Utilização de técnicas multivariadas na avaliação da divergência genética de populações de girassol (Helianthus annuus L.)

Pós-graduação em Agronomia (Energia na Agricultura) - FCA

Regimes térmico e hídrico em solos sob ecossistemas naturais e área agrícola no Leste da Amazônia

A temperatura e umidade do solo são variáveis cujo conhecimento é fundamental para determinar os balanços de energia e água na biosfera. Os regimes térmico e hídrico dos solos sob cada ecossistema apresentam variações consideráveis, de acordo com sua mineralogia, o clima local e a vegetação. Nesse contexto, as temperaturas e umidades do solo foram medidas sob três ecossistemas existentes na região leste da Amazônia, a saber: floresta nativa (FLONA Caxiuanã, 01° 42' 30" S e 51° 31' 45" W), pastagem nativa (Soure, 00° 43' 25" S e 48° 30' 29" W) e área agrícola (!garapé-Açu, 01° 07' 59" S e 47° 36' 55" W). Os dados de campo na floresta e na pastagem foram coletados entre dezembro de 2001 e fevereiro de 2005; enquanto que na área agrícola, o monitoramento foi limitado de agosto de 2003 a fevereiro de 2005. Estas observações das variáveis físicas do solo foram analisadas levando em consideração as variáveis meteorológicas medidas simultaneamente tais como o fluxo de radiação solar incidente e a precipitação pluviométrica, que interferem diretamente nas variáveis do solo em cada sitio escolhido para estudo. As temperaturas do solo foram monitoradas por meio de sondas térmicas em profundidades de 0,05; 0,20 e 0,50 m. Fluxímetros de calor mediram esta variável em níveis de profundidade em 0,05 e 0,20 m. A umidade volumétrica do solo na camada superior de 0,30 m foi medida por sensor de sonda dupla por Reflectometria no Domínio do Tempo (TDR) em cada sitio. Foram feitas analises considerando as respostas do solo durante o período seco e chuvoso local, nestes três ecossistemas representativos do leste da Amazônia. Estimativas de difusividade térmica aparente do solo foram feitas pelos métodos da amplitude e da fase usando os dados de propagação do pulso diário de calor nesses solos. Os resultados mostraram valores bem diferentes, porém,no primeiro método pareceu mais confiável e adequado para o modelamento numérico. Como esperado, considerando a sua pouca cobertura vegetal, as temperaturas dos solos nos níveis superficiais, apresentaram grandes variações na pastagem e na área agrícola. Inesperadamente, as temperaturas na profundidade de 0,5 m abaixo da floresta mostraram maiores variações de amplitude que as profundidades de 0,20 e 0,05 m. O modelamento numérico das variações temporais da temperatura, em função da profundidade, para cada solo foi feito através do método harmônico Os resultados mostraram que o primeiro harmônico representou mais de 90% da variação total observada do pulso diário da temperatura da pastagem e área agrícola em 0,2 e 0,05 m de profundidade. Performance similar do modelamento foi observada na floresta nos níveis de 0,05 e 0,20 m. A magnitude dos fluxos de calor abaixo da pastagem e área agrícola atingiram valores seis vezes maiores que aqueles observados sob a floresta. Os resultados mostraram que, para a camada do solo superior de 0,30 m, a umidade volumétrica do solo sob a floresta é maior que sob os outros ecossistemas estudados neste trabalho. Este resultado é devido aparentemente; à proteção da floresta contra a evaporação da superfície do solo. Uma análise do comportamento sazonal e diário das temperaturas e umidade solos em resposta à radiação solar e precipitação é apresentada. Estudos de caso da taxa de perda da umidade do solo depois de significativa recarga de água por eventos de precipitação, também foram analisados. Algumas estimativas diárias de diminuição de água e recarga durante a noite e madrugada por subida de água de camadas subjacentes para a camada de 0.30 m foram feitas. Este trabalho analisou a maior serie temporal dos dados de temperatura e umidade dos solos coletados com alta freqüência de amostragem disponível até o momento, para o leste da Amazônia. Foi possível caracterizar as diferenças dos regimes destas variáveis físicas, abaixo de três ecossistemas importantes desta região. Estudos futuros dos minerais e materiais orgânicos nestes solos, bem como dos índices de área foliar e da biomassa das coberturas vegetais desses ecossistemas, melhoraria a compreensão dos regimes descritos neste trabalho.

