Confocal and two-photon microscopy : image enhancement /

Confocal and two-photon microcopy have become essential tools in biological research and today many investigations are not possible without their help. The valuable advantage that these two techniques offer is the ability of optical sectioning. Optical sectioning makes it possible to obtain 3D visuahzation of the structiu-es, and hence, valuable information of the structural relationships, the geometrical, and the morphological aspects of the specimen. The achievable lateral and axial resolutions by confocal and two-photon microscopy, similar to other optical imaging systems, are both defined by the diffraction theorem. Any aberration and imperfection present during the imaging results in broadening of the calculated theoretical resolution, blurring, geometrical distortions in the acquired images that interfere with the analysis of the structures, and lower the collected fluorescence from the specimen. The aberrations may have different causes and they can be classified by their sources such as specimen-induced aberrations, optics-induced aberrations, illumination aberrations, and misalignment aberrations. This thesis presents an investigation and study of image enhancement. The goal of this thesis was approached in two different directions. Initially, we investigated the sources of the imperfections. We propose methods to eliminate or minimize aberrations introduced during the image acquisition by optimizing the acquisition conditions. The impact on the resolution as a result of using a coverslip the thickness of which is mismatched with the one that the objective lens is designed for was shown and a novel technique was introduced in order to define the proper value on the correction collar of the lens. The amoimt of spherical aberration with regard to t he numerical aperture of the objective lens was investigated and it was shown that, based on the purpose of our imaging tasks, different numerical apertures must be used. The deformed beam cross section of the single-photon excitation source was corrected and the enhancement of the resolution and image quaUty was shown. Furthermore, the dependency of the scattered light on the excitation wavelength was shown empirically. In the second part, we continued the study of the image enhancement process by deconvolution techniques. Although deconvolution algorithms are used widely to improve the quality of the images, how well a deconvolution algorithm responds highly depends on the point spread function (PSF) of the imaging system applied to the algorithm and the level of its accuracy. We investigated approaches that can be done in order to obtain more precise PSF. Novel methods to improve the pattern of the PSF and reduce the noise are proposed. Furthermore, multiple soiu'ces to extract the PSFs of the imaging system are introduced and the empirical deconvolution results by using each of these PSFs are compared together. The results confirm that a greater improvement attained by applying the in situ PSF during the deconvolution process.

Optical imaging and two-photon microscopy study of hemodynamic changes contralateral to ictal focus during epileptiform discharges

Il est relativement bien établi que les crises focales entraînent une augmentation régionale du flot sanguin dans le but de soutenir la demande énergétique en hémoglobine oxygénée des neurones épileptiques. Des changements hémodynamiques précoces ont également été rapportés dans la région homologue controlatérale, bien que ceci ait été moins bien caractérisé. Dans cette étude, notre objectif est de mieux caractériser, lors de crises focales, la nature des changements hémodynamiques précoces dans la région homologue controlatérale au foyer épileptique. L'imagerie optique intrinsèque (IOI) et la microscopie deux-photons sont utilisées pour étudier les changements hémodynamiques dans la région homologue controlatérale au site de crises focales induites par l’injection de 4-aminopyridine (4-AP) dans le cortex somatosensitif ipsilatéral de souris. Dans l'étude d'IOI, des changements de l’oxyhémoglobine (HbO), de la désoxyhémoglobine (HbR) et du débit sanguin cérébral ont été observées dans la région homologue controlatérale au site de crises focales lors de toutes les crises. Toutefois, ces changements étaient hétérogènes, sans patron cohérent et reproduisible. Nos expériences avec la microscopie deux-photons n’ont pas révélé de changements hémodynamiques significatifs dans la région homotopique controlatérale lors de trains de pointes épileptiques. Nos résultats doivent être interprétés avec prudence compte tenu de plusieurs limitations: d’une part absence de mesures électrophysiologiques dans la région d’intérêt controlatérale au foyer simultanément à l’imagerie deux-photons et à l'IOI; d’autre part, lors des expériences avec le deux-photons, incapacité à générer de longues décharges ictales mais plutôt des trains de pointes, couverture spatiale limitée de la région d’intérêt controlatérale, et faible puissance suite au décès prématuré de plusieurs souris pour diverses raisons techniques. Nous terminons en discutant de divers moyens pour améliorer les expériences futures.

Characteristics of two-photon absorption in methanol solutions of Rhodamine 6G using laser induced pulsed photoacoustics

Two-photon absorption in methanol solutions of Rhodamine 6G is investigated by photoacoustics using the second harmonic of a pulsed Nd:YAG laser. Competition between one-photon and two-photon processes is observed, depending critically on the sample concentration and input light flux.

Studies on Two-Photon Absorption of Aniline Using Thermal Lens Effect

Two-photon absorption spectrum of aniline is recorded using thermal lens effect with optical parametric oscillator as the pump source. Studies show that the two-photon absorption spectrum observed corresponds to I Al -. I B2 transition of aniline.

