A hymenopterists' guide to the Hymenoptera Anatomy Ontology: utility, clarification, and future directions

Hymenoptera exhibit an incredible diversity of phenotypes, the result of similar to 240 million years of evolution and the primary subject of more than 250 years of research. Here we describe the history, development, and utility of the Hymenoptera Anatomy Ontology (HAO) and its associated applications. These resources are designed to facilitate accessible and extensible research on hymenopteran phenotypes. Outreach with the hymenopterist community is of utmost importance to the HAO project, and this paper is a direct response to questions that arose from project workshops. In a concerted attempt to surmount barriers of understanding, especially regarding the format, utility, and development of the HAO, we discuss the roles of homology, "preferred terms", and "structural equivalency". We also outline the use of Universal Resource Identifiers (URIs) and posit that they are a key element necessary for increasing the objectivity and repeatability of science that references hymenopteran anatomy. Pragmatically, we detail a mechanism (the "URI table") by which authors can use URIs to link their published text to the HAO, and we describe an associated tool (the "Analyzer") to derive these tables. These tools, and others, are available through the HAO Portal website (http://portal.hymao.org). We conclude by discussing the future of the HAO with respect to digital publication, cross-taxon ontology alignment, the advent of semantic phenotypes, and community-based curation.

A NEW GENUS AND SPECIES OF PHILOPTERIDAE (PHTHIRAPTERA: ISCHNOCERA) FROM THE TRUMPETERS (AVES: GRUIFORMES: PSOPHIIDAE)

A new chewing louse genus and species belonging to the Philopteridae, namely, Palmaellus inespectatus n. gen., n. sp., is described. The new genus is distinguished from the other ischnoceran genera hitherto described by its peculiar characters of the dorsal anterior head plate with 2 postero-lateral projections, pterothorax and abdomen with scarce chaetotaxy, male genitalia with simple mesomere and paramere lacking inner digitiform projection, and the genital region of female with postero-vulvar plates bearing setae. It is a parasite of the trumpeters, an avian family endemic to South America's Amazon Basin.

WOOD NATURAL RESISTANCE OF SEVEN FOREST SPECIES TO WHITE ROT CAUSED BY Pycnoporus sanguineus

This research evaluated the natural resistance of Platanus x acerifolia, Luehea divaricate, Carya illinoinensis, Peltophorum dubium, Araucaria angustifolia, Eucalyptus grandis and Hovenia dulcis, to accelerated decay of the white-rot fungus Pycnoporus sanguineus. The Specific Density at 12% was determinated. The accelerated decay test was conducted with glass bottles (capacity of 500 mL) filled with 100 g of moist soil, autoclaved, and kept at 25 degrees C. The initial establishment of fungal colonies on plates was supported by samples of Pinus elliottii sapwood. In this study, three samples of dimensions 9.0 x 25.0 x 25.0 mm were used for each species evaluated and, after 16 weeks of incubation, the percentage loss of mass was calculated. The degree of natural resistance was performed according to the percentages of mass loss. The results obtained from weight loss were compared by Tukey test at 5%. The natural resistance of woods was not influenced by specific gravity The wood of Carya illinoinensis, Eucalyptus grandis, Platanus x acerifolia, Luehea divaricata and Peltophorum dubium were classified as very resistant, Houvenia dulcis as resistant and Araucaria angustifolia as moderate resistant.

A description of the nymph of Anacroneuria ofaye Froehlich (Plecoptera: Perlidae) and a apparatus for rearing Neotropical stonefly species

The Neotropical genus Anacroneuria (Perlidae) is represented by more than 300 species. Among the Brazilian Anacroneuria, only the nymphs of two species have been described. In this paper, we described the nymph of A. ofaye Froehlich and an apparatus for rearing this genus. This is the first record of A. ofaye from Parana State, Brazil.

Do changes in carbon allocation account for the growth response to potassium and sodium applications in tropical Eucalyptus plantations?

