Structural and biochemical studies of Sporosarcina pasteurii UreE: a nickel-chaperone involved in the urease activation process

Urease is a nickel-dependent enzyme that catalyzes hydrolysis of urea in the last step of organic nitrogen mineralization. Its active site contains a dinuclear center for Ni(II) ions that must be inserted into the apo-enzyme through the action of four accessory proteins (UreD, UreE, UreF, UreG) leading to activation of urease. UreE, acting as a metallo-chaperone, delivers Ni(II) to the preformed complex of apo-urease-UreDFG and has the capability to enhance the GTPase activity of UreG. This study, focused on characterization of UreE from Sporosarcina pasteurii (SpUreE), represents a piece of information on the structure/mobility-function relationships that control nickel binding by SpUreE and its interaction with SpUreG. A calorimetric analysis revealed the occurrence of a binding event between these proteins with positive cooperativity and a stoichiometry consistent with the formation of the (UreE)2-(UreG)2 hetero-oligomer complex. Chemical Shift Perturbations induced by the protein-protein interaction were analyzed using high-resolution NMR spectroscopy, which allowed to characterize the molecular details of the protein surface of SpUreE involved in the complex formation with SpUreG. Moreover, backbone dynamic properties of SpUreE, determined using 15N relaxation analysis, revealed a general mobility in the nanoseconds time-scale, with the fastest motions observed at the C-termini. The latter analysis made it possible for the first time to characterize of the C-terminal portions, known to contain key residues for metal ion binding, that were not observed in the crystal structure of UreE because of disorder. The residues belonging to this portion of SpUreE feature large CSPs upon addition of SpUreG, showing that their chemical environment is directly affected by protein-protein interaction. Metal ion selectivity and affinity of SpUreE for cognate Ni(II) and non cognate Zn(II) metal ions were determined, and the ability of the protein to select Ni(II) over Zn(II), in consistency with the proposed role in Ni(II) cations transport, was established.

Miniemulsionen als räumliche Begrenzungen : Synthese von Polymer-Hydroxylapatit-Nanopartikeln, bio-inspirierten Nanokapseln und Polymer-Einzelkettenpartikeln

