257 resultados para pectin lyases


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A simple mathematical model is presented to describe the cell separation process that plants undertake in order to deliberately shed organs. The focus here is on modelling the production of the enzyme polygalacturonase, which breaks down pectin that provides natural cell-to-cell adhesion in the localised abscission zone. A coupled system of three ordinary differential equations is given for a single cell, and then extended to hold for a layer of cells in the abscission zone. Simple observations are made based on the results of this preliminary model and, furthermore, a number of opportunities for applied mathematicians to make contributions in this subject area are discussed.

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Aspergillus terreus is successfully used for industrial production of itaconic acid. The acid is formed from cis-aconitate, an intermediate of the tricarboxylic (TCA) cycle, by catalytic action of cis-aconitate decarboxylase. It could be assumed that strong anaplerotic reactions that replenish the pool of the TCA cycle intermediates would enhance the synthesis and excretion rate of itaconic acid. In the phylogenetic close relative Aspergillus niger, upregulated metabolic flux through glycolysis has been described that acted as a strong anaplerotic reaction. Deregulated glycolytic flux was caused by posttranslational modification of 6-phosphofructo-1-kinase (PFK1) that resulted in formation of a highly active, citrate inhibition-resistant shorter form of the enzyme. In order to avoid complex posttranslational modification, the native A. niger pfkA gene has been modified to encode for an active shorter PFK1 fragment. By the insertion of the modified A. niger pfkA genes into the A. terreus strain, increased specific productivities of itaconic acid and final yields were documented by transformants in respect to the parental strain. On the other hand, growth rate of all transformants remained suppressed which is due to the low initial pH value of the medium, one of the prerequisites for the accumulation of itaconic acid by A. terreus mycelium. © 2010 Springer-Verlag.

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Quality of fresh-cut carambola (Averrhoa carambola L) is related to many chemical and biochemical variables especially those involved with softening and browning, both influenced by storage temperature. To study these effects, a multivariate analysis was used to evaluate slices packaged in vacuum-sealed polyolefin bags, and stored at 2.5 degrees C, 5 degrees C and 10 degrees C, for up to 16 d. The quality of slices at each temperature was correlated with the duration of storage, O(2) and CO(2) concentration in the package, physical chemical constituents, and activity of enzymes involved in softening (PG) and browning (PPO) metabolism. Three quality groups were identified by hierarchical cluster analysis, and the classification of the components within each of these groups was obtained from a principal component analysis (PCA). The characterization of samples by PCA clearly distinguished acceptable and non-acceptable slices. According to PCA, acceptable slices presented higher ascorbic acid content, greater hue angles ((o)h) and final lightness (L-5) in the first principal component (PC1). On the other hand, non-acceptable slices presented higher total pectin content. PPO activity in the PC1. Non-acceptable slices also presented higher soluble pectin content, increased pectin solubilisation and higher CO(2) concentration in the second principal component (PC2) whereas acceptable slices showed lower total sugar content. The hierarchical cluster and PCA analyses were useful for discriminating the quality of slices stored at different temperatures.

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Anthocyanins are located within the vacuole of plant cells, and are released following cell rupture during eating or processing at which time they first come into contact with the plant cell wall. The extent of anthocyanin-cell wall interaction was investigated by monitoring the rate of anthocyanin depletion in the presence of pure cellulose or cellulose-pectin composites as cell wall models. It was found that anthocyanins interact with both cellulose and pectin over a two-stage process with initially (mins-hours) 13 similar to 18% of anthocyanins binding to cellulose or cellulose/pectincomposites. With prolonged exposure (days-weeks), a gradual increase in anthocyanin binding occurs, possibly due to anthocyanins stacking on top of a base layer. Binding of acylated and non-acylated anthocyanins followed a similar pattern with slightly more (5-10%) binding of the acylated forms. Composites with the highest pectin content had the greatest anthocyanin binding suggesting the existence of both ionic interactions (with pectin) and hydrophobic interactions (with cellulose) of anthocyanin with plant cell walls.

