Fine Mapping of qroot-yield-1.06, a QTL for Root, Plant Vigor and Yield in Maize

Root-yield-1.06 is a major QTL affecting root system architecture (RSA) and other agronomic traits in maize. The effect of this QTL has been evaluated with the development of near isogenic lines (NILs) differing at the QTL position. The objective of this study was to fine map qroot-yield-1.06 by marker-assisted searching for chromosome recombinants in the QTL interval and concurrent root phenotyping in both controlled and field conditions, through successive generations. Complementary approaches such as QTL meta-analysis and RNA-seq were deployed in order to help prioritizing candidate genes within the QTL target region. Using a selected group of genotypes, field based root analysis by ‘shovelomics’ enabled to accurately collect RSA information of adult maize plants. Shovelomics combined with software-assisted root imaging analysis proved to be an informative and relatively highly automated phenotyping protocol. A QTL interval mapping was conducted using a segregating population at the seedling stage grown in controlled environment. Results enabled to narrow down the QTL interval and to identify new polymorphic markers for MAS in field experiments. A collection of homozygous recombinant NILs was developed by screening segregating populations with markers flanking qroot-yield-1.06. A first set of lines from this collection was phenotyped based on the adapted shovelomics protocol. QTL analysis based on these data highlighted an interval of 1.3 Mb as completely linked with the target QTL but, a larger safer interval of 4.1 Mb was selected for further investigations. QTL meta-analysis allows to synthetize information on root QTLs and two mQTLs were identified in the qroot-yield-1.06 interval. Trascriptomics analysis based on RNA-seq data of the two contrasting QTL-NILs, confirmed alternative haplotypes at chromosome bin 1.06. qroot-yield-1.06 has now been delimited to a 4.1-Mb interval, and thanks to the availability of additional untested homozygous recombinant NILs, the potentially achievable mapping resolution at qroot-yield-1.06 is c. 50 kb.

Measurement of the forward-backward asymmetry of Z boson decays in electron-positron pairs with the ATLAS detector in proton-proton collisions at root out s = 7TeV at the LHC

In this thesis the measurement of the effective weak mixing angle wma in proton-proton collisions is described. The results are extracted from the forward-backward asymmetry (AFB) in electron-positron final states at the ATLAS experiment at the LHC. The AFB is defined upon the distribution of the polar angle between the incoming quark and outgoing lepton. The signal process used in this study is the reaction pp to zgamma + X to ee + X taking a total integrated luminosity of 4.8\,fb^(-1) of data into account. The data was recorded at a proton-proton center-of-mass energy of sqrt(s)=7TeV. The weak mixing angle is a central parameter of the electroweak theory of the Standard Model (SM) and relates the neutral current interactions of electromagnetism and weak force. The higher order corrections on wma are related to other SM parameters like the mass of the Higgs boson.rnrnBecause of the symmetric initial state constellation of colliding protons, there is no favoured forward or backward direction in the experimental setup. The reference axis used in the definition of the polar angle is therefore chosen with respect to the longitudinal boost of the electron-positron final state. This leads to events with low absolute rapidity have a higher chance of being assigned to the opposite direction of the reference axis. This effect called dilution is reduced when events at higher rapidities are used. It can be studied including electrons and positrons in the forward regions of the ATLAS calorimeters. Electrons and positrons are further referred to as electrons. To include the electrons from the forward region, the energy calibration for the forward calorimeters had to be redone. This calibration is performed by inter-calibrating the forward electron energy scale using pairs of a central and a forward electron and the previously derived central electron energy calibration. The uncertainty is shown to be dominated by the systematic variations.rnrnThe extraction of wma is performed using chi^2 tests, comparing the measured distribution of AFB in data to a set of template distributions with varied values of wma. The templates are built in a forward folding technique using modified generator level samples and the official fully simulated signal sample with full detector simulation and particle reconstruction and identification. The analysis is performed in two different channels: pairs of central electrons or one central and one forward electron. The results of the two channels are in good agreement and are the first measurements of wma at the Z resonance using electron final states at proton-proton collisions at sqrt(s)=7TeV. The precision of the measurement is already systematically limited mostly by the uncertainties resulting from the knowledge of the parton distribution functions (PDF) and the systematic uncertainties of the energy calibration.rnrnThe extracted results of wma are combined and yield a value of wma_comb = 0.2288 +- 0.0004 (stat.) +- 0.0009 (syst.) = 0.2288 +- 0.0010 (tot.). The measurements are compared to the results of previous measurements at the Z boson resonance. The deviation with respect to the combined result provided by the LEP and SLC experiments is up to 2.7 standard deviations.