In der vorliegenden Arbeit wurden Miniemulsionen als räumliche Begrenzungen für die Synthese von unterschiedlichen funktionellen Materialien mit neuartigen Eigenschaften verwendet. Das erste Themengebiet umfasst die Herstellung von Polymer/Calciumphosphat-Hybridpartikeln und –Hybridkapseln über die templatgesteuerte Mineralisation von Calciumphosphat. Die funktionalisierte Oberfläche von Polymernanopartikeln, welche über die Miniemulsionspolymerisation hergestellt wurden, diente als Templat für die Kristallisation von Calciumphosphat auf den Partikeln. Der Einfluss der funktionellen Carboxylat- und Phosphonat-Oberflächengruppen auf die Komplexierung von Calcium-Ionen sowie die Mineralisation von Calciumphosphat auf der Oberfläche der Nanopartikel wurde mit mehreren Methoden (ionenselektive Elektroden, REM, TEM und XRD) detailliert analysiert. Es wurde herausgefunden, dass die Mineralisation bei verschiedenen pH-Werten zu vollkommen unterschiedlichen Kristallmorphologien (nadel- und plättchenförmige Kristalle) auf der Oberfläche der Partikel führt. Untersuchungen der Mineralisationskinetik zeigten, dass die Morphologie der Hydroxylapatit-Kristalle auf der Partikeloberfläche mit der Änderung der Kristallisationsgeschwindigkeit durch eine sorgfältige Wahl des pH-Wertes gezielt kontrolliert werden kann. Sowohl die Eigenschaften der als Templat verwendeten Polymernanopartikel (z. B. Größe, Form und Funktionalisierung), als auch die Oberflächentopografie der entstandenen Polymer/Calciumphosphat-Hybridpartikel wurden gezielt verändert, um die Eigenschaften der erhaltenen Kompositmaterialien zu steuern. rnEine ähnliche bio-inspirierte Methode wurde zur in situ-Herstellung von organisch/anorganischen Nanokapseln entwickelt. Hierbei wurde die flexible Grenzfläche von flüssigen Miniemulsionströpfchen zur Mineralisation von Calciumphosphat an der Grenzfläche eingesetzt, um Gelatine/Calciumphosphat-Hybridkapseln mit flüssigem Kern herzustellen. Der flüssige Kern der Nanokapseln ermöglicht dabei die Verkapselung unterschiedlicher hydrophiler Substanzen, was in dieser Arbeit durch die erfolgreiche Verkapselung sehr kleiner Hydroxylapatit-Kristalle sowie eines Fluoreszenzfarbstoffes (Rhodamin 6G) demonstriert wurde. Aufgrund der intrinsischen Eigenschaften der Gelatine/Calciumphosphat-Kapseln konnten abhängig vom pH-Wert der Umgebung unterschiedliche Mengen des verkapselten Fluoreszenzfarbstoffes aus den Kapseln freigesetzt werden. Eine mögliche Anwendung der Polymer/Calciumphosphat-Partikel und –Kapseln ist die Implantatbeschichtung, wobei diese als Bindeglied zwischen künstlichem Implantat und natürlichem Knochengewebe dienen. rnIm zweiten Themengebiet dieser Arbeit wurde die Grenzfläche von Nanometer-großen Miniemulsionströpfchen eingesetzt, um einzelne in der dispersen Phase gelöste Polymerketten zu separieren. Nach der Verdampfung des in den Tröpfchen vorhandenen Lösungsmittels wurden stabile Dispersionen sehr kleiner Polymer-Nanopartikel (<10 nm Durchmesser) erhalten, die aus nur wenigen oder einer einzigen Polymerkette bestehen. Die kolloidale Stabilität der Partikel nach der Synthese, gewährleistet durch die Anwesenheit von SDS in der wässrigen Phase der Dispersionen, ist vorteilhaft für die anschließende Charakterisierung der Polymer-Nanopartikel. Die Partikelgröße der Nanopartikel wurde mittels DLS und TEM bestimmt und mit Hilfe der Dichte und des Molekulargewichts der verwendeten Polymere die Anzahl an Polymerketten pro Partikel bestimmt. Wie es für Partikel, die aus nur einer Polymerkette bestehen, erwartet wird, stieg die mittels DLS bestimmte Partikelgröße mit steigendem Molekulargewicht des in der Synthese der Partikel eingesetzten Polymers deutlich an. Die Quantifizierung der Kettenzahl pro Partikel mit Hilfe von Fluoreszenzanisotropie-Messungen ergab, dass Polymer-Einzelkettenpartikel hoher Einheitlichkeit hergestellt wurden. Durch die Verwendung eines Hochdruckhomogenisators zur Herstellung der Einzelkettendispersionen war es möglich, größere Mengen der Einzelkettenpartikel herzustellen, deren Materialeigenschaften zurzeit näher untersucht werden.rn

Maßgeschneiderte polymerisierbare Tenside zur simultanen Stabilisierung und Oberflächenfunktionalisierung von Nanopartikeln in der Miniemulsionspolymerisation

