Análise estrutural comparativa dos órgãos vegetativos em Zingiberaceae e implicações evolutivas do xilema

A família Zingiberaceae é a mais representativa da ordem Zingiberales, contendo mais de 1.000 espécies divididas em quatro subfamílias e seis tribos, amplamente distribuídas por todos os continentes. Nas últimas décadas houve um incremento nos estudos relativos à distribuição, o grau de especialização e a funcionalidade dos elementos de vaso em diversas famílias de monocotiledôneas. Entretanto, ainda existem poucos estudos que contribuam para o delineamento dos aspectos evolutivos e ecológicos das tribos de Zingiberaceae. Os objetivos desse trabalho são os de comparar a anatomia dos órgãos subterrâneos e aéreos de oito espécies de Zingiberaceae e estabelecer a distribuição dos elementos traqueais, bem como, o de determinar a especialização dos elementos de vaso de vinte e oito espécies pertencentes a três tribos Alpineae, Zingibereae e Globbeae. As espécies foram coletadas em áreas naturais protegidas e em áreas de cultivos particulares no estado do Rio de Janeiro. Os órgãos subterrâneos e aéreos foram processados de acordo com as técnicas usuais de microscopia óptica e eletrônica de varredura. A análise estrutural do eixo vegetativo das oito espécies pertencentes aos gêneros Alpinia, Renealmia, Curcuma, Hedychium e Zingiber indicam uma similaridade e mostram que os elementos de vaso estão restritos às raízes. Alguns caracteres estruturais dos elementos de vaso, como o tipo da placa de perfuração, o número de barras e o tipo de espessamento parietal se mostraram importantes para o estabelecimento da relação entre as subfamílias e tribos. Zingibereae e Globbeae reúnem estados de caracteres mais basais, como placa de perfuração escalariforme e espessamento parietal espiralado, e os mais derivados são encontrados na tribo Alpinieae, incluindo placa de perfuração simples e espessamento parietal parcialmente pontoado

Aplicação da geocomputação a estudos de susceptibilidade de deslizamentos de terra

Esta tese propôs uma metodologia para detecção de áreas susceptíveis a deslizamentos de terra a partir de imagens aéreas, culminando no desenvolvimento de uma ferramenta computacional, denominada SASD/T, para testar a metodologia. Para justificar esta pesquisa, um levantamento sobre os desastres naturais da história brasileira relacionada a deslizamentos de terra e as metodologias utilizadas para a detecção e análise de áreas susceptíveis a deslizamentos de terra foi realizado. Estudos preliminares de visualização 3D e conceitos relacionados ao mapeamento 3D foram realizados. Estereoscopia foi implementada para visualizar tridimensionalmente a região selecionada. As altitudes foram encontradas através de paralaxe, a partir dos pontos homólogos encontrados pelo algoritmo SIFT. Os experimentos foram realizados com imagens da cidade de Nova Friburgo. O experimento inicial mostrou que o resultado obtido utilizando SIFT em conjunto com o filtro proposto, foi bastante significativo ao ser comparado com os resultados de Fernandes (2008) e Carmo (2010), devido ao número de pontos homólogos encontrados e da superfície gerada. Para detectar os locais susceptíveis a deslizamentos, informações como altitude, declividade, orientação e curvatura foram extraídas dos pares estéreos e, em conjunto com as variáveis inseridas pelo usuário, forneceram uma análise de quão uma determinada área é susceptível a deslizamentos. A metodologia proposta pode ser estendida para a avaliação e previsão de riscos de deslizamento de terra de qualquer outra região, uma vez que permite a interação com o usuário, de modo que este especifique as características, os itens e as ponderações necessárias à análise em questão.

