Analysis of Puumala hantavirus in a bank vole population in northern Finland: evidence for co-circulation of two genetic lineages and frequent reassortment between strains

"In this study, for the first time, two distinct genetic lineages of Puumala virus (PUUV) were found within a small sampling area and within a single host genetic lineage (Ural mtDNA) at Pallasjarvi, northern Finland. Lung tissue samples of 171 bank voles (Myodes glareolus) trapped in September 1998 were screened for the presence of PUUV nucleocapsid antigen and 25 were found to be positive. Partial sequences of the PUUV small (S), medium (M) and large (L) genome segments were recovered from these samples using RT-PCR. Phylogenetic analysis revealed two genetic groups of PUUV sequences that belonged to the Finnish and north Scandinavian lineages. This presented a unique opportunity to study inter-lineage reassortment in PUUV; indeed, 32% of the studied bank voles appeared to carry reassortant virus genomes. Thus, the frequency of inter-lineage reassortment in PUUV was comparable to that of intra-lineage reassortment observed previously (Razzauti, M., Plyusnina, A., Henttonen, H. & Plyusnin, A. (2008). J Gen Virol 89, 1649-1660). Of six possible reassortant S/M/L combinations, only two were found at Pallasjarvi and, notably, in all reassortants, both S and L segments originated from the same genetic lineage, suggesting a non-random pattern for the reassortment. These findings are discussed in connection to PUUV evolution in Fermoscandia."

Corporate Governance in European Banks: Essays on Bank Ownership

Banks are important as they have a central role in the financial system, where funds are channelled either through financial intermediaries, such as banks, or through financial markets, hence promoting growth in any economy. Recently, we have been reminded of the drawbacks of the central role of banks. The current financial crisis, which started out as a sub-prime mortgage crisis in the US, has become a global financial crisis with substantial impact on the real economy in many countries. Some of the roots to the current financial crisis can be sought in the changing role of banks and in bank corporate governance. Moreover, the substantial revitalising measures taken have been justified by the central role of banks. Not only are banks important, they are also very special. The fact that banks are regulated in conjunction with greater opacity, make bank corporate governance different from corporate governance in non-bank companies. Surprisingly little is, however, known about bank corporate governance, in particularly, in a European setting. Hence, the objective of this doctoral thesis is to provide new insights in this research area by examining banks from 37 different European countries. Each of the three essays included in the doctoral thesis examines a particular aspect of bank corporate governance. In the first essay the interaction between the regulatory environment a bank operates in and its ownership structure is explored. Indicators of the severity of the moral hazard problem induced by the deposit insurance system and implicit too-big-to-fail government guarantee, particular features of deposit insurance systems as well as legal protection of shareholders, legal origin of a country and level of integration to the European community are used in the analysis. The empirical findings confirm previous findings on the link between legal protection of shareholders and ownership structure. Moreover, they show that differences in deposit insurance system features can explain some of the differences in ownership structure across European banks. In the second essay the impact of management and board ownership on the profitability of banks with different strategy is examined. The empirical findings suggest that the efficiency of these two particular corporate governance mechanisms varies with the characteristics of the agency problem faced by the bank. More specifically, management ownership is important in opaque non-traditional banks, whereas board ownership is important in traditional banks, where deposit insurance reduces the monitoring incentives of outsiders. The higher profitability does, however, go together with higher risk. In the third essay the profitability and risk of commercial, savings and cooperative banks are compared. The empirical findings suggest that distinct operational and ownership characteristics rather than only the mere fact that a bank is a commercial, savings or cooperative bank explain the profitability and risk differences. The main insight from the three essays is that a number of different aspects should be addressed simultaneously in order to give the complexity of bank corporate governance justice.

Bank Run Risk and Optimal Reserves

We characterize the optimal reserves, and the generated probability of a bank run, as a function of the penalty imposed by the central bank, the probability of depositors’ liquidity needs, and the return on outside investment opportunities.

Comparative study of filter-bank mean-energy distance for automated segmentation of speech signals

This paper describes a method of automated segmentation of speech assuming the signal is continuously time varying rather than the traditional short time stationary model. It has been shown that this representation gives comparable if not marginally better results than the other techniques for automated segmentation. A formulation of the 'Bach' (music semitonal) frequency scale filter-bank is proposed. A comparative study has been made of the performances using Mel, Bark and Bach scale filter banks considering this model. The preliminary results show up to 80 % matches within 20 ms of the manually segmented data, without any information of the content of the text and without any language dependence. 'Bach' filters are seen to marginally outperform the other filters.