Im Rahmen dieser Arbeit wurden verschiedene funktionale, polymerisierbare Tenside (Surfmere) synthetisiert, um unmittelbar und exklusiv die Partikeloberfläche in der Miniemulsionspolymerisation mit der gewünschten Funktion für weitere Anwendungen auszurüsten. Hierdurch ist es möglich, auf konventionelle Tenside, welche bedingt durch ihre Mobilität in einigen Anwendungen zu Schwierigkeiten führen, gänzlich zu verzichten. Zusätzlich bietet der Einsatz von Surfmeren eine höhere Kontrolle über die Lokalisation und Verteilung der Funktionalitäten auf der Partikeloberfläche, im Vergleich zum Einsatz von klassischen Comonomeren. rnThematische Schwerpunkte der Arbeit lagen in der Ausrüstung von Partikeloberflächen mit Haftgruppen (Phosphonsäuren) oder Fluoreszenzmarkern sowie der Aufbringung von Initiatorgruppen über Surfmere zur Synthese von Kern-Schale-Partikeln in einem zweistufigen Prozess. Bei allen neu synthetisierten Surfmeren wurde als polymerisierbare Einheit eine Methacrylamidgruppe gewählt, um Funktionalitätenverlust durch Hydrolyse auszuschließen.rnIm Bereich der Haftgruppen wurde gezeigt, dass der Einsatz von phosphonathaltigen Surfmeren die Kontrolle der Partikelgröße und Funktionalisierungsdichte in weiten Bereichen ermöglicht und langzeitstabile Dispersionen erhalten werden. Die Partikel wurden auf ihre Cytotoxizität und ihre biomimetische Mineralisierbarkeit hin untersucht.rnZum Nachweis der Copolymerisation des Surfmers mit dem Hauptmonomer wurde ein Phosphonsäure-Surfmer mit einem Farbstoff auf Naphthalimidbasis synthetisiert. Dies ermöglichte den Nachweis der Copolymerisation mittels Gelpermeationschromatographie.rnZur Fluoreszenzmarkierung von Partikeloberfläche wurden erstmals Surfmere realisiert, die in der Kopfgruppe eine BODIPY-Einheit, welche in 2 oder 2,6-Position sulfoniert wurde, als Fluorophor tragen. Der Polymerisationsbeweis wurde durch HPLC-Messungen geführt und die Lokalisation auf der Partikeloberfläche durch Quenchungsexperimente verifiziert. rnDes Weiteren wurde ein kationisches Surfmer synthetisiert, welches nahe der Kopfgruppe eine Bromo iso-buttersäureeinheit zur AGET-ATRP-Initiierung trägt und somit potentiell zum Aufbau von Kern-Schale-Morphologien befähigt ist.

Microbial ecology of biotechnological processes

The investigation of phylogenetic diversity and functionality of complex microbial communities in relation to changes in the environmental conditions represents a major challenge of microbial ecology research. Nowadays, particular attention is paid to microbial communities occurring at environmental sites contaminated by recalcitrant and toxic organic compounds. Extended research has evidenced that such communities evolve some metabolic abilities leading to the partial degradation or complete mineralization of the contaminants. Determination of such biodegradation potential can be the starting point for the development of cost effective biotechnological processes for the bioremediation of contaminated matrices. This work showed how metagenomics-based microbial ecology investigations supported the choice or the development of three different bioremediation strategies. First, PCR-DGGE and PCR-cloning approaches served the molecular characterization of microbial communities enriched through sequential development stages of an aerobic cometabolic process for the treatment of groundwater contaminated by chlorinated aliphatic hydrocarbons inside an immobilized-biomass packed bed bioreactor (PBR). In this case the analyses revealed homogeneous growth and structure of immobilized communities throughout the PBR and the occurrence of dominant microbial phylotypes of the genera Rhodococcus, Comamonas and Acidovorax, which probably drive the biodegradation process. The same molecular approaches were employed to characterize sludge microbial communities selected and enriched during the treatment of municipal wastewater coupled with the production of polyhydroxyalkanoates (PHA). Known PHA-accumulating microorganisms identified were affiliated with the genera Zooglea, Acidovorax and Hydrogenophaga. Finally, the molecular investigation concerned communities of polycyclic aromatic hydrocarbon (PAH) contaminated soil subjected to rhizoremediation with willow roots or fertilization-based treatments. The metabolic ability to biodegrade naphthalene, as a representative model for PAH, was assessed by means of stable isotope probing in combination with high-throughput sequencing analysis. The phylogenetic diversity of microbial populations able to derive carbon from naphthalene was evaluated as a function of the type of treatment.

Aerobic biodegradation of chlorinated solvents and plastics in batch and continuous-flow bioreactors: process development, and identification of suitable chemical pre-Treatments

