmedos. Para ello los comedores, los dormitorios y las salas de estar deben de disponer de aberturas de admisión, pudiéndose resolver esta cuestión técnica con diversas soluciones. El DB HR Protección frente al ruido del CTE, establece unos valores del aislamiento acústico a ruido aéreo, entre un recinto protegido y el exterior, en función del uso del edificio y del nivel sonoro continuo equivalente día, Ld de la zona donde se ubique el edificio. El hacer compatibles el cumplimiento de las exigencias de los dos Documentos Básicos anteriormente citados, origina algunas dificultades en los proyectos de edificación actuales. Los proyectistas tienen que recurrir en la mayoría de los casos a nuevos sistemas constructivos o duplicaciones de soluciones existentes, evitando la manipulación de los elementos de regulación de entrada de aire en las viviendas. El objetivo fundamental de la Tesis presentada es el estudio de los efectos que producen la colocación de sistemas de aireación permanente en el aislamiento acústico a ruido aéreo de las ventanas compactas. Se comprueba la influencia de cada uno de los componentes de la ventana compacta: perfiles, unidades de vidrio, sistema de apertura, cajón de persiana, persiana, aireadores, etc. en el aislamiento a ruido aéreo del sistema completo. Los ensayos acústicos se han realizado mediante dos métodos: conforme a la norma UNE-EN ISO 10140-2:2011 Medición en laboratorio del aislamiento acústico al ruido aéreo de los elementos de construcción y mediante intensimetría acústica acorde a la norma UNE-EN ISO 15186-1:2004 Medición del aislamiento acústico en los edificios y de los elementos de construcción utilizando intensidad sonora. Los resultados obtenidos podrán ser de gran utilidad para todos los profesionales que intervienen en el proceso edificatorio: arquitectos, ingenieros, instaladores, promotores, fabricantes de productos, etc., tanto en la obra nueva como en la rehabilitación. En un futuro, podrían incorporarse a los Catálogos y Documentos de Aplicación del CTE, así como a los nuevos programas informáticos de diseño y aislamiento acústico. Con el conocimiento adquirido y su aplicación, se contribuirá a la mejora de la calidad de una edificación más sostenible y eficiente. Se incrementará la productividad y la competitividad de los fabricantes de materiales y sistemas constructivos, aumentando el grado de satisfacción del usuario final con el consiguiente aumento de la calidad de vida de los ciudadanos. También se ampliará el conocimiento técnico de este tipo de sistemas y la compatibilidad entre las distintas exigencias marcadas por la normativa. ABSTRACT At present, the urban population growth, the increase of energy demand and the technological development in the last twenty years have led to a rethinking of the used building systems. As a result, new regulatory frameworks have been established, setting new goals of comfort and energy demand. In Spain, the Building Code, Código Técnico de la Edificación (CTE) (RD 314/2006 of March 17th) is the regulatory framework that establishes the requirements to be met by projecting, building, using, maintaining and preserving buildings, including its facilities in order to ensure the quality, safety and health of the user, always respecting the environment. To ensure compliance with the requirements of the CTE, different technical requirements Documentos básicos (DB) have been developed. Among them, are the DB-HR-Protection against noise and DB-HS-Health. In the DB-HS- part3, Indoor Air Quality, are set the conditions needed to be taken into consideration so that the building enclosures can be adequately ventilated, eliminating pollutants that occur regularly during normal use of the buildings, so that a sufficient airflow of outdoor is supplied and a removal and extraction of stale air pollutants is guaranteed. In section 3.1, General Terms of ventilation systems, is indicated that dwellings must have a general ventilation system where air can circulate from dry to wet enclosures. For this, dining rooms, bedrooms and living rooms should have air intake, being able to resolve this technical issue with various solutions. The DB-HR Protection against noise, provides sound insulation values of airborne sound transmission between a protected room and the outside, depending on the use of the building and the equivalent continuous sound level day, Ld, in the area where the building is located. Satisfying the requirements of the two requirements mentioned above causes some difficulties in current building project. Designers have to rely in most cases, to new construction elements or duplicate existing solutions, avoiding the manipulation of the air intakes elements. The main objective of this Thesis is the study of the effects of permanent intakes systems in the acoustic insulation against airborne noise transmission in compact windows. The influence of each of the components of the compact window is determined: frames, glass units, opening systems, shutter box, trickle vents, etc. in the airborne sound insulation of the entire system. The acoustic survey were performed using two methods: UNE-EN ISO 10140-2: 2011 Laboratory measurements of sound insulation of building elements and UNE-EN ISO 15186-1:2004 Measurement of sound insulation in buildings and of building elements using sound intensity. The obtained results may be useful for all professionals involved in the building process: architects, engineers, installers, developers, manufacturers, etc. in the new construction developments and in rehabilitation. In the future, it could be added to building catalogues and applications of the Spanish Building Code, as well as to the new design and sound insulation software. With the acquired knowledge and its application, there will be a contribution to improve the quality of a more sustainable and efficient construction. Productivity and competitiveness of manufacturers of building materials and components will improve, increasing the degree of satisfaction of the final user with a consequent increase in the quality of life of citizens. Technical knowledge of such systems and compatibility between the various requirements set by the legislation will also expand.