Amplicon metagenomics for elucidating microbial community changes associated to conventional and organic farming of Beta vulgaris and Solanum lycopersicum

Soil microbial community changes associated to conventional and organic farming of two relevant crops (Beta vulgaris and Solanum lycopersicum) were analysed through 16s rRNA amplicon sequencing. This study revealed microbial communities in the agricultural soils studied to be similar to other reported nutrient-rich microbiomes, and some significant differences between the microbial communities associated to the two farming practices were found. Some phyla (Chloroflexi and Thermi) were found to be present in different abundances according to soil treatment. As chloroplast interference can be a stumbling block in plant-associated 16s rRNA amplicon metagenomics analysis of aerial plant tissues, two protocols for bacterial cell detachment (orbital shaking and ultrasound treatment) and two protocols for microbial biomass recovery (centrifugation and filtration) were tested regarding their efficiency at excluding plant-DNA. An alternative method to the one proposed by Rastogi et al (2010) for evaluating the chloroplast-amplicon content in post-PCR samples was tested, and the method revealed that filtration was the most efficient protocol in minimising chloroplast interference.

Decline in sea otter (Enhydra lutris) populations along the Alaska Peninsula, 1986–2001

During the 1990s, sea otter (Enhydra lutris) counts in the Aleutian archipelago decreased by 70% throughout the archipelago between 1992 and 2000. Recent aerial surveys in the Aleutians did not identify the eastward extent of the decline; therefore we conducted an aerial survey along the Alaska Peninsula for comparison with baseline information. Since 1986, abundance estimates in offshore habitat have declined by 27– 49% and 93 –94% in northern and southern Alaska Peninsula study areas, respectively. During this same time period, sea otter density has declined by 63% along the island coastlines within the south Alaska Peninsula study area. Between 1989 and 2001, sea otter density along the southern coastline of the Alaska Peninsula declined by 35% to the west of Castle Cape but density increased by 4% to the east, which may indicate an eastward extent of the decline. In all study areas, sea otters were primarily concentrated in bays and lagoon, whereas historically, large rafts of otters had been distributed offshore. The population declines observed along the Alaska Peninsula occurred at roughly the same time as declines in the Aleutian islands to the east and the Kodiak archipelago to the west. Since the mid-1980s, the sea otter population throughout southwest Alaska has declined overall by an estimated 56–68%, and the decline may be one of the most significant sea otter conservation issues in our time.

Abundance and distribution of California sea lions (Zalophus californianus) in central and northern California during 1998 and summer 1999

The abundance and distribution of California sea lions (Zalophus californianus) in central and northern California was studied to allow future evaluation of their impact on salmonids, the ecosystem, and f isheries. Abundance at-sea was estimated by using the strip transect method from a fixed-wing aircraft with a belly viewing port. Abundance on land was estimated from 126-mm-format aerial photographs of animals at haulouts between Point Conception and the California−Oregon border. The sum of these two estimates represented total abundance for central and northern California. Both types of survey were conducted in May−June 1998, September 1998, December 1998, and July 1999. A haulout survey was conducted in July 1998. The greatest number of sea lions occurred near Monterey Bay and San Francisco Bay for all surveys. Abundance was high in central and northern California in 1998 when warm water from the 1997−98 El Niño affected the region and was low in July 1999 when cold water La Niña conditions were prevalent. At-sea abundance estimates in central and northern California ranged from 12,232 to 40,161 animals, and haulout abundance was 13,559 to 36,576 animals. Total abundance of California sea lions in central and northern California was estimated as 64,916 in May−June 1998, 75,673 in September 1998, 56,775 in December 1998, and 25,791 in July 1999. The proportion of total abundance to animals hauled-out for the four complete surveys ranged from 1.77 to 2.13, and the mean of 1.89 was used to estimate a total abundance of 49,697 for July 1998. This multiplier may be applicable in the future to estimate total abundance of California sea lions off central and northern California if only the abundance of animals at haulout sites is known.

Forty Years of Winter: Cetaceans Observed During the Southbound Migration of Gray Whales, Eschrichtius robustus, Near Granite Canyon, Central California