The purpose of the first part of the research activity was to develop an aerobic cometabolic process in packed bed reactors (PBR) to treat real groundwater contaminated by trichloroethylene (TCE) and 1,1,2,2-tetrachloroethane (TeCA). In an initial screening conducted in batch bioreactors, different groundwater samples from 5 wells of the contaminated site were fed with 5 growth substrates. The work led to the selection of butane as the best growth substrate, and to the development and characterization from the site’s indigenous biomass of a suspended-cell consortium capable to degrade TCE with a 90 % mineralization of the organic chlorine. A kinetic study conducted in batch and continuous flow PBRs and led to the identification of the best carrier. A kinetic study of butane and TCE biodegradation indicated that the attached-cell consortium is characterized by a lower TCE specific degredation rates and by a lower level of mutual butane-TCE inhibition. A 31 L bioreactor was designed and set up for upscaling the experiment. The second part of the research focused on the biodegradation of 4 polymers, with and with-out chemical pre-treatments: linear low density polyethylene (LLDPE), polyethylene (PP), polystyrene (PS) and polyvinyl chloride (PVC). Initially, the 4 polymers were subjected to different chemical pre-treatments: ozonation and UV/ozonation, in gaseous and aqueous phase. It was found that, for LLDPE and PP, the coupling UV and ozone in gas phase is the most effective way to oxidize the polymers and to generate carbonyl groups on the polymer surface. In further tests, the effect of chemical pretreatment on polyner biodegrability was studied. Gas-phase ozonated and virgin polymers were incubated aerobically with: (a) a pure strain, (b) a mixed culture of bacteria; and (c) a fungal culture, together with saccharose as a co-substrate.

Nonclassical crystallization of bivalent metal carbonates

Nichtklassische Kristallisationen tragen heutzutage einen entscheidenden Anteil zum Verständnis von Biomineralisationsprozessen und anspruchsvoller Morphogenese in vitro bei. Die vorliegende Dissertation stellt drei neue Vertreter nichtklassischer Kristallisationen vor, die während der Fällung von Calciumcarbonat und verwandten zweiwertigen Carbonaten auftreten.rn(a) Zum ersten Male wird eine Symmetrie-brechende Phasenselektion von Calciumcarbonat beschrieben, die auf einem subtilen Wechselspiel von verketteten Gleichgewichten basiert und deren Ursache letztendlich der paritätsverletzenden Energiedifferenz (PVED) zugeschrieben wird. rn(b) Die interkristalline Minoritätskomponente eines Mesokristalles, seien es z.B. eingeschlossenes Proteine oder polymere Additive, erfahren eine Morphogenese im Sinne einer Formpressung. Dieser bislang wenig beachtete Effekt in Mesokristallen wurde zur Herstellung von Nanoröhren eingesetzt, die aus verschiedensten Materialien bestehen können (z.B. Calciumcarbonat oder Cadmiumsulfid).rn(c) Das Hauptaugenmerk dieser Dissertation liegt auf dem Auftreten eines flüssig-amorphen Intermediates während der Metallcarbonat-Präzipitation. Durch diffusionskontrollierte und kontaktfreie Versuchsführung konnte die Existenz eines solchen nichtklassischen, flüssigen Intermediates, welches der kristallinen Phase bei neutralen pH vorangeht, sicher nachgewiesen werden. rn

Reduced muscle mass and bone size in pediatric patients with inflammatory bowel disease

BACKGROUND: Decreased bone mineral density has been reported in children with inflammatory bowel disease (IBD). We used peripheral quantitative computed tomography (pQCT) to assess bone mineralization, geometry, and muscle cross-sectional area (CSA) in pediatric IBD. METHODS: In a cross-sectional study, pQCT of the forearm was applied in 143 IBD patients (mean age 13.9 +/- 3.5 years); 29% were newly diagnosed, 98 had Crohn's disease, and 45 had ulcerative colitis. Auxological data, cumulative glucocorticoid dose, disease activity indices, laboratory markers for inflammation, and bone metabolism were related to the results of pQCT. RESULTS: Patients were compromised in height (-0.82 +/- 1.1 SD), weight (-0.77 +/- 1.0 SD), muscle mass (-1.12 +/- 1.0 SD), and total bone cross-sectional area (-0.79 +/- 1.0 SD) compared to age- and sex-matched healthy controls (z-scores). In newly diagnosed patients, the ratio of bone mineral mass per muscle CSA was higher than in those with longer disease duration (1.00 versus 0.30, P = 0.007). Serum albumin level and disease activity correlated with muscle mass, accounting for 41.0% of variability in muscle mass (P < 0.01). The trabecular bone mineral density z-score was on average at the lower normal level (-0.40 +/- 1.3 SD, P < 0.05). CONCLUSIONS: Reduced bone geometry was explained only in part by reduced height. Bone disease in children with IBD seems to be secondary to muscle wasting, which is already present at diagnosis. With longer disease duration, bone adapts to the lower muscle CSA. Serum albumin concentration is a good marker for muscle wasting and abnormal bone development.