Cardiac arrest in rodents: Maximal duration compatible with a recovery of neuronal activity

We report here that during a permanent cardiac arrest, rodent brain tissue is “physiologically” preserved in situ in a particular quiescent state. This state is characterized by the absence of electrical activity and by a critical period of 5–6 hr during which brain tissue can be reactivated upon restoration of a simple energy (glucose/oxygen) supply. In rat brain slices prepared 1–6 hr after cardiac arrest and maintained in vitro for several hours, cells with normal morphological features, intrinsic membrane properties, and spontaneous synaptic activity were recorded from various brain regions. In addition to functional membrane channels, these neurons expressed mRNA, as revealed by single-cell reverse transcription–PCR, and could synthesize proteins de novo. Slices prepared after longer delays did not recover. In a guinea pig isolated whole-brain preparation that was cannulated and perfused with oxygenated saline 1–2 hr after cardiac arrest, cell activity and functional long-range synaptic connections could be restored although the electroencephalogram remained isoelectric. Perfusion of the isolated brain with the γ-aminobutyric acid A receptor antagonist picrotoxin, however, could induce self-sustained temporal lobe epilepsy. Thus, in rodents, the duration of cardiac arrest compatible with a short-term recovery of neuronal activity is much longer than previously expected. The analysis of the parameters that regulate this duration may bring new insights into the prevention of postischemic damages.

Folding protein models with a simple hydrophobic energy function: The fundamental importance of monomer inside/outside segregation

The present study explores a “hydrophobic” energy function for folding simulations of the protein lattice model. The contribution of each monomer to conformational energy is the product of its “hydrophobicity” and the number of contacts it makes, i.e., E(h⃗, c⃗) = −Σi=1N cihi = −(h⃗.c⃗) is the negative scalar product between two vectors in N-dimensional cartesian space: h⃗ = (h1, … , hN), which represents monomer hydrophobicities and is sequence-dependent; and c⃗ = (c1, … , cN), which represents the number of contacts made by each monomer and is conformation-dependent. A simple theoretical analysis shows that restrictions are imposed concomitantly on both sequences and native structures if the stability criterion for protein-like behavior is to be satisfied. Given a conformation with vector c⃗, the best sequence is a vector h⃗ on the direction upon which the projection of c⃗ − c̄⃗ is maximal, where c̄⃗ is the diagonal vector with components equal to c̄, the average number of contacts per monomer in the unfolded state. Best native conformations are suggested to be not maximally compact, as assumed in many studies, but the ones with largest variance of contacts among its monomers, i.e., with monomers tending to occupy completely buried or completely exposed positions. This inside/outside segregation is reflected on an apolar/polar distribution on the corresponding sequence. Monte Carlo simulations in two dimensions corroborate this general scheme. Sequences targeted to conformations with large contact variances folded cooperatively with thermodynamics of a two-state transition. Sequences targeted to maximally compact conformations, which have lower contact variance, were either found to have degenerate ground state or to fold with much lower cooperativity.

Chloroplast protein and centrosomal genes, a tRNA intron, and odd telomeres in an unusually compact eukaryotic genome, the cryptomonad nucleomorph

Cells of several major algal groups are evolutionary chimeras of two radically different eukaryotic cells. Most of these “cells within cells” lost the nucleus of the former algal endosymbiont. But after hundreds of millions of years cryptomonads still retain the nucleus of their former red algal endosymbiont as a tiny relict organelle, the nucleomorph, which has three minute linear chromosomes, but their function and the nature of their ends have been unclear. We report extensive cryptomonad nucleomorph sequences (68.5 kb), from one end of each of the three chromosomes of Guillardia theta. Telomeres of the nucleomorph chromosomes differ dramatically from those of other eukaryotes, being repeats of the 23-mer sequence (AG)7AAG6A, not a typical hexamer (commonly TTAGGG). The subterminal regions comprising the rRNA cistrons and one protein-coding gene are exactly repeated at all three chromosome ends. Gene density (one per 0.8 kb) is the highest for any cellular genome. None of the 38 protein-coding genes has spliceosomal introns, in marked contrast to the chlorarachniophyte nucleomorph. Most identified nucleomorph genes are for gene expression or protein degradation; histone, tubulin, and putatively centrosomal ranbpm genes are probably important for chromosome segregation. No genes for primary or secondary metabolism have been found. Two of the three tRNA genes have introns, one in a hitherto undescribed location. Intergenic regions are exceptionally short; three genes transcribed by two different RNA polymerases overlap their neighbors. The reported sequences encode two essential chloroplast proteins, FtsZ and rubredoxin, thus explaining why cryptomonad nucleomorphs persist.