Monetary policy rules and estimated reaction functions for the European Central Bank

This thesis studies the interest-rate policy of the ECB by estimating monetary policy rules using real-time data and central bank forecasts. The aim of the estimations is to try to characterize a decade of common monetary policy and to look at how different models perform at this task.The estimated rules include: contemporary Taylor rules, forward-looking Taylor rules, nonlinearrules and forecast-based rules. The nonlinear models allow for the possibility of zone-like preferences and an asymmetric response to key variables. The models therefore encompass the most popular sub-group of simple models used for policy analysis as well as the more unusual non-linear approach. In addition to the empirical work, this thesis also contains a more general discussion of monetary policy rules mostly from a New Keynesian perspective. This discussion includes an overview of some notable related studies, optimal policy, policy gradualism and several other related subjects. The regression estimations are performed with either least squares or the generalized method of moments depending on the requirements of the estimations. The estimations use data from both the Euro Area Real-Time Database and the central bank forecasts published in ECB Monthly Bulletins. These data sources represent some of the best data that is available for this kind of analysis. The main results of this thesis are that forward-looking behavior appears highly prevalent, but that standard forward-looking Taylor rules offer only ambivalent results with regard to inflation. Nonlinear models are shown to work, but on the other hand do not have a strong rationale over a simpler linear formulation. However, the forecasts appear to be highly useful in characterizing policy and may offer the most accurate depiction of a predominantly forward-looking central bank. In particular the inflation response appears much stronger while the output response becomes highly forward-looking as well.

PDB Goodies - a web-based GUI to manipulate the Protein Data Bank file

PDB Goodies is a web-based graphical user interface (GUI) to manipulate the Protein Data Bank file containing the three-dimensional atomic coordinates of protein structures. The program also allows users to save the manipulated three-dimensional atomic coordinate file on their local client system. These fragments are used in various stages of structure elucidation and analysis. This software is incorporated with all the three-dimensional protein structures available in the Protein Data Bank, which presently holds approximately 18 000 structures. In addition, this program works on a three-dimensional atomic coordinate file (Protein Data Bank format) uploaded from the client machine. The program is written using CGI/PERL scripts and is platform independent. The program PDB Goodies can be accessed over the World Wide Web at http:// 144.16.71.11/pdbgoodies/.

Design and Application of a new Multiscale Multidirectional Non-subsampled Filter Bank

We propose a new method for design of computationally efficient nonsubsampled multiscale multidirectional filter bank with perfect reconstruction (PR). This filter bank is composed of two nonsubsampled filter banks, for multiscale decomposition and for directional expansion. For multiscale decomposition, we transform the 1-D equivalent subband filters directly into 2-D equivalent subband filters. The computational cost is considerably reduced by avoiding the computation of 2-D convolutions. The multidirectional decomposition utilizes fan filters. A new method for design of 2-D zero phase FIR fan filter transformation function is developed. This method also aids the transformation of a 1-D filter bank to a 2-D multidirectional filter bank. The potential application of the proposed filter bank is illustrated by comparing the image denoising performance of the proposed filter bank with other design method that exist in available literature.

Iterated stochastic filters with additive updates for dynamic system identification: Annealing-type iterations and the filter bank

A nonlinear stochastic filtering scheme based on a Gaussian sum representation of the filtering density and an annealing-type iterative update, which is additive and uses an artificial diffusion parameter, is proposed. The additive nature of the update relieves the problem of weight collapse often encountered with filters employing weighted particle based empirical approximation to the filtering density. The proposed Monte Carlo filter bank conforms in structure to the parent nonlinear filtering (Kushner-Stratonovich) equation and possesses excellent mixing properties enabling adequate exploration of the phase space of the state vector. The performance of the filter bank, presently assessed against a few carefully chosen numerical examples, provide ample evidence of its remarkable performance in terms of filter convergence and estimation accuracy vis-a-vis most other competing filters especially in higher dimensional dynamic system identification problems including cases that may demand estimating relatively minor variations in the parameter values from their reference states. (C) 2014 Elsevier Ltd. All rights reserved.

