Identification of vhhP2, a novel genetic marker of Vibrio harveyi, and its application in the quick detection of V. harveyi from animal specimens and environmental samples

Aims: To investigate the species-specific prevalence of vhhP2 among Vibrio harveyi isolates and the applicability of vhhP2 in the specific detection of V. harveyi from crude samples of animal and environmental origins. Methods and Results: A gene (vhhP2) encoding an outer membrane protein of unknown function was identified from a pathogenic V. harveyi isolate. vhhP2 is present in 24 V. harveyi strains isolated from different geographical locations but is absent in 24 strains representing 17 different non-V. harveyi species, including V. parahaemolyticus and V. alginolyticus. A simple polymerase chain reaction method for the identification of V. harveyi was developed based on the conserved sequence of vhhP2. This method was demonstrated to be applicable to the quick detection of V. harveyi from crude animal specimens and environmental samples. The specificity of this method was tested by applying it to the examination of two strains of V. campbellii, which is most closely related to V. harveyi. One of the V. campbellii strains was falsely identified as V. harveyi. Conclusions: vhhP2 is ubiquitously present in the V. harveyi species and is absent in most of the non-V. harveyi species; this feature enables vhhP2 to serve as a genetic marker for the rapid identification of V. harveyi. However, this method can not distinguish some V. campbellii strains from V. harveyi. Significance and Impact of the Study: the significance of our study is the identification of a novel gene of V. harveyi and the development of a simple method for the relatively accurate detection of V. harveyi from animal specimens and environmental samples.

Role of animal pole protuberance and microtubules during meiosis in sea cucumber Apostichopus japonicus oocytes

Fully grown oocytes of Apostichopus japonicus have a cytoplasmic protuberance where the oocyte attaches to the follicle. The protuberance and the oolamina located on the opposite side of the oocyte indicate the animal-vegetal axis. Two pre-meiotic centrosomes are anchored to the protuberance by microtubules between centrosomes and protuberance. After meiosis reinitiation induced by DTT solution, the germinal vesicle (GV) migrates towards the protuberance. The GV breaks down after it migrates to the oocyte membrane on the protuberance side. The protuberance then contracts back into the oocyte and the first polar body extrudes from the site of the former protuberance. The second polar body forms beneath the first. Thus the oocyte protuberance indicates the presumptive animal pole well before maturation of the oocyte.

H5N1 avian influenza re-emergence of Lake Communication Qinghai: phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation

Highly pathogenic avian influenza H5N1 virus has swept west across the globe and caused serious debates on the roles of migratory birds in virus circulation since the first large-scale outbreak in migratory birds of Lake Qinghai, 2005. In May 2006, another outbreak struck Lake Qinghai and six novel strains were isolated. To elucidate these QH06 viruses, the six isolates were subjected to whole-genome sequencing. Phylogenetic analyses show that QH06 viruses are derived from the lineages of Lake Qinghai, 2005. Five of the six novel isolates are adjacent to the strain A/Cygnus olor/Croatia/1/05, and the last one is related to the strain A/duck/Novosibirsk/ 02/05, an isolate of the flyway. Antigenic analyses suggest that QH06 and QH05 viruses are similar to each other. These findings implicate that QH06 viruses of Lake Qinghai may travel back via migratory birds, though not ruling out the possibility of local circulation of viruses of Lake Qinghai.

Extrativismo animal em zona de fronteira agrícola na Amazônia.

Os programas de colonização na Amazônia tem chamado atenção de cientistas, autoridades e ambientalistas para o impacto ambiental causado por desmatamentos e queimadas na faixa de fronteira agrícola. O extrativismo vegetal tem sido merecedor de grande atenção por parte destes grupos, mas pouca ênfase tem sido dada ao extrativismo animal. A forma como este é praticado pelas populações ribeirinhas, indígenas e de seringueiros já foi objeto de alguns estudos; porém, os conhecimentos disponíveis sobre extrativismo animal em projeto de colonização em área de fronteira agrícola são inexistentes. Se, o extrativismo animal é pouco conhecido é ainda menos estudado e monitorado quanto ao impacto que exerce sobre a composição e estrutura dos povoamentos e populações faunísticas. Este tópico merece uma avaliação criteriosa, pois a caça é uma atividade tradicional na vida das populações rurais brasileiras, destinando-se principalmente à subsistência das mesmas. Em áreas de fronteira agrícola, onde aproximadamente 70% dos colonos são originários de outros ecossistemas, pouco se sabe sobre o extrativismo animal por eles praticados. Este estudo investigou a utilização dos recursos cinegéticos amazônicos por estes colonos e o impacto que estas atividades causam na fauna amazônica. O município escolhido foi Machadinho d´Oeste, em Rondônia, implantado por um projeto de colonização elaborado pelo INCRA e financiado pelo BANCO MUNDIAL, e que, até 1980, possuía sua área toda florestada e intacta. Hoje, cerca de 20 anos após, tem uma interface agrícola e fauna silvestre , com inter-relações específicas, pouco conhecidas e avaliadas. O conhecimento dessas relações possibilita a adoção de medidas corretas para o monitoramento destas áreas que têm estendido suas fronteiras nos últimos anos.

