1998 annual report on fisheries in the North west incorporating the annual summary of fishery statistics.

This fisheries report summarises national and regional developments focussing on the North West region of the Environment Agency. The North West region covers around 14,000 square km, from Cheshire in the south to its northern border with Scotland. This report provides national and regional developments,and special projects, including fish stocking assessments, radiotracking, and Cumbria surveys. Salmon and sea trout catches, including rod and line and net catches appear in the appendix.

1999 annual report on fisheries in the North west incorporating the annual summary of fishery statistics

This fisheries report summarises national and regional developments focussing on the North West region of the Environment Agency. The North West region covers around 14,000 square km, from Cheshire in the south to its northern border with Scotland. The report provides statistics on fisheries finance, including salmon and sea trout catches, including rod and line and net catches, and special projects, including fish stock assessments, radiotracking, and various surveys. The appendix includes a summary of fish statistics for 1999.

2000 annual report on fisheries in the North West

This fisheries report summarises developments of the year 2000 in the North West Region of the Environment Agency. The North West region covers around 14,000 square km, from Cheshire in the south to its northern border with Scotland. The report provides statistics on fisheries finance, including salmon and sea trout catches, including rod and line and net catches, and special projects, including fish stock assessments, radiotracking, and various surveys. The appendix includes a summary of fish statistics for 2000.

North West fisheries report 2002

This fisheries report summarises developments of the year 2002 in the North West Region of the Environment Agency. The North West region covers around 14,000 square km, from Cheshire in the south to its northern border with Scotland. Reports include migratory fish movements, rod catches, anti poaching, radiotracking,habitat surveys, and restocking. Statistics include rod catches, mortalities, fishery prosecutions, licencing, fish counters, and redd counts.

The calibration of a semi-quantitative approach to fish stock assessment in the North West Region of the NRA

(1) A total of 45 sites was sampled, each being fished using the semi-quantitative and quantitative techniques. (2) A significant relationship existed between the semi-quantitative and Quantitative results for all age groups of salmonids (R2 83.4% to 96.1%, p < 0.0001). (3) The results from each site were categorised according to an existing classification system for quantitative and semi-quantitative data. The semi-quantitative component of this system was modified using the results of this investigation. The degree of error associated with sites classified semi-quantitatively was found to be slightly less when using the modified system for 0+ salmon, > 0+ salmon and 0+ trout, ranging from 10.5% to 30%. (4) Insufficient data points were available for the analysis of coarse fish data.

NRA North west salmonid microtagging programme 1987-1994

The microtagging programme began in 1987 using hatchery reared salmon originating from the rivers Caldew and Hodder and subsequently included the Lune (1988) and Ribble (1989). Microtagging of sea trout began in 1991 for the Lune and in 1993 for the Hodder. The report explores the NRA North west salmonid microtagging programme looking at methods, results and recommendations. The report provides salmon microtagging data and returns from 1987 to 1994.

Variations in eastern North Pacific demersal fish biomass based on the U.S. west coast groundfish bottom trawl survey (2003–2010)

In response to declining biomass of Northeast Pacific groundfish in the late 1990s and to improve the scientific basis for management of the fishery, the Northwest Fisheries Science Center standardized and enhanced their annual bottom trawl survey in 2003. The survey was expanded to include the entire area along the U.S. west coast at depths of 55–1280 m. Coast-wide biomass and species richness significantly decreased during the first eight years (2003–10) of this fishery-independent survey. We observed an overall tendency toward declining biomass for 62 dominant taxa combined (fishery target and nontarget species) and four of seven subgroups (including cartilaginous fish, flatfishes, shelf rockfishes, and other shelf species), despite increasing or variable biomass trends in individual species. These decreases occurred during a period of reduced catch for groundfish along the shelf and upper slope regions relative to historical rates. We used information from multiple stock assessments to aggregate species into three groups: 1) with strong recruitment, 2) without strong recruitment in 1999, and 3) with unknown recruitment level. For each group, we evaluated whether declining biomass was primarily related to depletion (using year as a proxy) or environmental factors (i.e., variation in the Pacific Decadal Oscillation). According to Akaike’s information criterion, changes in aggregate biomass for species with strong recruitment were more closely related to year, whereas those with no strong recruitment were more closely related to climate. The significant decline in biomass for species without strong recruitment confirms that factors other than depletion of the exceptional 1999 year class may be responsible for the observed decrease in biomass along the U.S. west coast.