Análise de componentes principais para características de crescimento em bovinos de corte

The objetive of this research was to study the relation among body weight and average daily gain in different ages, using principal components analysis. Data on 1663 birth weight (BW), weaning weight adjusted to 230 days (WW), yearling weight adjusted to 365 days (YW), long yearling weight adjusted to 550 days (LYW), average daily gain from birth to weaning (AGW), average daily gain from weaning to 365 days (AGY) and average daily gain from 365 days weight to 550 day weight (AGL) from crossbred animals, and data on 320 observations of the same traits from straightbreed Nellore animals were analysed. The model included the fixed effects of breed (only crossbred data), contemporary group, and linear and quadratic effects of age at calving. For body weight in different ages, the first principal component contrasted heavier and light animals after birth and explained about 79,0% and 78,0% of the variation for data on crossbred and Nellore animals, respectively. The second principal component compared heavier animals at weaning and yearling weight those at long yearling weight. It explained around 13,5% and 15,5% of the total variation, respectively, for data on F1 and Nellore breed. The major source of variation among animals on the two data set for body weight was due to differences in weight followed by differences in the ages they got those weight. For the traits expressed as average daily gain, the variation among animals was due to differences in birth season, the first principal component explaining about 52,0% of the variation on crossbred animals. This component compared animal with higher AGY with those with higher AGW and AGL. For data on Nellore breed, the first component explain about 56,0% of the total variation and also compared animals with higher AGY with those with higher AGW and AGL.

Modeling the exergy behavior of human body

Exergy analysis is applied to assess the energy conversion processes that take place in the human body, aiming at developing indicators of health and performance based on the concepts of exergy destroyed rate and exergy efficiency. The thermal behavior of the human body is simulated by a model composed of 15 cylinders with elliptical cross section representing: head, neck, trunk, arms, forearms, hands, thighs, legs, and feet. For each, a combination of tissues is considered. The energy equation is solved for each cylinder, being possible to obtain transitory response from the body due to a variation in environmental conditions. With this model, it is possible to obtain heat and mass flow rates to the environment due to radiation, convection, evaporation and respiration. The exergy balances provide the exergy variation due to heat and mass exchange over the body, and the exergy variation over time for each compartments tissue and blood, the sum of which leads to the total variation of the body. Results indicate that exergy destroyed and exergy efficiency decrease over lifespan and the human body is more efficient and destroys less exergy in lower relative humidities and higher temperatures. (C) 2012 Elsevier Ltd. All rights reserved.

TV-L1 optical flow estimation

[EN] This article describes an implementation of the optical flow estimation method introduced by Zach, Pock and Bischof. This method is based on the minimization of a functional containing a data term using the L norm and a regularization term using the total variation of the flow. The main feature of this formulation is that it allows discontinuities in the flow field, while being more robust to noise than the classical approach. The algorithm is an efficient numerical scheme, which solves a relaxed version of the problem by alternate minimization.

Robust optical flow estimation

[EN] In this work, we describe an implementation of the variational method proposed by Brox et al. in 2004, which yields accurate optical flows with low running times. It has several benefits with respect to the method of Horn and Schunck: it is more robust to the presence of outliers, produces piecewise-smooth flow fields and can cope with constant brightness changes. This method relies on the brightness and gradient constancy assumptions, using the information of the image intensities and the image gradients to find correspondences. It also generalizes the use of continuous L1 functionals, which help mitigate the efect of outliers and create a Total Variation (TV) regularization. Additionally, it introduces a simple temporal regularization scheme that enforces a continuous temporal coherence of the flow fields.