Evaluacion de alternativas quimicas y botanicas para el manejo del acaro blanco (Poliphagotarsonemus latus, Bank) en chiltoma (Capsicum annum L.) Tisma, Masaya

El ácaro blanco ( Poliphagotarsonemus latus, Bank) se ha convertido en un severo proble ma fitosanitario y socioeconómico para los productores de chiltoma ( Capsicum annum L.) del municipio de Tisma, Masaya. Esta plaga ha provocado grandes e importantes pérdidas económicas al reducir los rendimientos hasta en un 90%, disminuyendo así la calid ad y aumentando los costos de producción de la chiltoma. Ante la problemática existente en el municipio de Tisma y con el objetivo de encontrar una solución, se realizó un estudio en el periodo comprendido entre el mes de Agosto del 2007 a Enero del 2008, donde se evaluaron cuatro alternativas químicas y una botánica para el manejo del acaro blanco. Las alternativas evaluadas fueron: Oberón, Caldo sulfacálcico, Nim, Azufre y Vertimec en comparación con el testigo (aplicación de agua). Las variables evaluada s en el estudio fueron: Identificación del acaro blanco y sus daños en las plantas de chiltoma, Acaro blanco ( Poliphagotarsonemus latus, Bank ) por planta, Incidencia y Severidad del daño de acaro blanco, rendimiento en (kg ha - 1 ), altura de la planta (cm). Para decidir el momento de las aplicaciones de los productos se realizaron monitoreos semanales con una lupa de 16x tomando como nivel crítico un acaro por hoja tierna. Los resultados obtenidos en el estudio indican que el tratamiento Oberón fue el que pr esentó las poblaciones más bajas del acaro blanco, además de ser el más efectivo en el manejo, ya que las plantas tratadas con este producto presentaron el porcentaje de severidad más bajo en comparación con los demás tratamientos en estudio. El análisis e conómico realizado en este estudio determinó que el tratamiento Oberón fue el que presentó el mayor rendimiento, menor costo variable y fue el que obtuvo el mayor beneficio neto en comparación con los demás tratamientos en estudio

Evaluación de alternativas botánicas y químicas para el manejo del acaro blanco (Poliphagotarsonemus latus, Bank)(Acarina: Tarsonemidae) e insectos plagas en el cultivo de chiltoma (Capsicum annuum L.) Tisma, Masaya

El ácaro blanco (Poliphagotarsonemus latus , Bank), es uno de los problemas fitosanitarios más severos para los productores de chiltoma ( Capsicum annuum , L.) en el municipio de Tisma, Masaya. Esta plaga ha provocado importantes pérdidas económicas, disminuyendo así la calidad de los frutos y aumentando los costos de producción. En vista de este problema en el municipio de Tisma, se realizó un estudio en el periodo comprendido entre los meses de Septiembre a Diciembre del año 2009, donde se evaluaron algunas alternativas botánicas y químicas para el manejo del acaro blanco. Las alternativas evaluadas fueron: Oberon, Chile+Ajo+Jabón, Rienda, Vertimec, Sulfato de Amonio. Los resultados obtenidos en el estudio indican que el tratamiento Rienda fue el tratamiento con mejor control en el manejo del acaro blanco (39%) comparado con el testigo, ya que las plantas tratadas con este producto presentaron el menor número de ácaros por planta (2.73), menor porcentaje de incidencia (33%) y severidad (19%) en comparación con los demás tratamientos evaluados. Los tratamientos que obtuvieron los mejores rendimientos en k/Ha fueron Vertimec con (12237) y Oberon con (10944), Sulfato de Amonio obtuvo (9353). En el análisis de tasa de retorno marginal el tratamiento Vertimec es el que obtuvo mejor resultado con 659.53%.

