Microfacies and sequence stratigraphy of the Amapa Formation, Late Paleocene to Early Eocene, Foz do Amazonas Basin, Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Contrasting intra versus interspecies DNA sequence variation for representatives of the Batrachospermales (Rhodophyta): Insights from a DNA barcoding approach

Sixty-five accessions of the species-rich freshwater red algal order Batrachospermales were characterized through DNA sequencing of two regions: the mitochondrial cox1 gene (664 bp), which is proposed as the DNA barcode for red algae, and the UPA (universal plastid amplicon) marker (370 bp), which has been recently identified as a universally amplifying region of the plastid genome. upgma phenograms of both markers were consistent in their species-level relationships, although levels of sequence divergence were very different. Intraspecific variation of morphologically identified accessions for the cox1 gene ranged from 0 to 67 bp (divergences were highest for the two taxa with the greatest number of accessions; Batrachospermum helminthosum and Batrachospermum macrosporum); while in contrast, the more conserved universal plastid amplicon exhibited much lower intraspecific variation (generally 0-3 bp). Comparisons to previously published mitochondrial cox2-3 spacer sequences for B. helminthosum indicated that the cox1 gene and cox2-3 spacer were characterized by similar levels of sequence divergence, and phylogeographic patterns based on these two markers were consistent. The two taxa represented by the largest numbers of specimens (B. helminthosum and B. macrosporum) have cox1 intraspecific divergence values that are substantially higher than previously reported, but no morphological differences can be discerned at this time among the intraspecific groups revealed in the analyses. DNA barcode data, which are based on a short fragment of an organellar genome, need to be interpreted in conjunction with other taxonomic characters, and additional batrachospermalean taxa need to be analyzed in detail to be able to draw generalities regarding intraspecific variation in this order. Nevertheless, these analyses reveal a number of batrachospermalean taxa worthy of more detailed DNA barcode study, and it is predicted that such research will have a substantial effect on the taxonomy of species within the Batrachospermales in the future.

MOLECULAR PHYLOGENY of THE GENUS KUMANOA (BATRACHOSPERMALES, RHODOPHYTA)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Photosynthetic performance of freshwater Rhodophyta in response to temperature, irradiance, pH and diurnal rhythm

Responses of net photosynthetic rates to temperature, irradiance, pH/inorganic carbon and diurnal rhythm were analyzed in 15 populations of eight freshwater red algal species in culture and natural conditions. Photosynthetic rates were determined by oxygen concentration using the light and dark bottles technique. Parameters derived from the photosynthesis-irradiance curves indicated adaptation to low irradiance for all freshwater red algae tested, confirming that they tend to occur under low light regimes. Some degree of photoinhibition (β = -0.33-0.01 mg O2 g-1 DW h-1 (μmol photons m-2 s-1)-1) was found for all species/populations analyzed, whereas light compensation points (lc) were very low (≤ 2 μmol photons m- photons s-1) for most algae tested. Saturation points were low for all algae tested (lk = 6-54 μmol photons m-2 S-1; lS = 20-170 μmol photons m-2 s-1). Rates of net photosynthesis and dark respiration responded to the variation in temperature. Optimum temperature values for net photosynthesis were variable among species and populations so that best performances were observed under distinct temperature conditions (10, 15, 20 or 25°C). Rates of dark respiration exhibited an increasing trend with temperature, with highest values under 20-25°C. Results from pH experiments showed best photosynthetic performances under pH 8.5 or 6.5 for all but one species, indicating higher affinity for inorganic carbon as bicarbonate or indistinct use of bicarbonate and free carbon dioxide. Diurnal changes in photosynthetic rates revealed a general pattern for all algae tested, which was characterized by two relatively clear peaks, with some variations around it: a first (higher) during the morning (07.00-11.00 hours.) and a second (lower) in the afternoon (14.00-18.00 hours). Comparative data between the 'Chantransia' stage and the respective gametophyte for one Batrachospermum population revealed higher values (ca 2-times) in the latter, much lower than previously reported. The physiological role of the 'Chantransia' stage needs to be better analyzed.