Differential expression of the bone and the liver tissue non-specific alkaline phosphatase isoforms in brain tissues

The enzyme tissue non-specific alkaline phosphatase (TNAP) belongs to the ectophosphatase family. It is present in large amounts in bone in which it plays a role in mineralization but little is known about its function in other tissues. Arguments are accumulating for its involvement in the brain, in particular in view of the neurological symptoms accompanying human TNAP deficiencies. We have previously shown, by histochemistry, alkaline phosphatase (AP) activity in monkey brain vessels and parenchyma in which AP exhibits specific patterns. Here, we clearly attribute this activity to TNAP expression rather than to other APs in primates (human and marmoset) and in rodents (rat and mouse). We have not found any brain-specific transcripts but our data demonstrate that neuronal and endothelial cells exclusively express the bone TNAP transcript in all species tested, except in mouse neurons in which liver TNAP transcripts have also been detected. Moreover, we highlight the developmental regulation of TNAP expression; this also acts during neuronal differentiation. Our study should help to characterize the regulation of the expression of this ectophosphatase in various cell types of the central nervous system.

Trpv6 mediates intestinal calcium absorption during calcium restriction and contributes to bone homeostasis

Energy-dependent intestinal calcium absorption is important for the maintenance of calcium and bone homeostasis, especially when dietary calcium supply is restricted. The active form of vitamin D, 1,25-dihydroxyvitamin D(3) [1,25(OH)(2)D(3)], is a crucial regulator of this process and increases the expression of the transient receptor potential vanilloid 6 (Trpv6) calcium channel that mediates calcium transfer across the intestinal apical membrane. Genetic inactivation of Trpv6 in mice (Trpv6(-/-)) showed, however, that TRPV6 is redundant for intestinal calcium absorption when dietary calcium content is normal/high and passive diffusion likely contributes to maintain normal serum calcium levels. On the other hand, Trpv6 inactivation impaired the increase in intestinal calcium transport following calcium restriction, however without resulting in hypocalcemia. A possible explanation is that normocalcemia is maintained at the expense of bone homeostasis, a hypothesis investigated in this study. In this study, we thoroughly analyzed the bone phenotype of Trpv6(-/-) mice receiving a normal (approximately 1%) or low (approximately 0.02%) calcium diet from weaning onwards using micro-computed tomography, histomorphometry and serum parameters. When dietary supply of calcium is normal, Trpv6 inactivation did not affect growth plate morphology, bone mass and remodeling parameters in young adult or aging mice. Restricting dietary calcium had no effect on serum calcium levels and resulted in a comparable reduction in bone mass accrual in Trpv6(+/+) and Trpv6(-/-) mice (-35% and 45% respectively). This decrease in bone mass was associated with a similar increase in bone resorption, whereas serum osteocalcin levels and the amount of unmineralized bone matrix were only significantly increased in Trpv6(-/-) mice. Taken together, our findings indicate that TRPV6 contributes to intestinal calcium transport when dietary calcium supply is limited and in this condition indirectly regulates bone formation and/or mineralization.

Generation of an osteogenic graft from human placenta and placenta-derived mesenchymal stem cells

The objective of the study was to determine the feasibility of generating a biodegradable, stem cell-loaded osteogenic composite graft from human placenta. Initially, a scaffold from human chorion membrane was produced. Human placenta mesenchymal stem cells (MSCs) derived from either first-trimester chorionic villi or term chorion membrane were differentiated osteogenically on this scaffold. Outgrowth, adherence, and osteogenic differentiation of cells were assessed by immunohistochemistry (IHC), scanning electron microscopy, protein expression, and real-time polymerase chain reaction (RT-PCR). Our results showed that a cell-free extracellular matrix scaffold can be generated from human chorion. Seeded MSCs densely adhered to that scaffold and were osteogenically differentiated. Calcium and alkaline phosphatase were detected in the cell-scaffold constructs as a proof of mineralization and findings were confirmed by IHC and RT-PCR results. This study shows for the first time that generation of an osteogenic composite graft using placental tissue is feasible. It might allow therapeutic application of autologous or allogeneic grafts in congenital skeletal defects by means of a composite graft.

