The role of spatial and temporal descriptors for neotropical tadpole communities in southern Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Variação sazonal de alguns parâmetros físicos e químicos em três rios pertencentes a uma bacia de drenagem na região centro-sul do Estado do Paraná, Sul do Brasil

Three small rivers belonging to the Rio das Pedras basin, located in the mid-southern region of Paraná state, were studied in order to evaluate the seasonal variation pattern of some physical and chemical parameters. Monthly samplings were carried out from April 2004 to March 2005. The following limnological parameters were measured: water temperature, specific conductance, oxygen saturation, pH, turbidity, current velocity and depth. The waters of the Rio das Pedras basin presented very peculiar characteristics, showing typical seasonal patterns for some of the studied limnological variables. An Analysis of Variance (Anova) showed significant differences only for pH and depth among streams. A Principal Component Analysis (PCA) showed a weak tendency to form groups based on seasons instead of sampling sites. The results, in general, indicate that temporal variations of the environmental parameters analyzed were not sufficient to draw a clear seasonal pattern in the Rio das Pedras basin. Most likely, the lack of an obvious seasonal pattern has been provoked by a particular regional precipitation regime, where rains are frequent and well-distributed throughout the year.

Padrões fenológicos de espécies arbóreas em um fragmento de floresta semidecídua no estado de São Paulo: definição de padrões sazonais e comparação entre anos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Morfologia e distribuição dos estágios larvais de representantes das famílias Diogenidae e Paguridae (Crustacea: Decapoda: Anomura) obtidas no nêuston da região de Ubatuba, SP

Pós-graduação em Ciências Biológicas (Zoologia) - IBB

Riqueza, abundância e sazonalidade de comunidades de macroalgas em diferentes escalas espaciais em riachos da região centr-sul do estado do Paraná

Conselho Nacional de Desenvolvimento Cientifico e Tecnológico (CNPq)

Modelagem matemática para a dispersão de fungos fitopatogênicos via autômatos celulares

Brazil is a major world producer and exporter of agricultural products like soybeans, sugar, coffee, orange and tobacoo. However, the action of phytopathogenic fungi has been one of the largest challenges encountered in the field as they are responsible for approximately 25 to 50 per cent of losses in crops of fruits and vegetables. The presence of these pathogens is always a problem, because the damage on the tissues and organs promote lesions which decreses growth vegetation and often leads the individual (host) to death. Therefore, it is crucial to understand the process of spreading of these pathogens in the field to develop strategies which prevent the epidemics caused by them. In this study, the dispersal of fungi phytopathogenic in the field was modeled using the automata cellular formalism. The growth rate of infected plants population was measured by the radius of gyration and the influence of host different susceptibility degrees into the disease spread was assessed. The spatial anisotropy related to the plant-to-plant space and the system’s response to distinct seasonal patterns were also evaluated. The results obtained by a mean field model (spatially implicit models) emphasized the importance of the spatial structure on the spreading process, and dispersal patterns obtained by simulation (using a cellular automata) were in agreement with thse observed in data. All computational implementation was held in language Cl

Towards biological control strategies for the bronze bug, Thaumastocoris peregrinus, on eucalyptus plantations in South America

The bronze bug is an invasive Australian pest that has reached eucalypt production areas worldwide in <10 years. The fi rst record in South America was in 2005 in Argentina. Collaboration in the region towards a unifi ed strategy for the management of the bronze bug started soon after the dispersal of the pest into Brazil and Uruguay was confi rmed. Here, we present the main achievements of this collaboration in four main topics: 1) biology of the pest, 2) monitoring, 3) biological control, and 4) cooperative networks. Two mass rearing procedures have been implemented in the region with relative success, allowing basic biological studies on the pest. Continuous monitoring in the region for >5 years has provided a reasonable knowledge on seasonal patterns of T. peregrinus. Biological control strategies developed include the use of local natural enemies of T. peregrinus, the development of biopesticides, and the introduction of Cleruchoides noackae, an egg parasitoid of T. peregrinus from Australia. We review the main achievements in each country. Finally, a regional network of institutions, researchers, and students has strengthened in the region, providing a solid background for future collaboration.