Evaluación de productos botánicos y químicos para el manejo del acaro blanco (Poliphagotarsonemus latus, Bank) y otras plagas claves en el cultivo de chiltoma (Capsicum annuum L.) y su efecto en los enemigos naturales en Tisma, Masaya

El ácaro blanco ( Poliphagotarsonemus latus , Bank), es uno de los problemas fitosanitarios más severos para los productores de chiltoma ( Capsicum annuum , L.) en el municipio de Tisma, Masaya. Esta plaga ha ocasionado importantes pérdidas económicas, ya que reduce los rendimientos, disminuyendo así la calidad de los frutos y aumenta los costos de producción. En vista de este problema en el municipio de Tisma, se realizó un estudio con en el objetivo de evaluar productos botánicos y químicos para el manejo del ácaro blanco en chiltoma en el período comprendido entre los meses de Julio a Octubre del año 2009, donde se evaluaron algunos productos botánicos y químicos para el manejo del ácaro blanco. Los productos evaluados fueron: Chile + Jabón, Oberón, Neem, Vertimec, Ajo + jabón en comparación con el Testigo. Las variables evaluadas fueron: Fluctuación poblacional del ácaro blanco , Incidencia y Severidad de daño de ácaro por planta, rendimiento (Kg/ha-1) y fluctuación poblacional de organismos plagas y benéficos asociados al cultivo de la chiltoma como: Mosca blanca ( Bemisia tabaci), Áfidos (Aphis gossypii ), Minador de la hoja ( Liriomyza sp ), Mariquitas ( Coccinella sp ), Hormigas ( Atta sp ) y Arañas. Los resultados obtenidos en el estudio indican que el tratamiento Oberón presento la menor fluctuación poblacional de ácaro blanco seguido por los tratamientos Vertimec y Chile + jabón, el tratamiento Oberón fue el tratamiento con menor incidencia y severidad del daño de ácaro. El análisis económico realizado en este estudio determinó que el tratamiento Oberón fue el que presentó el mayor rendimiento y obtuvo el mayor beneficio neto, por el contrario el tratamiento que presentó los mayores costos variables fue el tratamiento Vertimec, seguido por el Neem. Además en este estudio se muestrearon las fluctuaciones poblacionales de otros organismos plagas y benéficos relacionados al cultivo de la chiltoma, donde resultados de este estudio demuestran que los productos utilizados para el manejo del ácaro blanco no tienen ningún efecto en las poblaciones de estos insectos.

Plaguicidas botánicos y químicos para el control del ácaro blanco (Polyphagotarsonemus latus Bank) (Acarina: Tarsonemidae) en chiltoma (Capsicum annuum L.), Tisma, Masaya

El ácaro blanco (Polyphagotarsonemus latus Bank), es uno de los problemas fitosanitarios más severos para los productores de chiltoma (Capsicum annuum L.) en el municipio de Tisma, Masaya.Esta plaga ha ocasionado importantes pérdidas económicas, ya que reduce los rendimientos, disminuye la calidad de los frutos y aumenta los costos de producción. Por esta razón, en el municipio de Tisma, se realizó este estudio con en el objetivo de evaluar productos botánicos y químicos para el manejo del ácaro blanco en el cultivo de chiltoma durante el período de julio a octubre del año 2009. Los productos evaluados fueron: Chile + Jabón, Oberón, Neem, Vertimec, Ajo + jabón en comparación con el testigo. Las variables evaluadas fueron: fluctuación poblacional del ácaro blanco, incidencia y severidad de daño de ácaro por planta, y rendimiento en kg ha-1. Los resultados obtenidos indican que el tratamiento Oberón presentó la menor fluctuación poblacional de ácaro blanco, seguido por los tratamientos Vertimec y Chile + jabón, el tratamiento Oberón fue el tratamiento con menor incidencia y severidad del daño causado por el ácaro. El análisis económico realizado en este estudio determinó que el tratamiento Oberón fue el que presentó mayor rendimiento y beneficio neto, por el contrario el tratamiento que presentó los mayores costos variables fue el tratamiento Vertimec, seguido por el Neem.

Manejo del complejo plagas raspadores chupadores ácaro blanco (Polyphagotarsonemus latus, Bank) y trips (Frankliniella occidentalis, Pergande.) en chiltoma (Capsicum annum L.) en campo abierto, Managua, Nicaragua 2014