Premature Osteoblast Clustering by Enamel Matrix Proteins Induces Osteoblast Differentiation through Up-Regulation of Connexin 43 and N-Cadherin

In recent years, enamel matrix derivative (EMD) has garnered much interest in the dental field for its apparent bioactivity that stimulates regeneration of periodontal tissues including periodontal ligament, cementum and alveolar bone. Despite its widespread use, the underlying cellular mechanisms remain unclear and an understanding of its biological interactions could identify new strategies for tissue engineering. Previous in vitro research has demonstrated that EMD promotes premature osteoblast clustering at early time points. The aim of the present study was to evaluate the influence of cell clustering on vital osteoblast cell-cell communication and adhesion molecules, connexin 43 (cx43) and N-cadherin (N-cad) as assessed by immunofluorescence imaging, real-time PCR and Western blot analysis. In addition, differentiation markers of osteoblasts were quantified using alkaline phosphatase, osteocalcin and von Kossa staining. EMD significantly increased the expression of connexin 43 and N-cadherin at early time points ranging from 2 to 5 days. Protein expression was localized to cell membranes when compared to control groups. Alkaline phosphatase activity was also significantly increased on EMD-coated samples at 3, 5 and 7 days post seeding. Interestingly, higher activity was localized to cell cluster regions. There was a 3 fold increase in osteocalcin and bone sialoprotein mRNA levels for osteoblasts cultured on EMD-coated culture dishes. Moreover, EMD significantly increased extracellular mineral deposition in cell clusters as assessed through von Kossa staining at 5, 7, 10 and 14 days post seeding. We conclude that EMD up-regulates the expression of vital osteoblast cell-cell communication and adhesion molecules, which enhances the differentiation and mineralization activity of osteoblasts. These findings provide further support for the clinical evidence that EMD increases the speed and quality of new bone formation in vivo.

Eliminating exposure to aqueous solvents is necessary for the early detection and ultrastructural elemental analysis of sites of calcium and phosphorus enrichment in mineralizing UMR106-01 osteoblastic cultures

The mechanism underlying the mineralization of bone is well studied and yet it remains controversial. Inherent difficulties of imaging mineralized tissues and the aqueous solubility of calcium and phosphate, the 2 ions which combine to form bone mineral crystals, limit current analyses of labile diffusible, amorphous, and crystalline intermediates by electron microscopy. To improve the retention of calcium and phosphorus, we developed a pseudo nonaqueous processing approach and used it to characterize biomineralization foci, extracellular sites of hydroxyapatite deposition in osteoblastic cell cultures. Since mineralization of UMR106-01 osteoblasts is temporally synchronized and begins 78 h after plating, we used these cultures to evaluate the effectiveness of our method when applied to cells just prior to the formation of the first mineral crystals. Our approach combines for the first time 3 well-established methods with a fourth one, i.e. dry ultrathin sectioning. Dry ultrathin sectioning with an oscillating diamond knife was used to produce electron spectroscopic images of mineralized biomineralization foci which were high-pressure frozen and freeze substituted. For comparison, cultures were also treated with conventional processing and wet sectioning. The results show that only the use of pseudo nonaqueous processing was able to detect extracellular sites of early calcium and phosphorus enrichment at 76 h, several hours prior to detection of mineral crystals within biomineralization foci.