What drives the seasonality of photosynthesis across the Amazon basin? A cross-site analysis of eddy flux tower measurements from the Brasil flux network

We investigated the seasonal patterns of Amazonian forest photosynthetic activity, and the effects thereon of variations in climate and land-use, by integrating data from a network of ground-based eddy flux towers in Brazil established as part of the ‘Large-Scale Biosphere Atmosphere Experiment in Amazonia’ project. We found that degree of water limitation, as indicated by the seasonality of the ratio of sensible to latent heat flux (Bowen ratio) predicts seasonal patterns of photosynthesis. In equatorial Amazonian forests (5◦ N–5◦ S), water limitation is absent, and photosynthetic fluxes (or gross ecosystem productivity, GEP) exhibit high or increasing levels of photosynthetic activity as the dry season progresses, likely a consequence of allocation to growth of new leaves. In contrast, forests along the southern flank of the Amazon, pastures converted from forest, and mixed forest-grass savanna, exhibit dry-season declines in GEP, consistent with increasing degrees of water limitation. Although previous work showed tropical ecosystem evapotranspiration (ET) is driven by incoming radiation, GEP observations reported here surprisingly show no or negative relationships with photosynthetically active radiation (PAR). Instead, GEP fluxes largely followed the phenology of canopy photosynthetic capacity (Pc), with only deviations from this primary pattern driven by variations in PAR. Estimates of leaf flush at three

Studio dei metodi di valutazione della pericolosità associata ai "debris flow" in ambiente alpino

The present work concerns with the study of debris flows and, in particular, with the related hazard in the Alpine Environment. During the last years several methodologies have been developed to evaluate hazard associated to such a complex phenomenon, whose velocity, impacting force and inappropriate temporal prediction are responsible of the related high hazard level. This research focuses its attention on the depositional phase of debris flows through the application of a numerical model (DFlowz), and on hazard evaluation related to watersheds morphometric, morphological and geological characterization. The main aims are to test the validity of DFlowz simulations and assess sources of errors in order to understand how the empirical uncertainties influence the predictions; on the other side the research concerns with the possibility of performing hazard analysis starting from the identification of susceptible debris flow catchments and definition of their activity level. 25 well documented debris flow events have been back analyzed with the model DFlowz (Berti and Simoni, 2007): derived form the implementation of the empirical relations between event volume and planimetric and cross section inundated areas, the code allows to delineate areas affected by an event by taking into account information about volume, preferential flow path and digital elevation model (DEM) of fan area. The analysis uses an objective methodology for evaluating the accuracy of the prediction and involve the calibration of the model based on factors describing the uncertainty associated to the semi empirical relationships. The general assumptions on which the model is based have been verified although the predictive capabilities are influenced by the uncertainties of the empirical scaling relationships, which have to be necessarily taken into account and depend mostly on errors concerning deposited volume estimation. In addition, in order to test prediction capabilities of physical-based models, some events have been simulated through the use of RAMMS (RApid Mass MovementS). The model, which has been developed by the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) in Birmensdorf and the Swiss Federal Institute for Snow and Avalanche Research (SLF) takes into account a one-phase approach based on Voellmy rheology (Voellmy, 1955; Salm et al., 1990). The input file combines the total volume of the debris flow located in a release area with a mean depth. The model predicts the affected area, the maximum depth and the flow velocity in each cell of the input DTM. Relatively to hazard analysis related to watersheds characterization, the database collected by the Alto Adige Province represents an opportunity to examine debris-flow sediment dynamics at the regional scale and analyze lithologic controls. With the aim of advancing current understandings about debris flow, this study focuses on 82 events in order to characterize the topographic conditions associated with their initiation , transportation and deposition, seasonal patterns of occurrence and examine the role played by bedrock geology on sediment transfer.