Understanding the underlying mechanisms that account for the impact of potassium (K) fertilization and its replacement by sodium (Na) on tree growth is key to improving the management of forest plantations that are expanding over weathered tropical soils with low amounts of exchangeable bases. A complete randomized block design was planted with Eucalyptus grandis (W. Hill ex Maiden) to quantify growth, carbon uptake and carbon partitioning using a carbon budget approach. A combination of approaches including the establishment of allometric relationships over the whole rotation and measurements of soil CO2 efflux and aboveground litterfall at the end of the rotation were used to estimate aboveground net production (ANPP), total belowground carbon flux and gross primary production (GPP). The stable carbon isotope (delta C-13) of stem wood alpha-cellulose produced every year was used as a proxy for stomatal limitation of photosynthesis. Potassium fertilization increased GPP and decreased the fraction of carbon allocated belowground. Aboveground net production was strongly enhanced, and because leaf lifespan increased, leaf biomass was enhanced without any change in leaf production, and wood production (P-W) was dramatically increased. Sodium application decreased the fraction of carbon allocated belowground in a similar way, and enhanced GPP, ANPP and P-W, but to a lesser extent compared with K fertilization. Neither K nor Na affected delta C-13 of stem wood alpha-cellulose, suggesting that water-use efficiency was the same among the treatments and that the inferred increase in leaf photosynthesis was not only related to a higher stomatal conductance. We concluded that the response to K fertilization and Na addition on P-W resulted from drastic changes in carbon allocation.

The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome

Abstract Background The ongoing efforts to sequence the honey bee genome require additional initiatives to define its transcriptome. Towards this end, we employed the Open Reading frame ESTs (ORESTES) strategy to generate profiles for the life cycle of Apis mellifera workers. Results Of the 5,021 ORESTES, 35.2% matched with previously deposited Apis ESTs. The analysis of the remaining sequences defined a set of putative orthologs whose majority had their best-match hits with Anopheles and Drosophila genes. CAP3 assembly of the Apis ORESTES with the already existing 15,500 Apis ESTs generated 3,408 contigs. BLASTX comparison of these contigs with protein sets of organisms representing distinct phylogenetic clades revealed a total of 1,629 contigs that Apis mellifera shares with different taxa. Most (41%) represent genes that are in common to all taxa, another 21% are shared between metazoans (Bilateria), and 16% are shared only within the Insecta clade. A set of 23 putative genes presented a best match with human genes, many of which encode factors related to cell signaling/signal transduction. 1,779 contigs (52%) did not match any known sequence. Applying a correction factor deduced from a parallel analysis performed with Drosophila melanogaster ORESTES, we estimate that approximately half of these no-match ESTs contigs (22%) should represent Apis-specific genes. Conclusions The versatile and cost-efficient ORESTES approach produced minilibraries for honey bee life cycle stages. Such information on central gene regions contributes to genome annotation and also lends itself to cross-transcriptome comparisons to reveal evolutionary trends in insect genomes.

Effects of pretreatment on morphology, chemical composition and enzymatic digestibility of eucalyptus bark: a potentially valuable source of fermentable sugars for biofuel production – part 1

Abstract Background In recent years, the growing demand for biofuels has encouraged the search for different sources of underutilized lignocellulosic feedstocks that are available in sufficient abundance to be used for sustainable biofuel production. Much attention has been focused on biomass from grass. However, large amounts of timber residues such as eucalyptus bark are available and represent a potential source for conversion to bioethanol. In the present paper, we investigate the effects of a delignification process with increasing sodium hydroxide concentrations, preceded or not by diluted acid, on the bark of two eucalyptus clones: Eucalyptus grandis (EG) and the hybrid, E. grandis x urophylla (HGU). The enzymatic digestibility and total cellulose conversion were measured, along with the effect on the composition of the solid and the liquor fractions. Barks were also assessed using Fourier-transform infrared spectroscopy (FTIR), solid-state nuclear magnetic resonance (NMR), X-Ray diffraction, and scanning electron microscopy (SEM). Results Compositional analysis revealed an increase in the cellulose content, reaching around 81% and 76% of glucose for HGU and EG, respectively, using a two-step treatment with HCl 1%, followed by 4% NaOH. Lignin removal was 84% (HGU) and 79% (EG), while the hemicellulose removal was 95% and 97% for HGU and EG, respectively. However, when we applied a one-step treatment, with 4% NaOH, higher hydrolysis efficiencies were found after 48 h for both clones, reaching almost 100% for HGU and 80% for EG, in spite of the lower lignin and hemicellulose removal. Total cellulose conversion increased from 5% and 7% to around 65% for HGU and 59% for EG. NMR and FTIR provided important insight into the lignin and hemicellulose removal and SEM studies shed light on the cell-wall unstructuring after pretreatment and lignin migration and precipitation on the fibers surface, which explain the different hydrolysis rates found for the clones. Conclusion Our results show that the single step alkaline pretreatment improves the enzymatic digestibility of Eucalyptus bark. Furthermore, the chemical and physical methods combined in this study provide a better comprehension of the pretreatment effects on cell-wall and the factors that influence enzymatic digestibility of this forest residue.