El ácaro blanco ( Polyphagotarsonemus latus, Bank ) y Trips ( Frankliniella occidentalis , Pergande ) se han convertido en problemas fitosanitarios importantes en el cultivo de Chiltoma ( Capsicum annuum , L.), e stas plagas han provocado importantes pérdidas e conómicas, disminuyendo así la calidad de los frutos y aumentando los costos de producción. Se realizó un e studio entre los meses de octubre del 2014 y enero del 2015 en la finca el plantel de la Universidad Nacional Agraria, con el propósito de encontrar alternativas que den solución al problema. Se utilizó un diseño bifactorial en parcelas divididas con un arreglo en BCA. El factor cobertura plástica mulch con dos niveles (con y sin cobert ura) y el factor tipo de manejo con cuatro niveles (Químico sintético, Entomopatógenos , Químico sintético + Entomopatógenos y testigo) para un total de ocho tratamientos con tres repeticiones. Se evaluó el uso de plástico mulch en la parcela grande y el tipo de manejo en la parcela pequeña. El tipo de manejo Químico sintético (Spiromesifen, Imidacloprid, Spinosad, Muralla delt a y Abamectina), manejo Entomopatógenos ( Beauveria bassiana y Metarhizium anisopliae ) y un manejo con productos Químico sintético + Entomopatógenos . Los resultados demostraron diferencias significativas en la interacción de los tratamientos para la variab le número de ácaros por planta . De acuerdo a la prueba de Tuckey aplicada para el factor manejo , los tratamientos evaluados se ubican en la misma categoría estadística a excepción del testigo . Los mismos factores y sus respectivos niveles evaluados , no t uvieron efecto sobre la variable número de Trips por planta. En el análisis de rendimiento mostró diferencias significativas en el factor cobertura ( α= 0.00013336 ) ; el uso de plástico mulch obtuvo mayor rendimiento con 7,405 kg/ha . Segú n la tasa de retorno marginal , el tratamiento más rentable fue con cobertura testigo ya que presentó una ta sa de retorno marginal de 743.82 %

Cruise Report: Summer 2008 Ecological Assessment of Stellwagen Bank National Marine Sanctuary NOAA Ship NANCY FOSTER NF-08-09-CCEHBR (June 14-June 21, 2008)

Summary: This cruise report is a summary of a field survey conducted within the Stellwagen Bank National Marine Sanctuary (SBNMS), located between Cape Cod and Cape Ann at the mouth of Massachusetts Bay. The survey was conducted June 14 – June 21, 2008 on NOAA Ship NANCY FOSTER Cruise NF-08-09-CCEHBR. Multiple indicators of ecological condition and human dimensions were sampled synoptically at each of 30 stations throughout SBNMS using a random probabilistic sampling design. Samples were collected for the analysis of benthic community structure and composition; concentrations of chemical contaminants (metals, pesticides, PAHs, PCBs, PBDEs) in sediments and target demersal biota; nutrient and chlorophyll levels in the water column; and other basic habitat characteristics such as depth, salinity, temperature, dissolved oxygen, turbidity, pH, sediment grain size, and organic carbon content. In addition to the fish samples that were collected for analysis of chemical contaminants relative to human-health consumption limits, other human-dimension indicators were sampled as well including presence or absence of fishing gear, vessels, surface trash, marine mammals, and noxious sediment odors. The overall purpose of the survey was to collect data to assess the status of ecosystem condition and potential stressor impacts throughout SBNMS, based on these various indicators and corresponding management thresholds, and to provide this information as a baseline for determining how such conditions may be changing with time. While sample analysis is still ongoing a few preliminary results and observations are reported here. A final report will be completed once all data have been processed. The results are anticipated to be of value in supporting goals of the SBNMS and National Marine Sanctuary Program aimed at the characterization, protection, and management of sanctuary resources (pursuant to the National Marine Sanctuary Reauthorization Act) as well as a new priority of NCCOS and NOAA to apply Ecosystem Based approaches to the Management of coastal resources (EBM) through Integrated Ecosystem Assessments (IEAs) conducted in various coastal regions of the U.S. including the Northeast Atlantic continental shelf. This was a multi-disciplinary partnership effort made possible by scientists from the following organizations:  NOAA, National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Environmental Health and Biomolecular Research (CCEHBR), Charleston, SC.  U.S. Environmental Protection Agency (EPA), National Health and Environmental Effects Research Laboratory (NHEERL), Atlantic Ecology Division (GED), Narragansett, RI.  U.S. Environmental Protection Agency (EPA), National Health and Environmental Effects Research Laboratory (NHEERL), Gulf Ecology Division (GED), Gulf Breeze, FL.  U.S. Geological Survey (USGS), National Wetlands Research Center, Gulf Breeze Project Office, Gulf Breeze, FL.  NOAA, Office of Marine and Aviation Operations (OMAO), NOAA ship Nancy Foster. (31pp) (PDF contains 58 pages)