Il metodo di steepest descent per la regolarizzazione di immagini

Scopo della tesi è la descrizione di un metodo per il calcolo di minimi di funzionali, basato sulla steepest descent. L'idea principale è quella di considerare un flusso nella direzione opposta al gradiente come soluzione di un problema di Cauchy in spazi di Banach, che sotto l'ipotesi di Palais-Smale permette di determinare minimi. Il metodo viene applicato al problema di denoising e segmentazione in elaborazione di immagini: vengono presentati metodi classici basati sull'equazione del calore, il total variation ed il Perona Malik. Nell'ultimo capitolo il grafico di un'immagine viene considerato come varietà, che induce una metrica sul suo dominio, e viene nuovamente utilizzato il metodo di steepest descent per costruire algoritmi che tengano conto delle caratteristiche geometriche dell'immagine.

Funzioni a variazione limitata per la ricolorazione di un'immagine

Nella tesi si intende ricolorare alcune porzioni di un'immagine delle quali è nota soltanto la scala dei grigi. Il colore viene considerato nello spazio RGB e decomposto in cromaticità e luminosità. Il problema viene espresso come problema di minimo di un funzionale detto di ``Total Variation'', definito sulle funzioni a variazione limitata BV. Si introduce la nozione di funzione BV di R^n, le principali proprietà di queste funzioni e in particolare si enuncia un teorema di compattezza. Si utilizzano infine tali risultati per ottenere l'esistenza di un punto di minimo per il funzionale che risolve il problema della ricolorazione.

Compressed sensing in digital tomosynthesis reconstruction

In this work we study a model for the breast image reconstruction in Digital Tomosynthesis, that is a non-invasive and non-destructive method for the three-dimensional visualization of the inner structures of an object, in which the data acquisition includes measuring a limited number of low-dose two-dimensional projections of an object by moving a detector and an X-ray tube around the object within a limited angular range. The problem of reconstructing 3D images from the projections provided in the Digital Tomosynthesis is an ill-posed inverse problem, that leads to a minimization problem with an object function that contains a data fitting term and a regularization term. The contribution of this thesis is to use the techniques of the compressed sensing, in particular replacing the standard least squares problem of data fitting with the problem of minimizing the 1-norm of the residuals, and using as regularization term the Total Variation (TV). We tested two different algorithms: a new alternating minimization algorithm (ADM), and a version of the more standard scaled projected gradient algorithm (SGP) that involves the 1-norm. We perform some experiments and analyse the performance of the two methods comparing relative errors, iterations number, times and the qualities of the reconstructed images. In conclusion we noticed that the use of the 1-norm and the Total Variation are valid tools in the formulation of the minimization problem for the image reconstruction resulting from Digital Tomosynthesis and the new algorithm ADM has reached a relative error comparable to a version of the classic algorithm SGP and proved best in speed and in the early appearance of the structures representing the masses.

Cosmogenic 180W variations in meteorites and re-assessment of a possible 184Os–180W decay system

We measured tungsten (W) isotopes in 23 iron meteorites and the metal phase of the CB chondrite Gujba in order to ascertain if there is evidence for a large-scale nucleosynthetic heterogeneity in the p-process isotope 180W in the solar nebula as recently suggested by Schulz et al. (2013). We observed large excesses in 180W (up to ≈ 6 ε) in some irons. However, significant within-group variations in magmatic IIAB and IVB irons are not consistent with a nucleosynthetic origin, and the collateral effects on 180W from an s-deficit in IVB irons cannot explain the total variation. We present a new model for the combined effects of spallation and neutron capture reactions on 180W in iron meteorites and show that at least some of the observed within-group variability is explained by cosmic ray effects. Neutron capture causes burnout of 180W, whereas spallation reactions lead to positive shifts in 180W. These effects depend on the target composition and cosmic-ray exposure duration; spallation effects increase with Re/W and Os/W ratios in the target and with exposure age. The correlation of 180W/184W with Os/W ratios in iron meteorites results in part from spallogenic production of 180W rather than from 184Os decay, contrary to a recent study by Peters et al. (2014). Residual ε180W excesses after correction for an s-deficit and for cosmic ray effects may be due to ingrowth of 180W from 184Os decay, but the magnitude of this ingrowth is at least a factor of ≈2 smaller than previously suggested. These much smaller effects strongly limit the applicability of the putative 184Os-180W system to investigate geological problems.