Tight frames of k-plane ridgelets and the problem of representing objects that are smooth away from d-dimensional singularities in Rn

For each pair (n, k) with 1 ≤ k < n, we construct a tight frame (ρλ : λ ∈ Λ) for L2 (Rn), which we call a frame of k-plane ridgelets. The intent is to efficiently represent functions that are smooth away from singularities along k-planes in Rn. We also develop tools to help decide whether k-plane ridgelets provide the desired efficient representation. We first construct a wavelet-like tight frame on the X-ray bundle χn,k—the fiber bundle having the Grassman manifold Gn,k of k-planes in Rn for base space, and for fibers the orthocomplements of those planes. This wavelet-like tight frame is the pushout to χn,k, via the smooth local coordinates of Gn,k, of an orthonormal basis of tensor Meyer wavelets on Euclidean space Rk(n−k) × Rn−k. We then use the X-ray isometry [Solmon, D. C. (1976) J. Math. Anal. Appl. 56, 61–83] to map this tight frame isometrically to a tight frame for L2(Rn)—the k-plane ridgelets. This construction makes analysis of a function f ∈ L2(Rn) by k-plane ridgelets identical to the analysis of the k-plane X-ray transform of f by an appropriate wavelet-like system for χn,k. As wavelets are typically effective at representing point singularities, it may be expected that these new systems will be effective at representing objects whose k-plane X-ray transform has a point singularity. Objects with discontinuities across hyperplanes are of this form, for k = n − 1.

Compact stellarators with modular coils

Compact stellarator designs with modular coils and only two or three field periods are now available; these designs have both good stability and quasiaxial symmetry providing adequate transport for a magnetic fusion reactor. If the bootstrap current assumes theoretically predicted values a three field period configuration is optimal, but if that net current turns out to be lower, a device with two periods and just 12 modular coils might be better. There are also attractive designs with quasihelical symmetry and four or five periods whose properties depend less on the bootstrap current. Good performance requires that there be a satisfactory magnetic well in the vacuum field, which is a property lacking in a stellarator-tokamak hybrid that has been proposed for a proof of principle experiment. In this paper, we present an analysis of stability for these configurations that is based on a mountain pass theorem asserting that, if two solutions of the problem of magnetohydrodynamic equilibrium can be found, then there has to be an unstable solution. We compare results of our theory of equilibrium, stability, and transport with recently announced measurements from the large LHD experiment in Japan.

VIDA: a virus database system for the organization of animal virus genome open reading frames

VIDA is a new virus database that organizes open reading frames (ORFs) from partial and complete genomic sequences from animal viruses. Currently VIDA includes all sequences from GenBank for Herpesviridae, Coronaviridae and Arteriviridae. The ORFs are organized into homologous protein families, which are identified on the basis of sequence similarity relationships. Conserved sequence regions of potential functional importance are identified and can be retrieved as sequence alignments. We use a controlled taxonomical and functional classification for all the proteins and protein families in the database. When available, protein structures that are related to the families have also been included. The database is available for online search and sequence information retrieval at http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA.html.

Bcl-2 potentiates the maximal calcium uptake capacity of neural cell mitochondria.

Expression of the human protooncogene bcl-2 protects neural cells from death induced by many forms of stress, including conditions that greatly elevate intracellular Ca2+. Considering that Bcl-2 is partially localized to mitochondrial membranes and that excessive mitochondrial Ca2+ uptake can impair electron transport and oxidative phosphorylation, the present study tested the hypothesis that mitochondria from Bcl-2-expressing cells have a higher capacity for energy-dependent Ca2+ uptake and a greater resistance to Ca(2+)-induced respiratory injury than mitochondria from cells that do not express this protein. The overexpression of bcl-2 enhanced the mitochondrial Ca2+ uptake capacity using either digitonin-permeabilized GT1-7 neural cells or isolated GT1-7 mitochondria by 1.7 and 3.9 fold, respectively, when glutamate and malate were used as respiratory substrates. This difference was less apparent when respiration was driven by the oxidation of succinate in the presence of the respiratory complex I inhibitor rotenone. Mitochondria from Bcl-2 expressors were also much more resistant to inhibition of NADH-dependent respiration caused by sequestration of large Ca2+ loads. The enhanced ability of mitochondria within Bcl-2-expressing cells to sequester large quantities of Ca2+ without undergoing profound respiratory impairment provides a plausible mechanism by which Bcl-2 inhibits certain forms of delayed cell death, including neuronal death associated with ischemia and excitotoxicity.

The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing.

In late 1994 and early 1995, Ebola (EBO) virus dramatically reemerged in Africa, causing human disease in the Ivory Coast and Zaire. Analysis of the entire glycoprotein genes of these viruses and those of other EBO virus subtypes has shown that the virion glycoprotein (130 kDa) is encoded in two reading frames, which are linked by transcriptional editing. This editing results in the addition of an extra nontemplated adenosine within a run of seven adenosines near the middle of the coding region. The primary gene product is a smaller (50-70 kDa), nonstructural, secreted glycoprotein, which is produced in large amounts and has an unknown function. Phylogenetic analysis indicates that EBO virus subtypes are genetically diverse and that the recent Ivory Coast isolate represents a new (fourth) subtype of EBO virus. In contrast, the EBO virus isolate from the 1995 outbreak in Kikwit, Zaire, is virtually identical to the virus that caused a similar epidemic in Yambuku, Zaire, almost 20 years earlier. This genetic stability may indicate that EBO viruses have coevolved with their natural reservoirs and do not change appreciably in the wild.