Realizzazione di un'applicazione di Projection Mapping con OpenFrameworks

Il Projection Mapping è una tecnologia che permette di proiettare delle immagini sulla superficie di uno o più oggetti, anche di forma irregolare, trasformandoli in display interattivi. Il suo utilizzo, abbinato a suoni e musiche, permette di creare una narrazione audio-visuale. La suggestione e l’emozione scaturite dalla visione di una performance di Projection Mapping su di un monumento pubblico, hanno stimolato la mia curiosità e mi hanno spinto a cercare di capire se era possibile realizzare autonomamente qualcosa di analogo. Obiettivo di questa tesi è perciò spiegare cos’è il Projection Mapping e fornire una serie di indicazioni utili per realizzarne un’applicazione interattiva con OpenFrameworks (un framework open-source in C++) e hardware a basso costo (un computer, un videoproiettore e un sensore Kinect).

Tecniche automatiche di mapping e localizzazione in ambienti indoor

Il mapping di grandezze fisiche risulta estremamente importante, essendo in grado di fornire un adeguato supporto per la localizzazione e il monitoraggio di parametri ambientali sensibili. Nel caso indoor, in assenza di un sistema di localizzazione di riferimento analogo al GPS per il caso outdoor, sfruttando appieno le potenzialità della sensoristica a bordo degli smartphone, si è fatto progressivamente strada il mapping di grandezze fisiche quali, ad esempio, il segnale Wi-Fi e il campo magnetico terrestre. In questo caso il mapping, senza richiedere alcuna infrastruttura e coadiuvato dall'utilizzo di dispositivi portatili largamente diffusi ad uso quotidiano, rappresenta una soluzione relativamente recente ridefinibile come Mobile Crowd Sensing. Il MCS rappresenta un nuovo paradigma di servizio, volto a sfruttare l'interconnettività tra dispositivi portatili per effettuare misurazioni di caratteristiche ambientali in maniera automatizzata, aggregandole in un sistema cloud usufruibile ad una vasta comunità. Tuttavia , il considerevole flusso di dati generato, la variabilità temporale delle grandezze di interesse e il rumore insito nelle misurazioni costituiscono problematiche fondamentali per l'utilizzo e la gestione delle misurazioni effettuate. Per tali motivi l'attività di tesi ha previsto i seguenti obiettivi: (i) fornire una panoramica delle principali tecniche e tecnologie di localizzazione volta a motivare l'importanza del mapping di grandezze fisiche ambientali; (ii) individuazione di grandezze fisiche appetibili per la creazione di mappe affidabili e realizzabili nei contesti applicativi più disparati, sfruttando risorse già presenti nell'ambiente; (iii) sviluppo di un algoritmo statistico in grado di fornire una stima accurata dell'andamento spaziale della grandezza di interesse attraverso un numero limitato di misurazioni, mantenendo la compatibilità con processi MCS e una bassa complessità computazionale. L’algoritmo sviluppato è stato validato attraverso simulazioni e misurazioni svolte in ambienti reali. In particolare, prove sperimentali sono state effettuate nell’arena Vicon nei laboratori DEI dell’Università di Bologna, sede Cesena, concepita dal gruppo di ricerca Casy.