Respostas fisiológicas de duas espécies de algas vermelhas continentais ao empobrecimento de fósforo e nitrogênio inorgânicos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Respostas de curto período das características fotossintéticas da alga vermelha Batrachospermum delicatulum a temperatura e irradiância

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Efeitos da irradiância e da composição espectral da luz sobre o estabelecimento e desenvolvimento de comunidades de macroalgas lóticas em substratos artificiais

Pós-graduação em Ciências Biológicas (Biologia Vegetal) - IBRC

Paleoambiente e diagênese da formação Itaituba, carbonífero da bacia do Amazonas, com base em testemunho de sondagem, região de Uruará, Pará

A Formação Itaituba de idade carbonífera representa a sedimentação carbonática de depósitos transgressivos do Grupo Tapajós da Bacia do Amazonas. A sucessão Itaituba é interpretada como depósitos de planície de maré mista, constituídos de calcários fossilíferos, dolomitos finos, arenitos finos a grossos e subordinadamente siltitos avermelhados, evaporitos e folhelhos negros. A análise de fácies e microfácies do testemunho de sondagem da região de Uruará, Estado do Pará, permitiu individualizar dezenove fácies agrupadas em cinco associações: planície de maré (AF1), canal de maré (AF2), laguna (AF3), barra bioclástica (AF4) e plataforma externa (AF5). AF1 é composta por arenito fino com rip-up clasts e gretas de contração, marga com grãos de quartzo e feldspato, dolomudstone laminado com grãos terrígenos e dolomito fino silicificado, com intercalação de argilito com grãos de quartzo disseminados, dolomitizado e localmente com sílica microcristalina. AF2 consiste em arenito médio a grosso com estratificação cruzada acanalada, recoberta por filmes pelíticos nos foresets, arenito muito fino a fino com acamamento wavy, siltito laminado com falhas sinsedimentares e acamamento convoluto. AF3 é constituída de siltito vermelho maciço, mudstone com fósseis, floatstone com braquiópodes e pirita disseminada e mudstone maciço com frequentes grãos de quartzo. AF4 e AF5 exibem abundantes bioclastos representados por espinhos e fragmentos de equinodermas, conchas, fragmentos e espinhos de braquiópodes, ostracodes, foraminíferos, algas vermelhas e conchas de bivalves. AF4 é formada por grainstone oolítico fossilífero e grainstone com terrígenos principalmente grãos de quartzo monocristalino e AF5 se compõe de wackestone fossilífero, wackestone com terrígenos e mudstone maciço com grãos de quartzo monocristalino. Subarcósios (AF1), arcósios (AF2) e arcósios líticos (AF2) são os tipos de arenitos da sucessão Itaituba e apresentam como principais constituintes grãos de quartzo monocristalino e policristalino, K-feldspato, plagioclásio, pirita, muscovita detrítica, fragmento de rocha pelítica, metamórfica e chert e raros bioclastos. O cimento é de calcita espática não ferrosa, óxido/hidróxido de ferro e sobrecrescimento de sílica. A porosidade é intergranular, móldica e às vezes alongada, sem permeabilidade perfazendo até 11% da rocha. Os processos diagenéticos dos arenitos são compactação física, sobrecrescimento de sílica, cimentação de calcita, formação de matriz diagenética, compactação química, substituição de grãos, autigênese de pirita, formação de óxido/hidróxido de ferro e alteração do plagioclásio. Os processos diagenéticos dos carbonatos são: micritização, neomorfismo, colomitização, fraturamento, compactação química, cimentação de calcita, dissolução secundária e autigênese de minerais. A sucessão da Formação Itaituba representa um sistema de laguna/planície de maré ligada a uma plataforma marinha carbonática. Planícies de maré desenvolveram-se nas margens das lagunas e eram periodicamente supridas por influxos de terrígenos finos (silte) que inibiam a precipitação carbonática. Barras bioclásticas eram cortadas por canais de maré (inlet) que conectavam a laguna com a plataforma rasa rica em organismos bentônicos.

The roles of environmental conditions and spatial factors in controlling stream macroalgal communities

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Grãos em carbonatos marinhos cretácicos da Bacia Potiguar: formações Ponta do Mel e Jandaíra

This work aims to identify and photograph grains that compose important Cretaceous carbonate units of the Potiguar Basin, represented by the Ponta do Mel and Jandaíra formations (Albian-Campanian). Petrographic investigation of thin sections was essential. The samples studied come from wells and surface samples from the collection UNESPetro – UNESP, Rio Claro. In the Ponta do Mel Formation, the grains consist of ooids, oncoids, peloids and bioclasts. Regarding to the identified bioclasts, the solenoporacean red algae, mollusks (bivalves and gastropods), echinoids, foraminifera, ostracods and worms were the dominant elements. In the Jandaíra Formation, the grains are composed by ooids, peloids and bioclasts, which are represented by green algae, mollusks (bivalves and gastropods), benthic foraminifera miliolids, worms, echinoderms and ostracods. The grains found in the Ponta do Mel Formation are somewhat similar to those found in the Jandaíra Formation, with the exception of calcareous algae. The subsurface material from the Ponta do Mel Formation is derived from the upper part of the unit, representing marine high-energy carbonates, which also contains ooids and Trocholina. The samples of Jandaíra Formation, collected in outcrops, often contain green algae, mollusks and miliolids, and come from inner shelf and lagoon facies previously described