Differences in diversity, structure, and variability between intertidal and subtidal meiofaunal assemblages

[EN] Meiofaunal assemblages from intertidal and shallow subtidal seabeds were studied at two sites (one dominated by volcanic sands and the other by organogenic sands) at Tenerife (Canary Islands, NE Atlantic Ocean) throughout an entire year (May 2000?April 2001). Specifically, we aimed (i) to test for differences in diversity, structure, and stability between intertidal and subtidal meiofaunal assemblages, and (ii) to determine if differences in the meiofaunal assemblage structure may be explained by environmental factors (granulometric composition, availability of organic matter, and carbonate content in sediments). A total of 103,763 meiofaunal individuals were collected, including 203 species from 19 taxonomic groups (Acari, Amphipoda, Cnidaria, Copepoda, Echinodermata, Gastrotricha, Isopoda, Insecta, Kinorrhyncha, Misidacea, Nematoda, Nemertini, Oligochaeta, Ostracoda, Polychaeta, Priapulida, Sipuncula, Tanaidacea, and Turbellaria). Nematodes were the most abundant taxonomic group. Species diversity was higher in the subtidal than in the intertidal zone at both sites, as a result of the larger dominance of a few species in the intertidal zone. The meiofaunal assemblage structure was different between tidal levels at both sites, the intertidal presenting greater temporal variability (multivariate dispersion) in the meiofaunal assemblage structure than the subtidal. Sediment grain size, here quantified by the different granulometric fractions, explained the variability in meiofaunal assemblage structure to a greater extent than the percentage of carbonates, a variable linked to sediment origin. This study revealed differences in diversity, assemblage structure, and variability between intertidal and subtidal meiofauna.

Analisi e ottimizzazione termodinamica del sistema di generazione di potenza di un impianto solare a concentrazione ibrido

Impianto solare termodinamico a concentrazione per la produzione di energia elettrica.

Innervazione articolare della spalla e del ginocchio nel cane e modificazioni in corso di osteoartrite

L’osteoartrite (OA) rappresenta un gruppo di patologie a carico delle articolazioni che si stima colpisca più del 20% dei cani con età superiore a un anno. Si tratta di una condizione dove entrano in gioco fattori biomeccanici e biochimici, che si esprime clinicamente con zoppia e dolore. Le ricerche effettuate negli ultimi decenni hanno dimostrato il coinvolgimento dell’innervazione nocicettiva e simpatica nell’insorgenza e nel mantenimento del dolore e dell’infiammazione che caratterizzano l’OA. In questa, infatti, svolgono un ruolo cruciale i neuropeptidi, quali la sostanza P (SP) ed il peptide correlato al gene della calcitonina (CGRP), ed i neuromediatori simpatici liberati alla periferia rispettivamente dalle fibre nocicettive e dalle fibre simpatiche postgangliari. Col presente lavoro ci si è posti l’obiettivo di definire il tipo ed il numero di fibre nervose che innervano l’articolazione della spalla e del ginocchio di cane in soggetti esenti da patologia articolare ed affetti da osteoartrite. Campioni di legamenti e capsula articolare della spalla e della parte craniolaterale della capsula articolare del ginocchio sono stati sottoposto a reazione di doppia immunofluorescenza indiretta volta alla identificazione del numero complessivo di fibre nervose presenti e della percentuale di fibre SP, CGRP e simpatiche positive. I risultati testimoniano come in corso di OA nel cane venga ad alterarsi l’equilibrio tra innervazione sensitiva e simpatica. Infatti, lo studio quantitativo ha evidenziato che nei soggetti affetti da OA si assiste ad un incremento della percentuale di fibre SP positive e ad un decremento di quelle simpatiche. Si ritiene che l’integrità di questi due tipi d’innervazione sia necessaria per l’omeostasi tissutale e che un aumento delle fibre nocicettive e una riduzione di quelle simpatiche abbia un effetto proinfiammatorio e iperalgesico. È stata inoltre riscontrata una differente densità di fibre nervose a seconda del tipo di patologia considerata.