Entwicklung von chiralen- sowie RP-HPLC-Methoden in Verbindung mit hochauflösender MS und deren Anwendung zur Analyse sekundärer organischer Aerosole in der Atmosphäre

Die Erdatmosphäre besteht hauptsächlich aus Stickstoff (78%), Sauerstoff (21%) und Edelga¬sen. Obwohl Partikel weniger als 0,1% ausmachen, spielen sie eine entscheidende Rolle in der Chemie und Physik der Atmosphäre, da sie das Klima der Erde sowohl direkt als auch indirekt beeinflussen. Je nach Art der Bildung unterscheidet man zwischen primären und sekundären Partikeln, wobei primäre Partikel direkt in die Atmosphäre eingetragen werden. Sekundäre Partikel hingegen entstehen durch Kondensation von schwerflüchtigen Verbindungen aus der Gasphase, welche durch Reaktionen von gasförmigen Vorläufersubstanzen (volatile organic compounds, VOCs) mit atmosphärischen Oxidantien wie Ozon oder OH-Radikalen gebildet werden. Da die meisten Vorläufersubstanzen organischer Natur sind, wird das daraus gebil¬dete Aerosol als sekundäres organisches Aerosol (SOA) bezeichnet. Anders als die meisten primären Partikel stammen die VOCs überwiegend aus biogenen Quellen. Es handelt sich da¬bei um ungesättigte Kohlenwasserstoffe, die bei intensiver Sonneneinstrahlung und hohen Temperaturen von Pflanzen emittiert werden. Viele der leichtflüchtigen Vorläufersubstanzen sind chiral, sowohl die Vorläufer als auch die daraus gebildeten Partikel werden aber in den meisten Studien als eine Verbindung betrachtet und gemeinsam analysiert. Die mit Modellen berechneten SOA-Konzentrationen, welche auf dieser traditionellen Vorstellung der SOA-Bil¬dung beruhen, liegen deutlich unterhalb der in der Atmosphäre gefundenen, so dass neben diesem Bildungsweg auch noch andere SOA-Bildungsarten existieren müssen. Aus diesem Grund wird der Fokus der heutigen Forschung vermehrt auf die heterogene Chemie in der Partikelphase gerichtet. Glyoxal als Modellsubstanz kommt hierbei eine wichtige Rolle zu. Es handelt sich bei dieser Verbindung um ein Molekül mit einem hohen Dampfdruck, das auf Grund dieser Eigenschaft nur in der Gasphase zu finden sein sollte. Da es aber über zwei Alde¬hydgruppen verfügt, ist es sehr gut wasserlöslich und kann dadurch in die Partikelphase über¬gehen, wo es heterogenen chemischen Prozessen unterliegt. Unter anderem werden in An¬wesenheit von Ammoniumionen Imidazole gebildet, welche wegen der beiden Stickstoff-He¬teroatome lichtabsorbierende Eigenschaften besitzen. Die Verteilung von Glyoxal zwischen der Gas- und der Partikelphase wird durch das Henrysche Gesetz beschrieben, wobei die Gleichgewichtskonstante die sogenannte Henry-Konstante ist. Diese ist abhängig von der un¬tersuchten organischen Verbindung und den im Partikel vorhandenen anorganischen Salzen. Für die Untersuchung chiraler Verbindungen im SOA wurde zunächst eine Filterextraktions¬methode entwickelt und die erhaltenen Proben anschließend mittels chiraler Hochleistungs-Flüssigchromatographie, welche an ein Elektrospray-Massenspektrometer gekoppelt war, analysiert. Der Fokus lag hierbei auf dem am häufigsten emittierten Monoterpen α-Pinen und seinem Hauptprodukt, der Pinsäure. Da bei der Ozonolyse des α-Pinens das cyclische Grund¬gerüst erhalten bleibt, können trotz der beiden im Molekül vorhanden chiralen Zentren nur zwei Pinsäure Enantiomere gebildet werden. Als Extraktionsmittel wurde eine Mischung aus Methanol/Wasser 9/1 gewählt, mit welcher Extraktionseffizienzen von 65% für Pinsäure Enan¬tiomer 1 und 68% für Pinsäure Enantiomer 2 erreicht werden konnten. Des Weiteren wurden Experimente in einer Atmosphärensimulationskammer durchgeführt, um die Produkte der α-Pinen Ozonolyse eindeutig zu charakterisieren. Enantiomer 1 wurde demnach aus (+)-α-Pinen gebildet und Enantiomer 2 entstand aus (-)-α-Pinen. Auf Filterproben aus dem brasilianischen Regenwald konnte ausschließlich