Noise mapping of highly trafficked roads of the province of Bologna according to D.Lgs. 194/2005

The European Community has stressed the importance of achieving a common understanding to deal with the environmental noise through community actions of the Member States. This implies the use of harmonized indicators and specific information regarding the values of indicators, the exceedance of limits and the number of people and dwellings exposed to noise. The D.Lgs. 149/2005 in compliance with the European Directive 2002/49/EC defines methodologies, noise indicators and types of outputs required. In this dissertation the work done for the noise mapping of highly trafficked roads of the Province of Bologna will be reported. The study accounts for the environmental noise generated by the road infrastructure outside the urban agglomeration of Bologna. Roads characterized by an annual traffic greater than three millions of vehicles will be considered. The process of data collection and validation will be reported, as long as the implementation of the calculation method in the software and the procedure to create and calibrate the calculation model. Results will be provided as required by the legislation, in forms of maps and tables. Moreover results regarding each road section accounted will be combined to gain a general understanding of the situation of the overall studied area. Although the understanding of the noise levels and the number of people exposed is paramount, it is not sufficient to develop strategies of noise abatement interventions. Thus a further step will be addressed: the creation of priority maps as the basis of action plans for organizing and prioritizing solutions for noise reduction and abatement. Noise reduction measures are reported in a qualitative way in the annex and constitute a preliminary research.

Statistical mapping of real environments with uwb radars

In this master thesis I evaluated the performance of a Ultra-Wide Bandwidth (UWB) radar system for indoor environments mapping. In particular, I used a statistical Bayesian approach which is able to combine all the measurements collected by the radar, including system non-idealities such as the error on the estimated antenna pointing direction or on the estimated radar position. First I verified through simulations that the system was able to provide a sufficiently accurate reconstruction of the surrounding environment despite the limitations imposed by the UWB technology. In fact, the emission of UWB pulses is limited in terms of transmitted power by international regulations. Motivated by the promising results obtained through simulations, I successively carried out a measurement campaign in a real indoor environment using a UWB commercial device. The obtained results showed that the UWB radar system is capable of providing an accurate reconstruction of indoor environments also adopting not directional antennas.

Analisi del degassamento di CO2 diffuso dal suolo presso la Solfatara di Pozzuoli (Napoli, Italia): Misura, mapping e quantificazione del flusso totale.

Il presente lavoro ha come obiettivo la descrizione dello studio del degassamento diffuso di CO2 (acquisizione dei dati e loro trattazione) effettuato nell'area vulcanica dei Campi Flegrei (NA), nello specifico nell'area della Solfatara di Pozzuoli. Questo infatti rappresenta attualmente il punto di massimo rilascio di fluidi ed energia dell'intero Distretto Vulcanico Flegreo attraverso attività quali fumarole e degassamento diffuso dal suolo, nonché deformazioni del terreno (bradisismo). Tramite l'acquisizione dei valori di flusso diffuso e delle temperature dei primi 10 cm di suolo, attraverso una trattazione dei dati statistica e geostatistica, è stato possibile distinguere e caratterizzare le sorgenti di CO2 (biologica o vulcanica), la realizzazione di sviluppo di mappe di probabilità e di flusso medio e la quantificazione dell'output totale giornaliero di CO2. Il lavoro è stato suddiviso in due fasi principali: 1. La prima fase ha riguardato l'acquisizione dei dati sul campo nei giorni 19 e 20 marzo 2015, tramite l'utilizzo di una camera d'accumulo ed un termometro munito di sonda, in 434 punti all'interno del cratere della Solfatara e nelle aree circostanti. 2. Nella seconda fase sono stati elaborati i dati, utilizzando il metodo statistico GSA (Graphical Statistic Approach) ed il metodo geostatistico della simulazione sequenziale Gaussiana (sGs). Tramite il GSA è stato possibile ripartire i dati in popolazioni e definire una media (con relativa varianza) per ognuna di esse. Con la sGs è stato possibile trattare i dati, considerando la loro distribuzione spaziale, per simulare valori per le aree prive di misurazioni; ciò ha permesso di generare delle mappe che mostrassero l'andamento dei flussi e la geometria della struttura del degassamento diffuso (Diffuse Degassing Structure, DDS; Chiodini et al., 2001). Infine i dati ottenuti sono stati confrontati con i risultati di precedenti studi e si è messo in relazione la geometria e l'intensità di degassamento con la geologia strutturale dell'area flegrea indagata.