Revision der paläarktischen Arten der Gattung Lygus Hahn (Heteroptera, Miridae)

Als Ergebnis der Revision der Gattung Lygus Hahn (Heteroptera, Miridae, Insecta) wurden die fünf neuen Arten beschrieben: L. sibiricus Aglyamzyanov, 1990, L. orientis Aglyamzyanov, 1994, L. izyaslavi Aglyamzyanov, 1994, L. monticola Aglyamzyanov, 1994 und L. martensi Aglyamzyanov, 2003. Die vier Speziessnamen wurden synonymisiert: L. dracunculi Josifov, 1992, L. alashanensis Qi, 1993, L. renati Schwartz, 1998 (L. elegans Aglyamzyanov, 1994) = L. poluensis (Wagner, 1967) und L. kerzhneri Qi, 1993 = L. punctatus (Zetterstedt, 1838). Artstatus von L. israelensis Linnavuori, 1962 wurde wiederhergestellt. Nach aktuellen Angaben wurden in der Paläarktis 19 Lygus-Arten festgestellt: L. discrepans Reuter, 1906; L. gemellatus (Herrich-Schaeffer, 1835); L. hsiaoi Zheng & Yu, 1992; L. israelensis Linnavuori, 1962; L. italicus Wagner, 1950; L. izyaslavi Aglyamzyanov, 1994; L. maritimus Wagner, 1949; L. martensi Aglyamzyanov, 2003; L. monticola Aglyamzyanov, 1994; L. orientis Aglyamzyanov, 1994; L. pachycnemis Reuter, 1879; L. paradiscrepans Zheng & Yu, 1992; L. poluensis (Wagner, 1967); L. pratensis (Linnaeus, 1758); L. punctatus (Zetterstedt, 1838); L. rugulipennis Poppius, 1911; L. sibiricus Aglyamzyanov, 1990; L. tibetanus Zheng & Yu, 1992 und L. wagneri Remane, 1955. Es wurden die diagnostischen Merkmale analysiert, eine Bestimmungstabelle erstellt und die Areale der Verbreitung der einigen Arten präzisiert.

Early steps in ventral nerve cord development in chelicerates and myriapods and formation of brain compartments in spiders

The central point of this work is the investigation of neurogenesis in chelicerates and myriapods. By comparing decisive mechanisms in neurogenesis in the four arthropod groups (Chelicerata, Crustacea, Insecta, Myriapoda) I was able to show which of these mechanisms are conserved and which developmental modules have diverged. Thereby two processes of embryonic development of the central nervous system were brought into focus. On the one hand I studied early neurogenesis in the ventral nerve cord of the spiders Cupiennius salei and Achaearanea tepidariorum and the millipede Glomeris marginata and on the other hand the development of the brain in Cupiennius salei.rnWhile the nervous system of insects and crustaceans is formed by the progeny of single neural stem cells (neuroblasts), in chelicerates and myriapods whole groups of cells adopt the neural cell fate and give rise to the ventral nerve cord after their invagination. The detailed comparison of the positions and the number of the neural precursor groups within the neuromeres in chelicerates and myriapods showed that the pattern is almost identical which suggests that the neural precursors groups in these arthropod groups are homologous. This pattern is also very similar to the neuroblast pattern in insects. This raises the question if the mechanisms that confer regional identity to the neural precursors is conserved in arthropods although the mode of neural precursor formation is different. The analysis of the functions and expression patterns of genes which are known to be involved in this mechanism in Drosophila melanogaster showed that neural patterning is highly conserved in arthropods. But I also discovered differences in early neurogenesis which reflect modifications and adaptations in the development of the nervous systems in the different arthropod groups.rnThe embryonic development of the brain in chelicerates which was investigated for the first time in this work shows similarities but also some modifications to insects. In vertebrates and arthropods the adult brain is composed of distinct centres with different functions. Investigating how these centres, which are organised in smaller compartments, develop during embryogenesis was part of this work. By tracing the morphogenetic movements and analysing marker gene expressions I could show the formation of the visual brain centres from the single-layered precheliceral neuroectoderm. The optic ganglia, the mushroom bodies and the arcuate body (central body) are formed by large invaginations in the peripheral precheliceral neuroectoderm. This epithelium itself contains neural precursor groups which are assigned to the respective centres and thereby build the three-dimensional optical centres. The single neural precursor groups are distinguishable during this process leading to the assumption that they carry positional information which might subdivide the individual brain centres into smaller functional compartments.rn