Sources of familial aggregation and co-aggregation of fasting blood glucose and nutritional factors among Mexican -Americans in Starr County, Texas

The purpose of this study was to determine the effects of nutrient intake, genetic factors and common household environmental factors on the aggregation of fasting blood glucose among Mexican-Americans in Starr County, Texas. This study was designed to determine: (a) the proportion of variation of fasting blood glucose concentration explained by unmeasured genetic and common household environmental effects; (b) the degree of familial aggregation of measures of nutrient intake; and (c) the extent to which the familial aggregation of fasting blood glucose is explained by nutrient intake and its aggregation. The method of path analysis was employed to determine these various effects.^ Genes play an important role in fasting blood glucose: Genetic variation was found to explain about 40% of the total variation in fasting blood glucose. Common household environmental effects, on the other hand, explained less than 3% of the variation in fasting blood glucose levels among individuals. Common household effects, however, did have significant effects on measures of nutrient intake, though it explained only about 10% of the total variance in nutrient intake. Finally, there was significant familial aggregation of nutrient intake measures, but their aggregation did not contribute significantly to the familial aggregation of fasting blood glucose. These results imply that similarities among relatives for fasting blood glucose are not due to similarities in nutrient intake among relatives. ^

Major and trace element content of the 17 lithostratigraphic units recovered during DSDP Leg 49 (Table 1)

IPOD Leg 49 recovered basalts from 9 holes at 7 sites along 3 transects across the Mid-Atlantic Ridge: 63°N (Reykjanes), 45°N and 36°N (FAMOUS area). This has provided further information on the nature of mantle heterogeneity in the North Atlantic by enabling studies to be made of the variation of basalt composition with depth and with time near critical areas (Iceland and the Azores) where deep mantle plumes are thought to exist. Over 150 samples have been analysed for up to 40 major and trace elements and the results used to place constraints on the petrogenesis of the erupted basalts and hence on the geochemical nature of their source regions. It is apparent that few of the recovered basalts have the geochemical characteristics of typical "depleted" midocean ridge basalts (MORB). An unusually wide range of basalt compositions may be erupted at a single site: the range of rare earth patterns within the short section cored at Site 413, for instance, encompasses the total variation of REE patterns previously reported from the FAMOUS area. Nevertheless it is possible to account for most of the compositional variation at a single site by partial melting processes (including dynamic melting) and fractional crystallization. Partial melting mechanisms seem to be the dominant processes relating basalt compositions, particularly at 36°N and 45°N, suggesting that long-lived sub-axial magma chambers may not be a consistent feature of the slow-spreading Mid-Atlantic Ridge. Comparisons of basalts erupted at the same ridge segment for periods of the order of 35 m.y. (now lying along the same mantle flow line) do show some significant inter-site differences in Rb/Sr, Ce/Yb, 87Sr/86Sr, etc., which cannot be accounted for by fractionation mechanisms and which must reflect heterogeneities in the mantle source. However when hygromagmatophile (HYG) trace element levels and ratios are considered, it is the constancy or consistency of these HYG ratios which is the more remarkable, implying that the mantle source feeding a particular ridge segment was uniform with respect to these elements for periods of the order of 35 m.y. and probably since the opening of the Atlantic. Yet these HYG element ratios at 63°N are very different from those at 45°N and 36°N and significantly different from the values at 22°N and in "MORB". The observed variations are difficult to reconcile with current concepts of mantle plumes and binary mixing models. The mantle is certainly heterogeneous, but there is not simply an "enriched" and a "depleted" source, but rather a range of sources heterogeneous on different scales for different elements - to an extent and volume depending on previous depletion/enrichment events. HYG element ratios offer the best method of defining compositionally different mantle segments since they are little modified by the fractionation processes associated with basalt generation.