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Separately, polyphenols and plant cell walls (PCW) are important contributors to the health benefits associated with fruits and vegetables. However, interactions with PCW which occur either during food preparation or mastication may affect bioaccessibility and hence bioavailability of polyphenols. Binding interactions between anthocyanins, phenolic acids (PAs) and PCW components, were evaluated using both a bacterial cellulose-pectin model system and a black carrot puree system. The majority of available polyphenols bound to PCW material with 60-70% of available anthocyanins and PAs respectively binding to black carrot puree PCW matter. Once bound, release of polyphenols using acidified methanol is low with only similar to 20% of total anthocyanins to similar to 30% of PAs being released. Less than 2% of bound polyphenol was released after in vitro gastric and small intestinal (S.I.) digestion for both the model system and the black carrot puree PCW matter. Confocal laser scanning microscopy shows localised binding of anthocyanins to PCW. Very similar patterns of binding for anthocyanins and PAs suggest that PAs form complexes with anthocyanins and polysaccharides. Time dependent changes in extractability with acidified methanol but not the total bound fraction suggests that initial nonspecific deposition on cellulose surfaces is followed by rearrangement of the bound molecules. Minimal release of anthocyanins and PAs after simulated gastric and S.I. digestion indicates that polyphenols in fruits and vegetables which bind to the PCW will be transported to the colon where they would be expected to be released by the action of cell wall degrading bacteria.

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Bacterial cellulose and cellulose-pectin composites were used as well-defined model plant cell wall (PCW) systems to study the interaction between phenolic acids (PA) derived from purple carrot juice concentrate (PCJC) and PCW components. Significant PA depletion from solution occurred, with pure cellulose initially (30 s-1 h) absorbing more than cellulose-pectin composites in the first hour (ca 20% cf 10-15%), but with all composites absorbing similar levels (ca 30%) after several days. Individual PAs bound to different relative extents with caffeic acid > chlorogenic acid > ferulic acid. Extrapolation of data for these model systems to carrot puree suggests that nutritionally-significant amounts of PAs could bind to cell walls, potentially restricting bioavailability in the small intestine and, as a consequence, delivering PAs to the large intestine for fermentation and metabolism by gut bacteria. (C) 2012 Elsevier Ltd. All rights reserved.

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Environmental factors contribute to over 70% of crop yield losses worldwide. Of these drought and salinity are the most significant causes of crop yield reduction. Rice is an important staple crop that feeds more than half of the world’s population. However among the agronomically important cereals rice is the most sensitive to salinity. In the present study we show that exogenous expression of anti-apoptotic genes from diverse origins, AtBAG4 (Arabidopsis), Hsp70 (Citrus tristeza virus) and p35 (Baculovirus), significantly improves salinity tolerance in rice at the whole plant level. Physiological, biochemical and agronomical analyses of transgenic rice expressing each of the anti-apoptotic genes subjected to salinity treatment demonstrated traits associated with tolerant varieties including, improved photosynthesis, membrane integrity, ion and ROS maintenance systems, growth rate, and yield components. Moreover, FTIR analysis showed that the chemical composition of salinity-treated transgenic plants is reminiscent of non-treated, unstressed controls. In contrast, wild type and vector control plants displayed hallmark features of stress, including pectin degradation upon subjection to salinity treatment. Interestingly, despite their diverse origins, transgenic plants expressing the anti-apoptotic genes assessed in this study displayed similar physiological and biochemical characteristics during salinity treatment thus providing further evidence that cell death pathways are conserved across broad evolutionary kingdoms. Our results reveal that anti-apoptotic genes facilitate maintenance of metabolic activity at the whole plant level to create favorable conditions for cellular survival. It is these conditions that are crucial and conducive to the plants ability to tolerate/adapt to extreme environments.