Otolith morphometrics and population structure of Pacific sardine (Sardinops sagax) along the west coast of North America

The broad distribution of Pacific sardine (Sardinops sagax) along the Pacif ic coast of North America makes it difficult for fisheries managers to identify regional stocks of this dominant small pelagic species. An investigation of morphometric characteristics of otoliths of Pacific sardine across most of their range revealed regional differences in populations. In a survey of over 2000 otoliths, all ages (with an emphasis on age-1 recruits) were compared. Principal components analysis, multivariate analysis of variance, and a novel method derived from regression and residuals calculations, termed perimeter-weight profiles (PWPs), revealed otolith similarities and differences. The results of the different approaches to statistical comparisons did not always agree. Sardine otoliths from Mexican waters were generally lighter and more lobate than those from U.S. and Canadian populations. Age-1 otoliths from northern California in 2006–07 tended to be heavier and smoother than those from other areas, including year-class cohorts from southern California. Comparisons of age-groups and year-classes of northern California otoliths with the use of the PWP models indicated signif icant trends in year-to-year patterns. In conjunction with other established indices of population structure, otolith PWPs are a useful tool for identifying local and regional stocks of Pacific sardine and may help distinguish populations of other fish species as well.

Novel Papillomaviruses in Free-Ranging Iberian Bats: No Virus-Host Co-evolution, No Strict Host Specificity, and Hints for Recombination

Papillomaviruses (PVs) are widespread pathogens. However, the extent of PV infections in bats remains largely unknown. This work represents the first comprehensive study of PVs in Iberian bats. We identified four novel PVs in the mucosa of free-ranging Eptesicus serotinus (EserPV1, EserPV2, and EserPV3) and Rhinolophus ferrumequinum (RferPV1) individuals and analyzed their phylogenetic relationships within the viral family. We further assessed their prevalence in different populations of E. serotinus and its close relative E. isabellinus. Although it is frequent to read that PVs co-evolve with their host, that PVs are highly species-specific, and that PVs do not usually recombine, our results suggest otherwise. First, strict virus-host co-evolution is rejected by the existence of five, distantly related bat PV lineages and by the lack of congruence between bats and bat PVs phylogenies. Second, the ability of EserPV2 and EserPV3 to infect two different bat species (E. serotinus and E. isabellinus) argues against strict host specificity. Finally, the description of a second noncoding region in the RferPV1 genome reinforces the view of an increased susceptibility to recombination in the E2-L2 genomic region. These findings prompt the question of whether the prevailing paradigms regarding PVs evolution should be reconsidered.

Review of the crevalle jacks, Caranx hippos complex (Teleostei: Carangidae), with a description of a new species from West Africa

The Caranx hippos species complex comprises three extant species: crevalle jack (Caranx hippos) (Linnaeus, 1766) from both the western and eastern Atlantic oceans; Pacific crevalle jack (Caranx caninus) Günther, 1868 from the eastern Pacific Ocean; and longfin crevalle jack (Caranx fischeri) new species, from the eastern Atlantic, including the Mediterranean Sea and Ascension Island. Adults of all three species are superficially similar with a black blotch on the lower half of the pectoral fin, a black spot on the upper margin of opercle, one or two pairs of enlarged symphyseal canines on the lower jaw, and a similar pattern of breast squamation. Each species has a different pattern of hyperostotic bone development and anal-fin color. The two sympatric eastern Atlantic species also differ from each other in number of dorsal-and anal-fin rays, and in large adults of C. fischeri the lobes of these fins are longer and the body is deeper. Caranx hippos from opposite sides of the Atlantic are virtually indistinguishable externally but differ consistently in the expression of hyperostosis of the first dorsalfin pterygiophore. The fossil species Caranx carangopsis Steindachner 1859 appears to have been based on composite material of Trachurus sp. and a fourth species of the Caranx hippos complex. Patterns of hyperostotic bone development are compared in the nine (of 15 total) species of Caranx sensu stricto that exhibit hyperostosis.

Biodiversity of estuarine fish faunas in West Africa

In West Africa (between Ivory Coast and Sénégal), estuarine environments vary from lagoons to high discharge rivers to inverse hypersaline estuaries. This results in a high diversity of estuarine fish species, with an important turnover and a core of ubiquitous species. The species richness of a given estuary depends on the combination of hydrological factors (marine or freshwater dominance) and biogeography (continental biogeographic regions). The catch rate is higher in lagoons and inverse estuaries than in normal estuaries, which can be explained by the predominance of small juveniles in the latter. Clupeids are the most abundant fishes all over the region, but different systems have different dominant species. Assessing the functioning of West-African estuaries provides useful comparisons to Asian estuarine systems.