Pinsäure Enantiomer 2 gefunden werden. Enantiomer 1 lag dauerhaft unterhalb der Nachweisgrenze von 18,27 ng/mL. Im borealen Nadelwald war das Verhältnis umgekehrt und Pinsäure Enantiomer 1 überwog vor Pinsäure Enantiomer 2. Das Verhältnis betrug 56% Enantiomer 1 zu 44% Enantiomer 2. Saisonale Verläufe im tropischen Regenwald zeigten, dass die Konzentrationen zur Trockenzeit im August höher waren als wäh¬rend der Regenzeit im Februar. Auch im borealen Nadelwald wurden im Sommer höhere Kon¬zentrationen gemessen als im Winter. Die Verhältnisse der Enantiomere änderten sich nicht im jahreszeitlichen Verlauf. Die Bestimmung der Henry-Konstanten von Glyoxal bei verschiedenen Saataerosolen, nämlich Ammoniumsulfat, Natriumnitrat, Kaliumsulfat, Natriumchlorid und Ammoniumnitrat sowie die irreversible Produktbildung aus Glyoxal in Anwesenheit von Ammoniak waren Forschungs¬gegenstand einer Atmosphärensimulationskammer-Kampagne am Paul-Scherrer-Institut in Villigen, Schweiz. Hierzu wurde zunächst das zu untersuchende Saataerosol in der Kammer vorgelegt und dann aus photochemisch erzeugten OH-Radikalen und Acetylen Glyoxal er¬zeugt. Für die Bestimmung der Glyoxalkonzentration im Kammeraerosol wurde zunächst eine beste¬hende Filterextraktionsmethode modifiziert und die Analyse mittels hochauflösender Mas¬senspektrometrie realisiert. Als Extraktionsmittel kam 100% Acetonitril, ACN zum Einsatz wo¬bei die Extraktionseffizienz bei 85% lag. Für die anschließende Derivatisierung wurde 2,4-Di¬nitrophenylhydrazin, DNPH verwendet. Dieses musste zuvor drei Mal mittels Festphasenex¬traktion gereinigt werden um störende Blindwerte ausreichend zu minimieren. Die gefunde¬nen Henry-Konstanten für Ammoniumsulfat als Saataerosol stimmten gut mit in der Literatur gefundenen Werten überein. Die Werte für Natriumnitrat und Natriumchlorid als Saataerosol waren kleiner als die von Ammoniumsulfat aber größer als der Wert von reinem Wasser. Für Ammoniumnitrat und Kaliumsulfat konnten keine Konstanten berechnet werden. Alle drei Saataerosole führten zu einem „Salting-in“. Das bedeutet, dass bei Erhöhung der Salzmolalität auch die Glyoxalkonzentration im Partikel stieg. Diese Beobachtungen sind auch in der Litera¬tur beschrieben, wobei die Ergebnisse dort nicht auf der Durchführung von Kammerexperi¬menten beruhen, sondern mittels bulk-Experimenten generiert wurden. Für die Trennung der Imidazole wurde eine neue Filterextraktionsmethode entwickelt, wobei sich ein Gemisch aus mit HCl angesäuertem ACN/H2O im Verhältnis 9/1 als optimales Extrak¬tionsmittel herausstellte. Drei verschiedenen Imidazole konnten mit dieser Methode quanti¬fiziert werden, nämlich 1-H-Imidazol-4-carbaldehyd (IC), Imidazol (IM) und 2,2‘-Biimidazol (BI). Die Effizienzen lagen für BI bei 95%, für IC bei 58% und für IM bei 75%. Kammerexperimente unter Zugabe von Ammoniak zeigten höhere Imidazolkonzentrationen als solche ohne. Wurden die Experimente ohne Ammoniak in Anwesenheit von Ammoni¬umsulfat durchgeführt, wurden höhere Imidazol-Konzentrationen gefunden als ohne Ammo¬niumionen. Auch die relative Luftfeuchtigkeit spielte eine wichtige Rolle, da sowohl eine zu hohe als auch eine zu niedrige relative Luftfeuchtigkeit zu einer verminderten Imidazolbildung führte. Durch mit 13C-markiertem Kohlenstoff durchgeführte Experimente konnte eindeutig gezeigt werden, dass es sich bei den gebildeten Imidazolen und Glyoxalprodukte handelte. Außerdem konnte der in der Literatur beschriebene Bildungsmechanismus erfolgreich weiter¬entwickelt werden. Während der CYPHEX Kampagne in Zypern konnten erstmalig Imidazole in Feldproben nach¬gewiesen werden. Das Hauptprodukt IC zeigte einen tageszeitlichen Verlauf mit höheren Kon¬zentrationen während der Nacht und korrelierte signifikant aber schwach mit der Acidität und Ammoniumionenkonzentration des gefundenen Aerosols.