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Pectin is a natural polymer consisting mainly of D-galacturonic acid monomers. Microorganisms living on decaying plant material can use D-galacturonic acid for growth. Although bacterial pathways for D-galacturonate catabolism had been described previously, no eukaryotic pathway for D-galacturonate catabolism was known at the beginning of this work. The aim of this work was to identify such a pathway. In this thesis the pathway for D-galacturonate catabolism was identified in the filamentous fungus Trichoderma reesei. The pathway consisted of four enzymes: NADPH-dependent D-galacturonate reductase (GAR1), L-galactonate dehydratase (LGD1), L-threo-3-deoxy-hexulosonate aldolase (LGA1) and NADPH-dependent glyceraldehyde reductase (GLD1). In this pathway D-galacturonate was converted to pyruvate and glycerol via L-galactonate, L-threo-3-deoxy-hexulosonate and L-glyceraldehyde. The enzyme activities of GAR1, LGD1 and LGA1 were present in crude mycelial extract only when T. reesei was grown on D-galacturonate. The activity of GLD1 was equally present on all the tested carbon sources. The corresponding genes were identified either by purifying and sequencing the enzyme or by expressing genes with homology to other similar enzymes in a heterologous host and testing the activities. The new genes that were identified were expressed in Saccharomyces cerevisiae and resulted in active enzymes. The GAR1, LGA1 and GLD1 were also produced in S. cerevisiae as active enzymes with a polyhistidine-tag, and purified and characterised. GAR1 and LGA1 catalysed reversible reactions, whereas only the forward reactions were observed for LGD1 and GLD1. When gar1, lgd1 or lga1 was deleted in T. reesei the deletion strain was unable to grow with D-galacturonate as the only carbon source, demonstrating that all the corresponding enzymes were essential for D-galacturonate catabolism and that no alternative D-galacturonate pathway exists in T. reesei. A challenge for biotechnology is to convert cheap raw materials to useful and more valuable products. Filamentous fungi are especially useful for the conversion of pectin, since they are efficient producers of pectinases. Identification of the fungal D-galacturonate pathway is of fundamental importance for the utilisation of pectin and its conversion to useful products.

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There is a growing interest in management of MSW through micro-treatment of organic fraction of municipal solid wastes (OFMSW) in many cities of India. The OFMSW fraction is high (> 80%) in many pockets within South Indian cities like Bangalore, Chikkamagalur, etc. and is largely represented by vegetable, fruit, packing and garden wastes. Among these, the last three have shown problems for easy decomposition. Fruit wastes are characterized by a large pectin supported fraction that decomposes quickly to organic acids (becomes pulpy) that eventually slow down anaerobic and aerobic decomposition processes. Paper fraction (newsprint and photocopying paper) as well as paddy straw (packing), bagasse (from cane juice stalls) and tree leaf litter (typical garden waste and street sweepings) are found in reasonably large proportions in MSW. These decompose slowly due to poor nutrients or physical state. We have examined the suitability of these substrates for micro-composting in plastic bins by tracking decomposition pattern and physical changes. It was found that fruit wastes decompose rapidly to produce organic acids and large leachate fraction such that it may need to be mixed with leachate absorbing materials (dry wastes) for good composting. Leaf litter, paddy straw and bagasse decompose to the tune of 90, 68 and 60% VS and are suitable for composting micro-treatment. Paper fractions even when augmented with 10% leaf compost failed to show appreciable decomposition in 50 days. All these feedstocks were found to have good biological methane potential (BMP) and showed promise for conversion to biogas under a mixed feed operation. Suitability of this approach was verified by operating a plug-flow type anaerobic digester where only leaf litter gathered nearby (as street sweepings) was used as feedstock. Here only a third of the BMP was realized at this scale (0.18 m(3) biogas/kg VS 0.55 m(3)/kg in BMP). We conclude that anaerobic digestion in plug-flow like digesters appear a more suitable micro-treatment option (2-10 kg VS/day) because in addition to compost it also produces biogas for domestic use nearby.

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An extracellular endopolygalacturonate lyase of Cytophaga johnsonii was purified from the culture filtrate. It appeared to be homogeneous as judged by polyacrylamide gel electrophoresis at pH 8.6 as well as pH 4.3. The purified enzyme had a pH optimum around 9.0 and required Ca++ ions for its maximum activity. The apparent Kmfor polygalacturonic acid was found to be 0.22%. Both paper and column chromatography indicated formation and accumulation of an unsaturated monomer along with unsaturated di-, tri-, tetra- and pentamers from polygalacturonic acid by the enzyme action, indicating that the enzyme cleaved the substrate randomly in a non-hydrolytic manner. The glycosidic linkage next to the non-reducing end of polygalacturonic acid was not resistant to attack by this enzyme unlike in other known polygalacturonate lyases.