From December to February in most years from 1967 to 2007, observers counted gray whales, Eschrichtius robustus, from shore sites south of Carmel in central California. In addition to gray whales, other cetacean species were also recorded. These observations were summarized and compared among survey platforms and to ocean conditions. Eleven cetacean species were identified including eight odontocete species (killer whale, Orcinus orca; Pacific white-sided dolphin, Lagenorhynchus obliquidens; common dolphin, Delphinus spp.; bottlenose dolphin, Tursiops truncatus, northern right whale dolphin, Lissodelphis borealis; Risso’s dolphin, Grampus griseus; Dall’s porpoise, Phocoenoides dalli; and harbor porpoise, Phocoena phocoena) and three mysticete species (humpback whale, Megaptera novaeangliae; minke whale, Balaenoptera acutorostrata; and blue whale, Balaenoptera musculus). As expected, the detection of certain species among survey platforms (shore-based census watches, 25-power “Big Eye” binocular watches, and aerial surveys) was limited by species surfacing behavior and/or bathymetric preference. Comparisons among the shore-based census efforts showed a significant difference in sightings rates from 1967–84 (n = 14, mean = 0.11, SD = 0.11) to 1985–2007 (n = 11, mean = 1.48, SD = 0.47; t-Test: p < 0.001, df = 23). The warm period observed during the 1990’s may partially explain the increase in sighting rates and diversity of species observed at the census site compared to the much cooler temperatures of the 1970’s.

Distribution of Belugas, Delphinapterus leucas, in Cook Inlet, Alaska, During June/July 1993–2000

Aerial surveys of belugas, Delphinapterus leucas, in Cook Inlet wre flown each year during June and/or July from 1993 to 2000. This project was designed to delineate distribution and collect aerial counts, elements critical to the managment of this small, isolated stock that was subjected to a persistent harvest by Native hunters. The surveys provided a thorough, annual coverage of the coastal areas of the inlet (1,300 km of shoreline) and included roughly 1,000 km of offshore transects annually. Coastal transects were flown 1.4 km from the waterline, thus surveying most of the area within 3 km of shore. These, along with offshore transects, provided annual systematic searches of 13-33% of the entire inlet. The largest concentration of belugas (151-288 whales by aerial count) was in the northern portion of upper Cook Inlet in the Susitna River Delta and/or in Knik Arm. Another concentration (17-49 whales) was consistently found between Chickaloon River and Point Possession. Smaller groups (generally <20 whales) were occasionally found in Turn-again Arm, Kachemak Bay, Redoubt Bay (Big River), and Trading Bay (McArthur River) prior to 1995 but not thereafter. Over the past three decades, summer distribution has shrunk such that sightings now only rarely occur in lower Cook Inlet and in offshore areas. In the 1990's, most (96-100%) of the sightings were concentrated in a few dense groups in shallow areas near river mouths in upper Cook Inlet.

Abundance of Belugas, Delphinapterus leucas, in Cook Inlet, Alaska, 1994–2000

Annual abundance estimates of belugas, Delphinapterus leucas, in Cook Inlet were calculated from counts made by aerial observers and aerial video recordings. Whale group-size estimates were corrected for subsurface whales (availability bias) and whales that were at the surface but were missed (detection bias). Logistic regression was used to estimate the probability that entire groups were missed during the systematic surveys, and the results were used to calculate a correction to account for the whales in these missed groups (1.015, CV = 0.03 in 1994–98; 1.021, CV = 0.01 in 1999– 2000). Calculated abundances were 653 (CV = 0.43) in 1994, 491 (CV = 0.44) in 1995, 594 (CV = 0.28) in 1996, 440 (CV = 0.14) in 1997, 347 (CV = 0.29) in 1998, 367 (CV = 0.14) in 1999, and 435 (CV = 0.23, 95% CI=279–679) in 2000. For management purposes the current Nbest = 435 and Nmin = 360. These estimates replace preliminary estimates of 749 for 1994 and 357 for 1999. Monte Carlo simulations indicate a 47% probability that from June 1994 to June 1998 abundance of the Cook Inlet stock of belugas was depleted by 50%. The decline appears to have stopped in 1998.