Side illumination fluorescence emission characteristics from a dye doped polymer optical fiber under two-photon excitation.

Two-photon excited (TPE) side illumination fluorescence studies in a Rh6G-RhB dye mixture doped polymer optical fiber (POF) and the effect of energy transfer on the attenuation coefficient is reported. The dye doped POF is pumped sideways using 800 nm, 70 fs laser pulses from a Ti:sapphire laser, and the TPE fluorescence emission is collected from the end of the fiber for different propagation distances. The fluorescence intensity of RhB doped POF is enhanced in the presence of Rh6G as a result of energy transfer from Rh6G to RhB. Because of the reabsorption and reemission process in dye molecules, an effective energy transfer is observed from the shorter wavelength part of the fluorescence spectrum to the longer wavelength part as the propagation distance is increased in dye doped POF. An energy transfer coefficient is found to be higher at shorter propagation distances compared to longer distances. A TPE fluorescence signal is used to characterize the optical attenuation coefficient in dye doped POF. The attenuation coefficient decreases at longer propagation distances due to the reabsorption and reemission process taking place within the dye doped fiber as the propagation distance is increased.

Photoacoustic detection of two photon absorption in formaldehyde using pulsed dye laser

Absorption spectra of formaldehyde molecule in the gas phase have been recorded using photoacoustic (PA) technique with pulsed dye laser at various power levels. The spectral profiles at higher power levels are found to be different from that obtained at lower laser powers. Two photon absorption (TPA) is found to be responsible for the photoacoustic signal at higher laser power while the absorption at lower laser power level is attributed to one photon absorption (OPA) process. Probable assignments for the different transitions are given in this paper.

Observation of two-photon induced photoemission optogalvanic effect

Observation of laser induced two-photon photoemission optogalvanic (TPPOG) effect from tungsten electrode in a discharge cell using 564 nm radiation obtained from a pulsed dye laser is described. The magnitude of the POG signal is studied as a function of laser energy under various discharge parameters. Competition between one-photon and two-photon processes has been observed when nitrogen gas is used in the discharge cell.

Observation of two-photon absorption in rhodamine 6G using photoacoustic technique

Two-photon absorption in Rhodamine 6G using the second harmonic of a pulsed Q-switched Nd:YAG laser has been studied by photoacoustic technique. It is observed that there is a competition between one-photon and two-photon absorption processes. At lower concentration the two-photon process is predominant over the one-photon process.

Laser Induced Thermal Lens Effect in Rhodamine B — Signature of Resonant Two Photon Absorption

Measurement of thermal lensing signal as a function of laser power made in Rhodamine B solutions in methanol give clear evidence of two photon absorption process within certain concentration ranges when 488 nm Ar+ laser beam is used as the pump source. Only one photon process is found to occur when 514 nm and 476 nm beams are used as the pump.

Nd:Glass laser-induced damage to thin films, two-photon excited fluorescence and plasma studies

Laser-induced damage is the principal limiting constraint in the design and operation of high-power laser systems used in fusion and other high-energy laser applications. Therefore, an understanding of the mechanisms which cause the radiation damage to the components employed in building a laser and a knowledge of the damage threshold of these materials are of great importance in designing a laser system and to operate it without appreciable degradation in performance. This thesis, even though covers three distinct problems for investigations using a dye Q-switched multimode Nd:glass laser operating at 1062 nm and emitting 25 ns (FWHM) pulses, lays its main thrust on damage threshold studies on thin films. Using the same glass laser two-photon excited fluorescence in rhodamine 6G and generation and characterisation of a carbon plasma have also been carried out. The thesis is presented in seven chapters.

Nd:Glass Laser-Induced Damage To Thin Films, Two-Photon Excited Fluorescence And Plasma Studies

Laser-induced damage is the principal limiting constraint in the design and operation of high-power laser systems used in fusion and other high-energy laser applications. Therefore, an understanding of the mechanisms which cause the radiation damage to the components employed in building a laser and a knowledge of the damage threshold of these materials are of great importance in designing a laser system and to operate it without appreciable degradation in performance. This thesis, even though covers three distinct problems for investigations using a dye Q-switched multimode Nd:glass laser operating at 1062 nm and emitting 25 ns (FWHM) pulses, lays its main thrust on damage threshold studies on thin films. Using the same glass laser two-photon excited fluorescence in rhodamine 6G and generation and characterisation of a carbon plasma have also been carried out.