Stable N isotope composition of nitrate reflects N transformations during the passage of water through a montane rain forest in Ecuador

Knowledge of the fate of deposited N in the possibly N-limited, highly biodiverse north Andean forests is important because of the possible effects of N inputs on plant performance and species composition. We analyzed concentrations and fluxes of NO3 −–N, NH4 +–N and dissolved organic N (DON) in rainfall, throughfall, litter leachate, mineral soil solutions (0.15–0.30 m depths) and stream water in a montane forest in Ecuador during four consecutive quarters and used the natural 15N abundance in NO3 − during the passage of rain water through the ecosystem and bulk δ15N values in soil to detect N transformations. Depletion of 15N in NO3 − and increased NO3 −–N fluxes during the passage through the canopy and the organic layer indicated nitrification in these compartments. During leaching from the organic layer to mineral soil and stream, NO3 − concentrations progressively decreased and were enriched in 15N but did not reach the δ15N values of solid phase organic matter (δ15N = 5.6–6.7‰). This suggested a combination of nitrification and denitrification in mineral soil. In the wettest quarter, the δ15N value of NO3 − in litter leachate was smaller (δ15N = −1.58‰) than in the other quarters (δ15N = −9.38 ± SE 0.46‰) probably because of reduced mineralization and associated fractionation against 15N. Nitrogen isotope fractionation of NO3 − between litter leachate and stream water was smaller in the wettest period than in the other periods probably because of a higher rate of denitrification and continuous dilution by isotopically lighter NO3 −–N from throughfall and nitrification in the organic layer during the wettest period. The stable N isotope composition of NO3 − gave valuable indications of N transformations during the passage of water through the forest ecosystem from rainfall to the stream.

Morphological and Mechanical Changes in Juvenile Red-Eared Slider Turtle (Trachemys Scripta Elegans) Shells During Ontogeny

Turtles experience numerous modifications in the morphological, physiological, and mechanical characteristics of their shells through ontogeny. Although a general picture is available of the nature of these modifications, few quantitative studies have been conducted on changes in turtle shell shape through ontogeny, and none on changes in strength or rigidity. This study investigates the morphological and mechanical changes that juvenile Trachemys scripta elegans undergo as they increase in size. Morphology and shell rigidity were quantified in a sample of 36 alcohol-preserved juvenile Trachemys scripta elegans. Morphometric information was used to create finite element models of all specimens. These models were used to assess the mechanical behavior of the shells under various loading conditions. Overall, we find that turtles experience complementary changes in size, shape, deformability, and relative strength as they grow. As turtles age their shells become larger, more elongate, relatively flatter, and more rigid. These changes are associated with decreases in relative (size independent) strength, even though the shells of larger turtles are stronger in an absolute sense. Decreased deformability is primarily due to changes in the size of the animals. Residual variation in deformability cannot be explained by changes in shell shape. This variation is more likely due to changes in the degree of connectedness of the skeletal elements in the turtle's shells, along with changes in the thickness and degree of mineralization of shell bone. We suggest that the mechanical implications of shell size, shape, and deformability may have a large impact on survivorship and development in members of this species as they mature. J. Morphol. 275:391-397, 2014. 2013 Wiley Periodicals, Inc. Copyright 2013 Wiley Periodicals, Inc.

Temporal and spatial variation of nitrogen transformations in nitrogen-saturated soils of a central Appalachian hardwood forest

We studied temporal and spatial patterns of soil nitrogen (N) dynamics from 1993 to 1995 in three watersheds of Fernow Experimental Forest, W.V.: WS7 (24-year-old, untreated); WS4 (mature, untreated); and WS3 (24-year-old, treated with (NH4)2SO since 1989 at the rate of 35 kg Nha–1year–1). Net nitrification was 141, 114, and115 kg Nha–1year–1, for WS3, WS4, and WS7, respectively, essentially 100% of net N mineralization for all watersheds. Temporal (seasonal) patterns of nitrification were significantly related to soil moisture and ambient temperaturein untreated watersheds only. Spatial patterns of soil water NO3–of WS4 suggest that microenvironmental variabilitylimits rates of N processing in some areas of this N-saturated watershed, in part by ericaceous species in the herbaceous layer. Spatial patterns of soil water NO3–in treated WS3 suggest that later stages of N saturation may result inhigher concentrations with less spatial variability. Spatial variability in soil N variables was lower in treated WS3 versus untreated watersheds. Nitrogen additions have altered the response of N-processing microbes to environmental factors, becoming less sensitive to seasonal changes in soil moisture and temperature. Biotic processes responsible forregulating N dynamics may be compromised in N-saturated forest ecosystems.