Physiological performances of two populations of Compsopogon caeruleus (Rhodophyta) to inorganic nitrogen and phosphorus impoverishment

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estudo químico e biológico dos fungos endofíticos Microascus sp. e Nodulisporium sp. associados à alga vermelha Asparagopsis Taxiformis

Pós-graduação em Química - IQ

Microfacies and sequence stratigraphy of the Amapa Formation, Late Paleocene to Early Eocene, Foz do Amazonas Basin, Brazil

On the basis of thin-section studies of cuttings and a core from two wells in the Amapa Formation of the Foz do Amazonas Basin, five main microfacies have been recognized within three stratigraphic sequences deposited during the Late Paleocene to Early Eocene. The facies are: 1) Ranikothalia grainstone to packstone facies; 2) ooidal grainstone to packstone facies; 3) larger foraminiferal and red algal grainstone to packstone facies; 4) Amphistegina and Helicostegina packstone facies; and 5) green algal and small benthic foraminiferal grainstone to packstone facies, divisible locally into a green algal and the miliolid foraminiferal subfacies and a green algal and small rotaliine foraminiferal subfacies. The lowermost sequence (Si) was deposited in the Late Paleocene-Early Eocene (biozone LF1, equivalent to P3-P6?) and includes rudaceous grainstones and packstones with large specimens of Ranikothalia bermudezi representative of the mid- and inner ramp. The intermediate and uppermost sequences (S2 and S3) display well-developed lowstand deposits formed at the end of the Late Paleocene (upper biozone LF1) and beginning of the Early Eocene (biozone LF2) on the inner ramp (larger foraminiferal and red algal grainstone to packstone facies), in lagoons (green algal and small benthic foraminiferal facies) and as shoals (ooidal facies) or banks (Amphistegina and Helicostegina facies). Depth and oceanic influence were the main controls on the distribution of these microfacies. Stratal stacking patterns evident within these sequences may well have been related to sea level changes postulated for the Late Paleocene and Early Eocene. During this time, the Amapa Formation was dominated by cyclic sedimentation on a gently sloping ramp. Environmental and ecological stress brought about by sea level change at the end of the biozone LF1 led to the extinction of the larger foraminifera (Ranikothalia bermudezi). (c) 2009 Elsevier B.V. All rights reserved.

The Gracilariaceae Germplasm Bank of the University of So Paulo, Brazil-a DNA barcoding approach

The University of So Paulo Gracilariaceae Germplasm Bank has 50 strains collected mostly in Brazil, but also elsewhere in the world. This bank has been used as a source of material for research developed locally and abroad. With over 200 species, some of which have high economic value, the family Gracilariaceae has been extensively studied. Nonetheless, taxonomic problems still persist by the existence of cryptic species, phenotypic plasticity, and broad geographic distribution. In the case of algae kept in culture for long periods of time, the identification is even more problematic as a consequence of considerable morphological modification. Thus, the use of molecular markers has been shown to be an efficient tool to elucidate taxonomic issues in the group. In this work, we sequenced the 5'-end of the cox1 gene for 41 strains and the universal plastid amplicon (UPA) plastid region for 45 strains, covering all 50 strains in the bank. In addition, the rbcL for representatives of the cox1/UPA clusters was sequenced for 14 strains. The original species identification based on morphology was compared with the molecular data obtained in this work, resulting in the identification of 13 different species. Our analyses indicate that cox1 and UPA are suitable markers for the delineation of species of Gracilariales in the germplasm bank. The addition of DNA barcode tags to the samples in the Gracilariaceae germplasm bank and the molecular identification of the species will make this bank even more useful for future research as the species can be easily traced and confirmed.

Molecular support for the establishment of the new genus Laurenciella within the Laurencia complex (Ceramiales, Rhodophyta)

Currently, five genera are assigned to red seaweeds of the Laurencia complex worldwide: Chondrophycus, Laurencia s.s., Osmundea, Palisada and Yuzurua. The genera are segregated on the basis of morphological characters, especially the reproductive traits, and molecular sequences of the plastid-encoded gene rbcL. Four of the genera have been resolved as monophyletic, but not Laurencia s.s. In this study based on an rbcL gene phylogeny we show the presence of a sixth lineage within the Laurencia complex, viz., Laurencia marilzae plus two unidentified species of Laurencia from Brazil. The phylogenetic position of this group, combined with the high genetic divergence from Laurencia s.s. (8.2-11%), strongly support the establishment of a sixth genus for the complex, proposed here as Laurenciella gen. nov. This new taxon differs from Laurencia s.s. and from the other genera of the complex by molecular sequence data, but is indistinguishable from Laurencia s.s. by the usual morphological features.