Spotted Seals, Phoca largha, in Alaska

The worldwide literature on management of spotted seals, Phoca largha, was reviewed and updated, and aerial surveys weref lown in 1992 and 1993 to determine the species' distribution and abundance in U.S. waters. In April, spotted seals were found only in the Bering Sea ice front. In June, they were seen along deteriorating ice floes and fast ice in Norton Sound. Surveys along most of Alaska's western coast in August and September found over 2,500 spotted seals in Kuskokwim Bay and concentrations of 100-400 seals around Nunivak Island, Scammon Bay, Golovnin Bay/Norton Sound, Cape Espenberg/Kotzebue Sound, and Kasegaluk Lagoon. All of these sites have been used by spotted seals in the past. The sum of the highest counts, irrespective of year, was 3,570 seals (CV =0.06). This is not an abundance estimate for all spotted seals in the Bering Sea, because it does not account for animals in the water, and we did not survey the Asian coast and some islands. Also, spotted seals and harbor seals, Phoca vitulina, are too similar in appearance to be identified accurately from the air, so our results probably include a mix of these species where their ranges overlap.

Sea Turtle Observations at Explosive Removals of Energy Structures

Observers were placed at offshore sites to monitor and protect sea turtles during explosive removals of oil and gas structures in the Gulf of Mexico off Louisiana and Texas. Data collected during more than 6,500 hours of monitoring at 106 structure removals in 1992 provided information on sea turtle distribution. Eighteen individuals were observed including 10 loggerheads, 2 leatherbacks, 1 hawksbill, and 5 unidentified sea turtles. The observation rate (individuals per monitoring hour) of sea turtles was about 30 times higher during aerial surveys than during day or night suiface surveys.

A hydraulic investigation of the River Lune.

Historic film on the River Lune, North England, UK. It shows the River Lune near its estuary at Lancaster. The film was made in the summer of 1972 over several weeks and is 14:25 minutes long. It combines aerial shots of the River, scientific and hydraulic work by the University of Salford which worked on a new weir of the Lune (Skerton Weir). Audio commentary explains the work. The film was produced by Cinephoto House, Manchester, on behalf of the predecessor orgenaisation of the Environment Agency, UK. The intended audience of the film is unknown.

An ecological characterization of Salt River Bay National Historical Park and Ecological Preserve, U.S. Virgin Islands

Salt River Bay National Historical Park and Ecological Preserve (hereafter, SARI or the park) was created in 1992 to preserve, protect, and interpret nationally significant natural, historical, and cultural resources (United States Congress 1992). The diverse ecosystem within it includes a large mangrove forest, a submarine canyon, coral reefs, seagrass beds, coastal forests, and many other natural and developed landscape elements. These ecosystem components are, in turn, utilized by a great diversity of flora and fauna. A comprehensive spatial inventory of these ecosystems is required for successful management. To meet this need, the National Oceanic and Atmospheric Administration (NOAA) Biogeography Program, in consultation with the National Park Service (NPS) and the Government of the Virgin Islands Department of Planning and Natural Resources (VIDPNR), conducted an ecological characterization. The characterization consists of three complementary components: a text report, digital habitat maps, and a collection of historical aerial photographs. This ecological characterization provides managers with a suite of tools that, when coupled with the excellent pre-existing body of work on SARI resources, enables improved research and monitoring activities within the park (see Appendix F for a list of data products).

Mapping the shallow-water coral ecosystems of the Freely Associated States: an implementation plan

This Freely Associated States Shallow-water Coral Ecosystem Mapping Implementation Plan (FAS MIP) presents a framework for the development of shallow-water (~0–40 m; 0–22 fm) benthic habitat and possibly bathymetric maps of critical areas of the Freely Associated States (FAS). The FAS is made up of three self-governing groups of islands and atolls—the Republic of Palau (Palau), the Federated States of Micronesia (FSM), and the Republic of the Marshall Islands (RMI)—that are affiliated with the United States through Compacts of Free Association. This MIP was developed with extensive input from colleges, national and state regulatory and management agencies, federal agencies, non-governmental organizations, and individuals involved in or supporting the conservation and management of the FAS’s coral ecosystems. A list of organizations and individuals that provided input to the development of this MIP is provided in Appendix 1. This MIP has been developed to complement the Coral Reef Mapping Implementation Plan (2nd Draft) released in 1999 by the U.S. Coral Reef Task Force’s Mapping and Information Synthesis Working Group. That plan focused on mapping United States and FAS shallow-water (then defined as <30 m) coral reefs by 2009, based on available funding and geographic priorities, using primarily visual interpretation of aerial photography and satellite imagery. This MIP focuses on mapping the shallow-water (now defined as 0–40 m, rather than 0–30 m) coral ecosystems of the FAS using a suite of technologies and map development procedures. Both this FAS MIP and the 1999 Coral Reef Mapping Implementation Plan (2nd Draft) support to goals of the National Action Plan to Conserve Coral Reefs (U.S. Coral Reef Task Force, 2000). This FAS MIP presents a framework for mapping the coral ecosystems of the FAS and should be considered an evolving document. As priorities change, funding opportunities arise, new data are collected, and new technologies become available, the information presented herein will change.