Studio anatomico dei muscoli della spalla e del braccio in Pernis apivorus, Accipiter gentilis ed Accipiter nisus

Recentemente, vari ricercatori si sono concentrati sulle proprietà funzionali dei muscoli, sulla meccanica e sulla cinematica legata al volo, ma senza la possibilità di consultare un’adeguata letteratura poiché assente o incompleta. Si è quindi ritenuto utile studiare la miologia della regione della spalla e del braccio di specie non in precedenza esaminate e che mostrassero differenti stili di volo, al fine di creare una base di informazioni per futuri studi funzionali. Tutte le specie prese in esame sono membri della famiglia degli Accipitridae e nello specifico si sono selezionati: il Falco pecchiaiolo (Pernis apivorus Linnaeus, 1758), l’Astore comune (Accipiter gentilis Linnaeus, 1758) e lo Sparviero eurasiatico (Accipiter nisus Linnaeus, 1758). Questi animali attuano stili di volo differenti e sono stati pertanto scelti per capire se diverse performance di volo potessero indurre una differenziazione dell’apparato muscolare. La comparazione dei dati raccolti durante questo studio con quelli presenti in letteratura in altre specie aviarie ha evidenziato che, mentre alcuni muscoli non sembrano andare incontro a grandi modificazioni nei rapaci, altri invece presentano una grande eterogeneità. In particolare, grazie alle caratteristiche dei diversi muscoli, si è potuto raggruppare questi ultimi in base a possibili funzioni comuni: a) muscoli che concorrono a stabilizzare l’ala rispetto al tronco e che assorbono le forze generate durante il volo; b) muscoli con possibile ruolo nel controllo della rotazione dell’omero; c) muscoli con possibile funzione propriocettiva. Il presente studio ha inoltre evidenziato, nei muscoli esaminati, alcune similitudini e molteplici peculiarità anatomiche non precedentemente segnalate in letteratura. Si ritiene che questo studio macroscopico possa rappresentare un punto di partenza per futuri studi microscopici o elettrofisiologici, a dimostrazione dell’importanza della dissezione quale primo strumento di indagine.