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Leaves and leaf sheath of banana and areca husk (Areca catechu) constitute an important component of urban solid waste (USW) in India which are difficult to degrade under normal windrow composting conditions. A successful method of anaerobic digestion built around the fermentation properties of these feedstock has been evolved which uses no moving parts, pretreatment or energy input while enabling recovery of four products: fiber, biogas, compost and pest repellent. An SRT of 27 d and 35 d was found to be optimum for fiber recovery for banana leaf and areca husk, respectively. Banana leaf showed a degradation pattern different from other leaves with slow pectin-1 degradation (80%) and 40% lignin removal in 27 d SRT. Areca husk however, showed a degradation pattern similar to other plant biomass. Mass recovery levels for banana leaf were fiber-20%, biogas-70% (400 ml/g TS) and compost-10%. For areca husk recovery was fiber-50%, biogas-45% (250 ml/g TS) and compost-5%. (C) 2012 Elsevier Inc. All rights reserved.

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花粉管是有花植物受精过程中雄性生殖单位的载体,它同根毛、真菌菌丝一样,具有典型的极性顶端生长模式。裸子植物花粉与被子植物相比,具有萌发时间较长,生长缓慢等特点。但是目前人们对于裸子植物花粉萌发和花粉管生长的机理还不清楚。本文以裸子植物白皮松(Pinus bungeana)的花粉为材料,采用细胞学和生理生化方法,包括应用普通光学显微镜、荧光显微镜、激光扫描共聚焦显微镜、显微红外光谱(FTIR)和透射电镜(TEM)等技术,对其花粉萌发和花粉管生长过程进行了较为系统的研究,旨在进一步揭示裸子植物花粉管发育的调控机制。 本论文首先研究了外源Ca2+ 和3种调钙药物(A23187、EGTA、TMB8)对白皮松花粉萌发和花粉管生长的影响。结果表明,在离体培养条件下,高浓度的Ca2+(1%)能完全抑制白皮松花粉的萌发,低浓度的Ca2+ 则影响不大,而花粉萌发和花粉管生长的最适Ca2+ 浓度为0.01%。用Ca2+ 载体A23187、Ca2+ 螯合剂EGTA和钙通道阻滞剂TMB8分别处理花粉后,花粉萌发和花粉管生长均受到抑制。另外,用 Ca2+ 荧光探针 Fluo-3AM标记,对Ca2+ 的分布变化进行了观察,发现在花粉萌发的初期,Ca2+ 向萌发孔聚集。在正常生长的花粉管中Ca2+ 呈梯度分布,顶端荧光最强。与对照相比,A23187处理后花粉粒中荧光增强,而EGTA和TMB8处理的花粉粒中荧光强度均减弱。并且这3种调钙药物还破坏了花粉管顶端的Ca2+ 浓度梯度,最终导致花粉管的生长受阻。 花粉萌发和花粉管的生长依赖于RNA和蛋白质的不断合成。在放线菌素D的存在下,花粉萌发基本不受影响,但花粉管的生长速度下降,花粉管中RNA含量也减少。而经过放线菌酮处理后,花粉萌发和花粉管生长均受到抑制,花粉管中蛋白质含量降低,同时花粉管顶端显著膨大。通过SDS-PAGE的结果表明,花粉粒萌发前后蛋白质图谱有明显差异。FTIR光谱分析表明,两种抑制剂处理均导致花粉管壁的化学组成发生了变化,例如蛋白质和饱和酯含量减少,而羧酸的含量增加。此外,由放线菌酮和放线菌素D处理后,花粉管的超微结构也发生了明显变化,其中特别是花粉管顶端的分泌系统遭到严重破坏。 纤维素的正常合成对于白皮松花粉管的生长是必需的。在正常培养基中添加纤维素生物合成抑制剂2,6-二氯苯腈(DCB)后,花粉萌发几乎不受影响,但是花粉管的形态发生异常,生长速率降低。DCB处理还导致花粉管壁中纤维素含量下降,而胼胝质在花粉管顶端积累。用识别酯化果胶的JIM7和识别酸性果胶的JIM5对离体培养的白皮松花粉管进行标记后,发现果胶成分呈异常分布图式。FTIR光谱分析结果表明花粉管细胞壁中蛋白质、羧酸以及饱和酯含量增加。同时,在电镜下观察发现,花粉管细胞壁顶端呈现不均匀加厚,其中主要的细胞器,如高尔基体和线粒体等膜结构均遭到破坏。 上述结果说明,白皮松成熟花粉粒中已含有花粉萌发和花粉管早期生长所必需的Ca2+ 和RNA,但是在花粉管的后续伸长过程中仍需要外源Ca2+ 的参与以及新RNA、蛋白质的不断合成。与被子植物不同,裸子植物花粉萌发的启动也需要新蛋白的合成。尽管在花粉管中纤维素的含量很低,但是对于细胞壁的构建、花粉管的正常形态的维持起着关键作用。