Sistema de avaliação de impacto ambiental de inovações tecnológicas nos segmentos agropecuário, produção animal e agroindústria (SISTEMA AMBITEC).

2004

Multiple-User Quantum Optical Communication

A fundamental understanding of the information carrying capacity of optical channels requires the signal and physical channel to be modeled quantum mechanically. This thesis considers the problems of distributing multi-party quantum entanglement to distant users in a quantum communication system and determining the ability of quantum optical channels to reliably transmit information. A recent proposal for a quantum communication architecture that realizes long-distance, high-fidelity qubit teleportation is reviewed. Previous work on this communication architecture is extended in two primary ways. First, models are developed for assessing the effects of amplitude, phase, and frequency errors in the entanglement source of polarization-entangled photons, as well as fiber loss and imperfect polarization restoration, on the throughput and fidelity of the system. Second, an error model is derived for an extension of this communication architecture that allows for the production and storage of three-party entangled Greenberger-Horne-Zeilinger states. A performance analysis of the quantum communication architecture in qubit teleportation and quantum secret sharing communication protocols is presented. Recent work on determining the channel capacity of optical channels is extended in several ways. Classical capacity is derived for a class of Gaussian Bosonic channels representing the quantum version of classical colored Gaussian-noise channels. The proof is strongly mo- tivated by the standard technique of whitening Gaussian noise used in classical information theory. Minimum output entropy problems related to these channel capacity derivations are also studied. These single-user Bosonic capacity results are extended to a multi-user scenario by deriving capacity regions for single-mode and wideband coherent-state multiple access channels. An even larger capacity region is obtained when the transmitters use non- classical Gaussian states, and an outer bound on the ultimate capacity region is presented

Leveraging Learning and Language Via Communication Bootstrapping

In a Communication Bootstrapping system, peer components with different perceptual worlds invent symbols and syntax based on correlations between their percepts. I propose that Communication Bootstrapping can also be used to acquire functional definitions of words and causal reasoning knowledge. I illustrate this point with several examples, then sketch the architecture of a system in progress which attempts to execute this task.

Avaliação de impactos ambientais com a utilização do método ?AMBITEC - Produção Animal? - Projeto RADEMA: recuperação de áreas degradadas com pastagens.

2006

Sparsely Faceted Arrays: A Mechanism Supporting Parallel Allocation, Communication, and Garbage Collection

Conventional parallel computer architectures do not provide support for non-uniformly distributed objects. In this thesis, I introduce sparsely faceted arrays (SFAs), a new low-level mechanism for naming regions of memory, or facets, on different processors in a distributed, shared memory parallel processing system. Sparsely faceted arrays address the disconnect between the global distributed arrays provided by conventional architectures (e.g. the Cray T3 series), and the requirements of high-level parallel programming methods that wish to use objects that are distributed over only a subset of processing elements. A sparsely faceted array names a virtual globally-distributed array, but actual facets are lazily allocated. By providing simple semantics and making efficient use of memory, SFAs enable efficient implementation of a variety of non-uniformly distributed data structures and related algorithms. I present example applications which use SFAs, and describe and evaluate simple hardware mechanisms for implementing SFAs. Keeping track of which nodes have allocated facets for a particular SFA is an important task that suggests the need for automatic memory management, including garbage collection. To address this need, I first argue that conventional tracing techniques such as mark/sweep and copying GC are inherently unscalable in parallel systems. I then present a parallel memory-management strategy, based on reference-counting, that is capable of garbage collecting sparsely faceted arrays. I also discuss opportunities for hardware support of this garbage collection strategy. I have implemented a high-level hardware/OS simulator featuring hardware support for sparsely faceted arrays and automatic garbage collection. I describe the simulator and outline a few of the numerous details associated with a "real" implementation of SFAs and SFA-aware garbage collection. Simulation results are used throughout this thesis in the evaluation of hardware support mechanisms.

Semeadora de tração animal de duas linhas de semeadura para plantio direto em pequenas propriedades rurais.

2006

Pesquisa na produção animal: garantia de qualidade de vida.

2004

Teores de minerais no complexo solo-planta-animal de áreas de terras firmes do Amazonas.

A suposição de que prováveis deficiências de elementos minerais nas pastagens de terra firme do Estado do Amazonas estivessem relacionadas com o denominado "mal de secar", doença que ocorre em bovinos, oportunizou a realização do presente trabalho.

Parte aérea da mandioca na alimentação animal. II. O farelo da parte aérea na silagem do capim-elefante.

A inviabilidade economica da ensilagem de milho na regiao dos cerrados, devido aos custos muito elevados de insumos necessarios para a sua producao, leva os pecuaristas a ensilar outras forragens. Durante as forragens mais empregadas para ensilagem na regiao, destaca-se o capim-elefante (Pennisetum pupureum Shum) por ser uma graminea de porte grande, de boa producao de massa verde por hectare e bem difundida no meio rural.

Parte aérea da mandioca na alimentação animal. II. O farelo da parte aérea na silagem do capim-elefante.

1984