Funktionsaufklärung von Atmungsproteinen in Insekten

Globine sind kleine globuläre Proteine mit nahezu ubiquitärem Vorkommen in allen Tiergruppen. Sie weisen eine typische Sandwichstruktur auf, die in der Regel aus acht α-Helices mit einer zentralen prosthetischen Häm-Gruppe besteht und die Proteine zur Bindung gasförmiger Liganden befähigt. Die Funktionen der Globine reichen von O2-Transport und – Speicherung, über eine Beteiligung bei der Entgiftung reaktiver Sauerstoff- und Stickstoffspezies bis hin zu sensorischen physiologischen Aufgaben. Innerhalb der Klasse der Insekten schien das Vorhandensein von Globinen zunächst auf Insekten mit offensichtlich hypoxischen Habitaten beschränkt zu sein. Die Entdeckung des Globins glob1 in Drosophila melanogaster deutete jedoch eine sehr viel weitere Verbreitung der Globine in Insekten an, die sich durch die Identifizierung von Globingenen in einer Vielzahl von normoxisch lebenden Insekten, wie z.B. Apis mellifera oder Aedes aegypti bestätigte. D. melanogaster besitzt drei Globine, glob1, glob2 und glob3. Glob1 ist eng mit anderen intrazellulären Insektenglobinen verwandt, was zu der Annahme führte, dass es sich bei glob1 um das ursprüngliche und bei glob2 und glob3 um abgeleitete D. melanogaster Globine handelt. Glob1 wird in allen Entwicklungsstadien exprimiert, wobei die Hauptexpressionsorte der Fettkörper und das Tracheensystem sind. Die Transkription des glob1 startet von zwei alternativen Promotoren (Promotor I und II), wodurch in Kombination mit alternativem Splicing vier Transkriptvarianten (Isoform A-D) entstehen, deren Translation jedoch in einer Proteinvariante (glob1) resultiert. Hypoxische Bedingungen führen zu einer vermutlich HIF (=‚hypoxia-inducible factor‘) -vermittelten Abnahme der glob1 Genexpression, wohingegen Hyperoxie eine leichte Zunahme der glob1 mRNA Menge bewirkt. Der mithilfe des UAS/Gal4- Systems erzeugte, RNAi-vermittelte glob1 Knockdown führt zu einer schlechteren Überlebensrate adulter Fliegen unter hypoxischen Bedingungen, einer verkürzten Erholungszeit nach hypoxischem Stupor in Weibchen sowie zu einer erhöhten Resistenz gegenüber dem ROS (=‘reactive oxygen species‘) -generierenden Herbizid Paraquat in Larven und adulten Weibchen. Diese Beobachtungen sprechen für eine Funktion des Drosophila glob1 innerhalb der O2-Versorgung. Unter hyperoxischen Bedingungen hingegen wurde kein Unterschied zwischen Fliegen mit wildtypischer und manipulierter glob1-Expression festgestellt, wodurch eine Beteiligung des glob1 bei der Entgiftung reaktiver Sauerstoffspezies als mögliche Funktion vorerst ausscheidet. Bei glob2 und glob3 handelt es sich um duplizierte Gene. Auf phylogenetischen Rekonstruktionen basierend konnte die Entstehung der Globin-Duplikate auf ein Duplikationsereignis vor der Radiation des Subgenus Sophophora vor mindestens 40 Millionen Jahren zurückgeführt werden. Die durchgeführten Analysen zur molekularen Sequenzevolution der Globin-Duplikate deuten darauf hin, dass glob2 und glob3 nach der Duplikation eine Kombination aus Sub- und Neo-Funktionalisierungsprozessen durchlaufen haben. Glob2 und glob3 zeigen eine deckungsgleiche mRNA Expression, die auf die männliche Keimbahn beschränkt ist. Aufgrund des hohen Konservierungsgrads der für die Häm- und O2-Bindung essentiellen Aminosäuren kann von der Funktionalität beider Proteine ausgegangen werden. Die streng auf die männliche Keimbahn begrenzte Expression von glob2 und glob3 deutet auf eine Rolle der Globin-Duplikate innerhalb der Spermatogenese hin, die möglicherweise in einem Schutz der Spermatogenese vor oxidativem Stress besteht. Auch eine Beteiligung beim korrekten Ablauf der Spermien-Individualisierung, beispielsweise durch Regulation von Apoptoseprozessen wäre denkbar.

Response of chironomid assemblages to environmental change during the early Late-glacial at Gerzensee, Switzerland

Prior to ca. 14,660 yr BP, during the early Late-glacial (Oldest Dryas), larval assemblages of Chironomidae (Insecta: Diptera) in Gerzensee, Switzerland, were dominated by cold stenothermic taxa as well as by taxa typical of subalpine lakes today. This was the coldest period of the entire sequence. After ca. 14,660 yr BP, in the Late Glacial Interstadial (Bølling–Allerød), a temperature increase is recorded by a sharp rise in the oxygen-isotope ratio in lake marl and by an increase in the organic-matter content of the sediments. Changes in the chironomid fauna then are consistent with rising temperatures. This warming trend is interrupted between 14,070 and 13,940 yr BP, coinciding with the GI-1d cold oscillation, but the change in the chironomid assemblage is more consistent with a response to increasing lake depth and density of aquatic macrophytes than falling temperature. A rise in cold-adapted chironomid taxa between 13,840 and 13,710 yr BP suggests that summer air temperatures may have declined. Changes in the chironomid assemblage after 13,710 yr BP suggest a decline in submerged macrophytes coupled with a rise in lake productivity and summer temperature, although the latter is not reflected in the oxygen-isotope record. This suggests that there may have been increasing seasonality during this period when summer temperatures were rising, driven by rising summer insolation, and winters becoming cooler, which is largely reflected in the oxygen-isotope record. A decline in thermophilic chironomids and a rise in cold-adapted taxa after 13,180 yr BP suggest a response to cooling at the beginning of the Gerzensee Oscillation.