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高分子凝胶广泛地存在于自然界以及日常生活中,按其形成作用力不同分为化学凝胶和物理凝胶两大类。由于高分子物理凝胶具有凝胶化的可逆性及其对环境条件强烈的响应性,因此,在近半个世纪的研究与应用中受到极大的关注。高分子溶液中的物理凝胶因其结构及形成机制复杂,在实验方面,除了散射技术及流变技术能够有效地揭示它的部分信息外,其它的实验手段很难用于这个领域的研究;在理论方面,化学凝胶的理论已经比较成熟,而物理凝胶的粘弹性质以及凝胶化是一个远离平衡态的松弛过程,除了一些特征的标度指数外,人们还没有得到适用于高分子物理凝胶的普适规律。当前,由于计算机模拟理论及模拟方法的发展,使得计算机模拟成为除了实验和理论研究方法之外的第三个重要的研究方法。但是,由于物理凝胶化行为的复杂性,用实验和理论获得的信息很难较好地描述凝胶化过程,而计算机模拟的高度透明性及反映信息的完整性,有助于理解这一复杂过程中所涉及的物理本质。因此,利用计算机模拟结合实验及理论方法深入研究高分子物理凝胶的形成机制、结构与性能关系已成为目前最有效的手段之一。 本论文主要运用Monte Carlo模拟方法,并结合小角中子散射(Small-Angle Neutron Scattering, SANS)和流变(Rheology)等实验手段从多个角度探讨了以下几类典型的高分子溶液物理凝胶化行为。 1. 温度对遥爪型三嵌段共聚物在选择性溶剂中的自组装及凝胶化行为影响的研究:采用二维简单方格子Monte Carlo模拟方法,结合逾渗(Percolation)理论,建立了溶胶-凝胶转变相图在统计热力学中的确定方法;甄别了具有特征构象的链,讨论了链及胶束的聚集,明晰了相互作用(体现为约化温度)、构象转变、聚集与凝胶化的一致的关联关系;提出了构象转变模型,进而明确了此体系的凝胶化过程,在微观尺度上表现为桥型链和环型链之间的竞争。 2. 模拟模型改进及其应用到持续长度对稀溶液中高分子链构象影响的研究:考虑到原始八位置键涨落模型效率低,实现复杂且不能应用到复杂的高分子体系,对该模型进行了改进,使其实现简单、效率高,并拓宽了该模型的应用范围。然后,以刚性对均聚物构象的影响为例,发现随着刚性增加,均聚物构象从球形椭球到棒状椭球的转变,并对比了自由连接链(Free Joint Chain, FJC)模型和蠕虫链(Wormlike Chain, WLC)模型在不同刚性范围内对高分子链末端距预测的偏差,首次给出了这两个经典模型的半定量的适用边界。 3. 溶剂尺寸对遥爪型三嵌段共聚物在选择性溶剂中的自组装及凝胶化行为影响的研究:用改进后的八位置键涨落Monte Carlo模型,研究了遥爪型三嵌段共聚物在选择性溶剂条件下的聚集和凝胶化对溶剂尺寸的依赖性,发现溶剂尺寸效应对凝胶化的作用是非单调的。由一个均聚物体系的对比模拟证明这种作用主要是由熵驱动的,并给出了中分子溶剂的半定量定义。在均聚物和嵌段共聚物溶液中,不同尺寸的溶剂分子可以使溶液由于高分子聚集不同而具有不同的微结构,并影响高分子链构象和溶液的性质。从多个角度研究了三嵌段共聚物在不同尺寸溶剂的溶液中所遵循的三种不同的凝胶化机理。 4. 聚氧化乙烯-氧化丙稀-氧化乙烯三嵌段共聚物(poly(ethylene oxide)-poly (propylene oxide)-poly-(ethylene oxide), PEO-PPO-PEO)重水溶液凝胶化的小角中子散射(SANS)和Monte Carlo研究:结合Pluronic F127(EO65PO99EO65)/D2O三嵌段共聚物溶液的特征,对照SANS数据,用改进后的八位置键涨落模型成功地从模拟中获得了F127/D2O的溶胶-凝胶转变相图。详细地考察了体系的微观结构,提出此类高分子溶液中形成的物理凝胶包含高分子逾渗网络的生成,以及被束缚溶剂(Bound Solvent)必须超过离散组分体系逾渗的临界体积分数的机理。着重研究了一定浓度的F127水溶液随温度升高引起的溶胶-凝胶转变以及凝胶-溶胶转变的Reentrant相行为,发现体系在低温区域的溶胶-凝胶转变遵循相同的机理,而在中等温度和较高温度以及不同浓度区域中的凝胶-溶胶转变遵循不同的机理。 5. 极性基团饱和度和溶剂条件对两亲性聚合物在溶液中的聚集行为和凝胶化影响的研究:用改进后的八位置键涨落模型,针对两亲性聚合物在不同溶剂条件的溶液建立了粗粒化模型,以两亲性聚合物中极性基团的饱和度,溶剂条件和高分子浓度为变量,考察了其对链构象、聚集及其凝胶化的影响。 6. 多糖水溶液凝胶化的流变和小角中子散射研究:用流变和SANS考察了两个多糖水溶液中物理凝胶化过程,针对由氢键主导的水基凝胶体系的典型特征进行了讨论,从分子链构象,聚集体结构及其关联以及流变特征等方面对聚强电解质角叉胶(Carrageenan)水溶液和聚弱电解质明胶(Pectin)水溶液进行了详细的讨论。考察了不同多糖的种类(聚合物链的电荷密度),盐的种类和浓度,溶液温度等对凝胶化和凝胶结构的影响,分析了不同多糖溶液的凝胶化机理。