Seasonality as a core business of phenology

The best characteristics of phenological observations are their description of seasons and seasonal patterns. Specific phenological phases are used to define the beginning and the end of seasons that form phenological calendars. Phenological observations more closely capture the integrated seasonal rhythm than statistically derived means or thresholds from climate elements. They only provide approximate indicators of seasonal changes and cannot replace visible or directly measurable phenomena. Including abiotic observations such as the timing of frost, thawing, icing, snow and fog even provides seasonality descriptions beyond the vegetation period. The length and position of seasons within the year is a foundation for an integrated description of seasonality presented as a phenological season diagram. Phenological observations are the indispensable basis for an integral description of a seasonal classification and seasonality. A well designed phenological diagram could offer a comprehensive picture of the rhythm and amplitude of seasons.

Twelve years' detection of respiratory viruses by immunofluorescence in hospitalised children: impact of the introduction of a new respiratory picornavirus assay

Background Direct immunofluorescence assays (DFA) are a rapid and inexpensive method for the detection of respiratory viruses and may therefore be used for surveillance. Few epidemiological studies have been published based solely on DFA and none included respiratory picornaviruses and human metapneumovirus (hMPV). We wished to evaluate the use of DFA for epidemiological studies with a long-term observation of respiratory viruses that includes both respiratory picornaviruses and hMPV. Methods Since 1998 all children hospitalized with respiratory illness at the University Hospital Bern have been screened with DFA for common respiratory viruses including adenovirus, respiratory syncytial virus (RSV), influenza A and B, and parainfluenza virus 1-3. In 2006 assays for respiratory picornaviruses and hMPV were added. Here we describe the epidemiological pattern for these respiratory viruses detected by DFA in 10'629 nasopharyngeal aspirates collected from 8'285 patients during a 12-year period (1998-2010). Results Addition of assays for respiratory picornaviruses and hMPV raised the proportion of positive DFA results from 35% to 58% (p < 0.0001). Respiratory picornaviruses were the most common viruses detected among patients ≥1 year old. The seasonal patterns and age distribution for the studied viruses agreed well with those reported in the literature. In 2010, an hMPV epidemic of unexpected size was observed. Conclusions DFA is a valid, rapid, flexible and inexpensive method. The addition of assays for respiratory picornaviruses and hMPV broadens its range of viral detection. DFA is, even in the "PCR era", a particularly adapted method for the long term surveillance of respiratory viruses in a pediatric population.

Steroid hormone related male biased parasitism in chamois, Rupicapra rupicapra rupicapra

Parasites are linked with their host in a trophic interaction with implications for both hosts and parasites. Interaction stretches from the host's immune response to the structuring of communities and the evolution of biodiversity. As in many species sex determines life history strategy, response to parasites may be sex-specific. Males of vertebrate species tend to exhibit higher rates of parasites than females. Sex-associated hormones may influence immunocompetence and are hypothesised to lead to this bias. In a field study, we tested the prediction of male biased parasitism (MBP) in free ranging chamois (Rupicapra rupicapra rupicapra), which are infested intensely by gastrointestinal and lung helminths. We further investigated sex differences in faecal androgen (testosterone and epiandrosterone), cortisol and oestrogen metabolites using enzyme immunoassays (EIA) to evaluate the impact of these hormones on sex dependent parasite susceptibility. Non-invasive methods were used and the study was conducted throughout a year to detect seasonal patterns. Hormone levels and parasite counts varied significantly throughout the year. Male chamois had a higher output of gastrointestinal eggs and lungworm larvae when compared to females. The hypothesis of MBP originating in sex related hormone levels was confirmed for the elevated output of lungworm larvae, but not for the gastrointestinal nematodes. The faecal output of lungworm larvae was significantly correlated with androgen and cortisol metabolite levels. Our study shows that sex differences in steroid levels play an important role to explain MBP, although they alone cannot fully explain the phenomenon.