Seawater carbonate chemistry and biological processes of foraminifera, Globigerinoides ruber and Globigerinella siphonifera during experiments, 2011

Specimens of two species of planktic foraminifera, Globigerinoides ruber and Globigerinella siphonifera, were grown under controlled laboratory conditions at a range of temperatures (18-31 °C), salinities (32-44 psu) and pH levels (7.9-8.4). The shells were examined for their calcium isotope compositions (d44/40Ca) and strontium to calcium ratios (Sr/Ca) using Thermal Ionization Mass Spectrometry and Inductively Coupled Plasma Mass Spectrometry. Although the total variation in d44/40Ca (~0.3 per mill) in the studied species is on the same order as the external reproducibility, the data set reveals some apparent trends that are controlled by more than one environmental parameter. There is a well-defined inverse linear relationship between d44/40Ca and Sr/Ca in all experiments, suggesting similar controls on these proxies in foraminiferal calcite independent of species. Analogous to recent results from inorganically precipitated calcite, we suggest that Ca isotope fractionation and Sr partitioning in planktic foraminifera are mainly controlled by precipitation kinetics. This postulation provides us with a unique tool to calculate precipitation rates and draws support from the observation that Sr/Ca ratios are positively correlated with average growth rates. At 25 °C water temperature, precipitation rates in G. siphonifera and G. ruber are calculated to be on the order of 2000 and 3000 µmol/m**2/h, respectively. The lower d44/40Ca observed at 29 °C in both species is consistent with increased precipitation rates at high water temperatures. Salinity response of d44/40Ca (and Sr/Ca) in G. siphonifera implies that this species has the highest precipitation rates at the salinity of its natural habitat, whereas increasing salinities appear to trigger higher precipitation rates in G. ruber. Isotope effects that cannot be explained by precipitation rate in planktic foraminifera can be explained by a biological control, related to a vacuolar pathway for supply of ions during biomineralization and a pH regulation mechanism in these vacuoles. In case of an additional pathway via cross-membrane transport, supplying light Ca for calcification, the d44/40Ca of the reservoir is constrained as -0.2 per mill relative to seawater. Using a Rayleigh distillation model, we calculate that calcification occurs in a semi-open system, where less than half of the Ca supplied by vacuolization is utilized for calcite precipitation. Our findings are relevant for interpreting paleo-proxy data on d44/40Ca and Sr/Ca in foraminifera as well as understanding their biomineralization processes.

Low dimensionality of supraspinally induced force fields

Recent experiments using electrical and N-methyl-d-aspartate microstimulation of the spinal cord gray matter and cutaneous stimulation of the hindlimb of spinalized frogs have provided evidence for a modular organization of the frog’s spinal cord circuitry. A “module” is a functional unit in the spinal cord circuitry that generates a specific motor output by imposing a specific pattern of muscle activation. The output of a module can be characterized as a force field: the collection of the isometric forces generated at the ankle over different locations in the leg’s workspace. Different modules can be combined independently so that their force fields linearly sum. The goal of this study was to ascertain whether the force fields generated by the activation of supraspinal structures could result from combinations of a small number of modules. We recorded a set of force fields generated by the electrical stimulation of the vestibular nerve in seven frogs, and we performed a principal component analysis to study the dimensionality of this set. We found that 94% of the total variation of the data is explained by the first five principal components, a result that indicates that the dimensionality of the set of fields evoked by vestibular stimulation is low. This result is compatible with the hypothesis that vestibular fields are generated by combinations of a small number of spinal modules.

Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid

The genetic basis of heterosis was investigated in an elite rice hybrid by using a molecular linkage map with 150 segregating loci covering the entire rice genome. Data for yield and three traits that were components of yield were collected over 2 years from replicated field trials of 250 F2:3 families. Genotypic variations explained from about 50% to more than 80% of the total variation. Interactions between genotypes and years were small compared with the main effects. A total of 32 quantitative trait loci (QTLs) were detected for the four traits; 12 were observed in both years and the remaining 20 were detected in only one year. Overdominance was observed for most of the QTLs for yield and also for a few QTLs for the component traits. Correlations between marker heterozygosity and trait expression were low, indicating that the overall heterozygosity made little contribution to heterosis. Digenic interactions, including additive by additive, additive by dominance, and dominance by dominance, were frequent and widespread in this population. The interactions involved large numbers of marker loci, most of which individually were not detectable on single-locus basis; many interactions among loci were detected in both years. The results provide strong evidence that epistasis plays a major role as the genetic basis of heterosis.