Equazioni stocastiche backward nel mercato delle emissioni

In questa tesi viene esposto il modello EU ETS (European Union Emission Trading Scheme) per la riduzione delle emissoni di gas serra, il quale viene formalizzato matematicamente da un sistema di FBSDE (Forward Backward Stochastic Differential Equation). Da questo sistema si ricava un'equazione differenziale non lineare con condizione al tempo finale non continua che viene studiata attraverso la teoria delle soluzioni viscosità. Inoltre il modello viene implementato numericamente per ottenere alcune simulazioni dei processi coinvolti.

Web Mapping: dai GIS ai sistemi per la geolocalizzazione

L'elaborato tratta dell'evoluzione dei sistemi di raccolta dati geografici e mappatura grazie all'utilizzo delle tecnologie informatiche e di come sia cambiato il loro utilizzo nel corso del tempo e l'utenza che ne fa uso. Viene anche trattata in maniera tecnica la struttura che compone uno di questi sistemi per permettere l'interazione via web con una mappa digitale. Si effettuano inoltre ipotesi su possibili sviluppi futuri di tali tecnologie.

Percutaneous access of the epicardial space for mapping ventricular and supraventricular arrhythmias in patients with and without prior cardiac surgery

There is a paucity of data on the success rates of achieving percutaneous epicardial access in different groups of patients.

Catheter ablation of recurrent scar-related ventricular tachycardia using electroanatomical mapping and irrigated ablation technology: results of the prospective multicenter Euro-VT-study

Ventricular tachycardia (VT) late after myocardial infarction is an important contributor to morbidity and mortality. This prospective multicenter study assessed the efficacy and safety of electroanatomical mapping in combination with open-saline irrigated ablation technology for ablation of chronic recurrent mappable and unmappable VT in remote myocardial infarction.

Lumbar intervertebral disc abnormalities: comparison of quantitative T2 mapping with conventional MR at 3.0 T

To assess the relationship of morphologically defined lumbar disc abnormalities with quantitative T2 mapping.

Evaluation of cartilage repair tissue after matrix-associated autologous chondrocyte transplantation using a hyaluronic-based or a collagen-based scaffold with morphological MOCART scoring and biochemical T2 mapping: preliminary results

In cartilage repair, bioregenerative approaches using tissue engineering techniques have tried to achieve a close resemblance to hyaline cartilage, which might be visualized using advanced magnetic resonance imaging.

Quantitative T2 mapping of knee cartilage: differentiation of healthy control cartilage and cartilage repair tissue in the knee with unloading - initial results

Purpose: To prospectively determine on T2 cartilage maps the effect of unloading during a clinical magnetic resonance (MR) examination in the postoperative follow-up of patients after matrix-associated autologous chondrocyte transplantation (MACT) of the knee joint. Materials and Methods: Ethical approval for this study was provided by the local ethics commission, and written informed consent was obtained. Thirty patients (mean age, 35.4 years +/- 10.5) with a mean postoperative follow-up period of 29.1 months +/- 24.4 were enrolled. A multiecho spin-echo T2-weighted sequence was performed at the beginning (early unloading) and end (late unloading) of the MR examination, with an interval of 45 minutes. Mean and zonal region of interest T2 measurements were obtained in control cartilage and cartilage repair tissue. Statistical analysis of variance was performed. Results: The change in T2 values of control cartilage (early unloading, 50.2 msec +/- 8.4; late unloading, 51.3 msec +/- 8.5) was less pronounced than the change in T2 values of cartilage repair tissue (early unloading, 51.8 msec +/- 11.7; late unloading, 56.1 msec +/- 14.4) (P = .024). The difference between control cartilage and cartilage repair tissue was not significant for early unloading (P = .314) but was significant for late unloading (P = .036). Zonal T2 measurements revealed a higher dependency on unloading for the superficial cartilage layer. Conclusion: Our results suggest that T2 relaxation can be used to assess early and late unloading values of articular cartilage in a clinical setting and that the time point of the quantitative T2 measurement affects the differentiation between native and abnormal articular cartilage. (c) RSNA, 2010.

T2 and T2* mapping in patients after matrix-associated autologous chondrocyte transplantation: initial results on clinical use with 3.0-Tesla MRI

To use T2 and T2* mapping in patients after matrix-associated autologous chondrocyte transplantation (MACT) of the knee, and to compare and correlate both methodologies.