Two-photon ionization of atomic inner-shells

Die Summation ueber des vollstaendige Spektrum des Atoms, die in der Stoehrungstheorie zweiter Ordnung vorkommt, wurde mit Hilfe der Greenschen Funktion Methode berechnet. Die Methode der Greenschen Funktion verlangt die Berechnung der unterschiedlichen Greenschen Funktionen: eine Coulomb-Greensche-Funktion im Fall von wasserstoffaehnlichen Ionen und eine Zentral-feld-Greensche-Funktion im Fall des Vielelektronen-Atoms. Die entwickelte Greensche Funktion erlaubte uns die folgenden atomaren Systeme in die Zweiphotonenionisierung der folgenden atomaren Systeme zu untersuchen: - wasserstoffaehnliche Ionen, um relativistische und Multipol-Effekte aufzudecken, - die aeussere Schale des Lithium; Helium und Helium-aehnliches Neon im Grundzustand, um taugliche Modelle des atomaren Feldes zu erhalten, - K- und L-Schalen des Argon, um die Vielelektronen-Effekte abzuschaetzen. Zusammenfassend, die relativistische Effekte ergeben sich in einer allgemeinen Reduzierung der Zweiphotonen Wirkungsquerschnitte. Zum Beispiel, betraegt das Verhaeltnis zwischen den nichtrelativistischen und relativistischen Wirkungsquerschnitten einen Faktor zwei fuer wasserstoffaehnliches Uran. Ausser dieser relativistischen Kontraktion, ist auch die relativistische Aufspaltung der Zwischenzustaende fuer mittelschwere Ionen sichtbar. Im Gegensatz zu den relativistischen Effekten, beeinflussen die Multipol-Effekte die totalen Wirkungsquerschnitte sehr wenig, so dass die Langwellennaeherung mit der exakten Naeherung fuer schwere Ionen sogar innerhalb von 5 Prozent uebereinstimmt. Die winkelaufgeloesten Wirkungsquerschnitte werden durch die relativistischen Effekte auf eine beeindruckende Weise beeinflusst: die Form der differentiellen Wirkungsquerschnitte aendert sich (qualitativ) abhaengig von der Photonenenergie. Ausserdem kann die Beruecksichtigung der hoeheren Multipole die elektronische Ausbeute um einen Faktor drei aendern. Die Vielelektronen-Effekte in der Zweiphotonenionisierung wurden am Beispiel der K- und L-Schalen des Argon analysiert. Hiermit wurden die totalen Wirkungsquerschnitte in einer Ein-aktives-Elektron-Naeherung (single-active-electron approximation) berechnet. Es hat sich herausgestellt, dass die Elektron--Elektron-Wechselwirkung sehr wichtig fuer die L-Schale und vernachlaessigbar fuer die K-Schale ist. Das bedeutet, dass man die totalen Wirkungsquerschnitte mit wasserstoffaehnlichen Modellen im Fall der K-Schale beschreiben kann, aber fuer die L-Schale fortgeschrittene Modelle erforderlich sind. Die Ergebnisse fuer Vielelektronen-Atome wurden mittels einer Dirac-Zentral-feld-Greenschen Funktion erlangt. Ein numerischer Algorithmus wurde urspruenglich von McGuire (1981) fuer der Schroedinger-Zentral-feld-Greensche Funktion eingefuehrt. Der Algorithmus wurde in dieser Arbeit zum ersten Mal fuer die Dirac-Gleichung angewandt. Unser Algorithmus benutzt die Kummer- und Tricomi-Funktionen, die mit Hilfe eines zuverlaessigen, aber noch immer langsamen Programmes berechnet wurden. Die Langsamkeit des Programms begrenzt den Bereich der Aufgaben, die effizient geloest werden koennen. Die Zentral-feld-Greensche Funktion konnte bei den folgenden Problemen benutzt werden: - Berechnung der Zweiphotonen-Zerfallsraten, - Berechnung der Zweiphotonenanregung und -ionisierungs-Wirkungsquerschnitte, - Berechnung die Multiphotonenanregung und -ionisierungs-Wirkungsquerschnitte, - Berechnung einer atomaren Vielelektronen-Green-Funktion. Von diesen Aufgaben koennen nur die ersten beiden in angemessener Zeit geloest werden. Fuer die letzten beiden Aufgaben ist unsere Implementierung zu langsam und muss weiter verbessert werden.

Two-photon decay of the 1s2s ^1S_0 state in _36Kr^34+ produced by resonant transfer and excitation

The doubly excited 2s2p ^1P_1 level of Kr^{34+} populated via resonant transfer and excitation (RTE) feeds selectively the metastable ls2s ^1 S_0 state which can only decay via simultaneous emission of two photons to the ground state 1s^2 ^1 S_0. X-ray/X-ray coincidence measurements in heavy ionatom collisions enable the direct measurement of the spectral distribution of the two-photon decay in He-like ions. In addition, we observe strong photon cascades indueed by radiative electron capture.

Hyperfine structure and isotopic shift of the n^2 P_J levels (n = 7-10) of ^203,205 TI measured by Doppler-free two-photon spectroscopy

Using Doppler-free two-photon absorption spectroscopy, we have measured hyperfine splitting constants as well as isotopic level shifts of the 6s^2 np ^2 P_l/2,3/2 states in (n=7-10) in ^203 TI and ^205 TI. Calculations for hyperfine constants and electron density at the nucleus have been performed by the Dirac-Fock method. The experimental results are compared with these calculations as well as with the predictions of the semiempirical theory.