Literature review for a resource characterization of Cape Romain National Wildlife Refuge

Through research aimed at understanding the coastal environment, surveys designed to help manage the resource, and national programs to monitor environmental condition, we see a picture of a dynamic ecosystem that is Cape Romain National Wildlife Refuge (CRNWR). Currently, there are efforts underway to protect threatened species; monitor fish populations; and quantify the biological, physical, and chemical characteristics of this environment. The potential impacts to this system are just now being understood as ecological responses to human modification are observed and explained. As a starting point, this document compiles existing information about Cape Romain NWR in five topic areas and addresses the potential impacts to the Refuge. This review is intended to serve as a stepping stone to developing a research agenda in support of management of the Refuge. There are various sources of information on which to build a framework for monitoring conditions and detecting change to this environment. For instance, information on basic ecological function in estuarine environments has evolved over several decades. Long-term surveys of Southeast fisheries exist, as well as shellfish and sediment contaminants data from estuaries. Environmental monitoring and biological surveys at the Refuge continue. Recently, studies that examine the impacts to similar coastal habitats have been undertaken. This document puts past studies and ongoing work in context for Refuge managers and researchers. This report recommends that the next phase of this resource characterization focus on: • compiling relevant tabular and spatial data, as identified here, into a Geographic Information System (GIS) framework • assessing the abundance and diversity of fisheries utilizing CRNWR • delineating additional data layers, such as intertidal habitats and subtidal clam beds, from low-level aerial photography, hard copy maps, and other sources • continued inventories of plant and animal species dependent on the Refuge • monitoring physical and chemical environmental parameters using the methodology employed at National Estuarine Research Reserve System (NERRS) and other coastal sites, where appropriate • further definition of the potential risks to the Refuge and preparing responses to likely impacts.

Benthic habitats of Fish Bay, Coral Bay and the St. Thomas East End Reserve

NOAA’s National Centers for Coastal Ocean Science Biogeography Branch has mapped and characterized large portions of the coral reef ecosystems inside the U.S. coastal and territorial waters, including the U.S. Caribbean. The complementary protocols used in these efforts have enabled scientists and managers to quantitatively and qualitatively compare marine ecosystems in tropical U.S. waters. The Biogeography Branch used similar protocols to generate new benthic habitat maps for Fish Bay, Coral Bay and the St. Thomas East End Reserve (STEER). While this mapping effort marks the third time that some of these shallow-water habitats (≤40 m) have been mapped, it is the first time that nearly 100% of the seafloor has been characterized in each of these areas. It is also the first time that high resolution imagery describing seafloor depth has been collected in each of these areas. Consequently, these datasets provide new information describing the distribution of coral reef ecosystems and serve as a spatial baseline for monitoring change in the Fish Bay, Coral Bay and the STEER. Benthic habitat maps were developed for approximately 64.3 square kilometers of seafloor in and around Fish Bay, Coral Bay and the STEER. Twenty seven percent (17.5 square kilometers) of these habitat maps describe the seafloor inside the boundaries of the STEER, the Virgin Islands National Park and the Virgin Islands Coral Reef National Monument. The remaining 73% (46.8 square kilometers) describe the seafloor outside of these MPA boundaries. These habitat maps were developed using a combination of semi-automated and manual classification methods. Habitats were interpreted from aerial photographs and LiDAR (Light Detection and Ranging) imagery. In total, 155 distinct combinations of habitat classes describing the geology and biology of the seafloor were identified from the source imagery.