Temporal and spatial variation of nitrogen transformations in nitrogen-saturated soils of a central Appalachian hardwood forest

We studied temporal and spatial patterns of soil nitrogen (N) dynamics from 1993 to 1995 in three watersheds of Fernow Experimental Forest, W.V.: WS7 (24-year-old, untreated); WS4 (mature, untreated); and WS3 (24-year-old, treated with (NH4)2SO since 1989 at the rate of 35 kg Nha–1year–1). Net nitrification was 141, 114, and115 kg Nha–1year–1, for WS3, WS4, and WS7, respectively, essentially 100% of net N mineralization for all watersheds. Temporal (seasonal) patterns of nitrification were significantly related to soil moisture and ambient temperaturein untreated watersheds only. Spatial patterns of soil water NO3–of WS4 suggest that microenvironmental variabilitylimits rates of N processing in some areas of this N-saturated watershed, in part by ericaceous species in the herbaceous layer. Spatial patterns of soil water NO3–in treated WS3 suggest that later stages of N saturation may result inhigher concentrations with less spatial variability. Spatial variability in soil N variables was lower in treated WS3 versus untreated watersheds. Nitrogen additions have altered the response of N-processing microbes to environmental factors, becoming less sensitive to seasonal changes in soil moisture and temperature. Biotic processes responsible forregulating N dynamics may be compromised in N-saturated forest ecosystems.

Effects of Atmospheric Nitrogen Deposition on the Herbaceous Layer of a Central Appalachian Hardwood Forest

Additions of nitrogen (N) have been shown to alter species diversity of plant communities, with most experimental studies having been carried out in communities dominated by herbaceous species. We examined seasonal and inter-annual patterns of change in the herbaceous layer of two watersheds of a central Appalachian hardwood forest that differed in experimental treatment. This study was carried out at the Fernow Experimental Forest, West Virginia, using two adjacent watersheds: WS4 (mature, second-growth hardwood stand, untreated reference), and WS3. Seven circular 0.04-ha sample plots were established in eachwatershed to represent its full range of elevation and slope aspect. The herbaceous layer was sampled by identifying and visually estimating cover (%) of all vascular plants. Sampling was carried out in mid-July of 1991 and repeated at approximately the same time in 1992. In 1994, these same plots were sampled each month fromMay to October. Seasonal patterns of herb layer dynamics were assessed for the complete 1994 data set, whereasinter-annual variability was based on plot data from 1991, 1992, and the July sample of 1994. There were nosignificant differences between watersheds for any sample year for any of the other herb layer characteristics measured, including herb layer cover, species richness, evenness, and diversity. Cover on WS4 decreased significantly from 1991 to 1992, followed by no change to 1994. By contrast, herb layer cover did not varysignificantly across years on WS3. Cover of the herbaceous layer of both watersheds increased from early in the growing season to the middle of the growing season, decreasing thereafter, with no significant differencesbetween WS3 and WS4 for any of the monthly cover means in 1994. Similar seasonal patterns found for herblayer cover—and lack of significant differences between watersheds—were also evident for species diversityand richness. By contrast, there was little seasonal change in herb layer species evenness, which was nearlyidentical between watersheds for all months except October. Seasonal patterns for individual species/speciesgroups were closely similar between watersheds, especially for Viola rotundifolia and Viola spp. Species richnessand species diversity were linearly related to herb layer cover for both WS3 and WS4, suggesting that spatialand temporal increases in cover were more related to recruitment of herb layer species than to growth of existingspecies. Results of this study indicate that there have been negligible responses of the herb layer to 6 yr of additions to WS3.