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Monte Carlo simulation on the basis of the comblike coarse grained nonpolar/polar (NP) model has been carried out to study the polar group saturation effect on physical gelation of amphiphilic polymer solutions. The effects of polar group saturation due to hydrogen bonding or ion bridging on the sol-gel phase diagram, microstructure of aggregates, and chain conformation of amphiphilic polymer solutions under four different solvent conditions to either the nonpolar backbone or the polar side chain in amphiphilic polymer chains have been investigated. It is found that an increase of polar group saturation results in a monotonically decreased critical concentration of gelation point, which can be qualitatively supported by the dynamic theological measurements on pectin aqueous solutions. Furthermore, various solvent conditions to either the backbone or the side chain have significant impact on both chain conformation and microstructure of aggregates. When the solvent is repulsive to the nonpolar backbone but attractive to the polar side chain, the polymer chains are collapsed, and the gelation follows the mechanism of colloidal packing; at the other solvent conditions, the gelation follows the mechanism of random aggregation.

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To express and product a fluorescent antioxidant holo-alpha-phycocyanin (PC) of Spirulina platensis (Sp) with His-tag (rHHPC; recombinant holo-alpha-phycocyaninof Spirulina platensis with His-tag) in 5-l bench scale. A vector harbouring two cassettes was constructed: cpcA along with cpcE-cpcF in one cassette; ho1-pcyA in the other cassette. Lyases CpcE/F of Synechocystis sp. PCC6803 (S6) could catalyse the 82 site Cys in apo-alpha-PC of Sp linking with bilin chromophores, and rHHPC was biosynthesized in Escherichia coli BL21. The constant feeding mode was adopted, and transformant reached the biomass of rHHPC up to 0.55 g l(-1) broth in 5-litre bench scale. rHHPC was purified by Ni2+ affinity column conveniently. The absorbance and the fluorescence emission spectra of rHHPC had lambda(max) at 621 and 650 nm, respectively. The IC50 values of rHHPC were 277.5 +/- 25.8 mu g ml(-1) against hydroxyl radicals and 20.8 +/- 2.2 mu g ml(-1) against peroxyl radicals. Combinational biosynthesis of rHHPC was feasible, and the constant feeding mode was adopted to produce good yields of rHHPC. Fluorescent rHHPC with several unique qualitative and quantitative features was effective on scavenging hydroxyl and peroxyl radicals. A potent antioxidant rHHPC was co-expressed, produced and characterized for nutritional and pharmacological values, which would help to develop phycobiliproteins' applications in their fluorescent and biological activities.