Two distinct arabinofuranosidases contribute to arabino-oligosaccharide degradation in Bacillus subtilis.

Microbiology 154 (2008) 2719-2729

Characterization of the abn2(yxiA) encoding a Bacillus subtilis GH43 arabinanase, Abn2, and its role in arabino-polysaccharides degradation.

Journal of Bacteriology (Junho 2008) 4272-4280

Engineering a commercial cold-adapted xylanase for improved low pH stability

Dissertação de mestrado em Genética Molecular

Estudio de Fosfatasa Alcalina Placentaria en un modelo que reproduce in vitro la infección placentaria humana con Trypanosoma cruzi

La enfermedad de Chagas Mazza, endémica en América Latina, afecta a 20 millones de personas y 50.000 muertes anuales están asociadas. La transmisión connatal de la enfermedad está relacionada con nacimientos prematuros, abortos, placentitis y con la presencia de diversas patologías del recién nacido. La actividad de la fosfatasa alcalina humana (EC 3.1.3.1) ha sido utilizada con fines diagnósticos por más de 60 años. Un aumento en el nivel de Fosfatasa Alcalina es observado en la segunda mitad del embarazo en función del tiempo de gestación y es un índice de la actividad placentaria. Messer demostró que una disminución en la actividad específica de esta enzima es un signo de disfunción placentaria, siendo de utilidad en el diagnóstico clínico de diversas patologías. Se ha demostrado disminución de la enzima en placentas preeclámpsicas. Mediante microscopía electrónica se detectó una disminución de la actividad de la fosfatasa alcalina placentaria en el sinciciotrofoblasto en placentas de madres chagásicas. En una reproducción de la infección de placenta humana in vitro se observa un significativo descenso de la actividad de fosfatasa alcalina en el medio de cultivo, lo cual sugiere que el T. cruzi produciría en el plasma de la embarazada chagásica un efecto análogo. Trabajos anteriores permiten postular que la actividad de la fosfatasa alcalina placentaria disminuye en el suero de pacientes chagásicos entre las 36 a 40 semanas de gestación y que esta disminución se asocia con el nacimiento de niños chagásicos. Se ha sugerido además que la fosfatasa alcalina placentaria es un receptor de IgG y que el transporte transplacentario de la IgG de la madre al feto dependería del genotipo fetal de fosfatasa alcalina placentaria. Estos hechos permiten suponer que en la interacción placenta- T. cruzi la actividad de fosfatasa alcalina placentaria jugaría un rol importante pues podría condicionar según su polimorfismo la posibilidad de una determinada incidencia de la infección fetal. (...) No existen estudios analíticos ni sistemáticos de la actividad de fosfatasa alcalina placentaria en la enfermedad de Chagas en el plasma y placenta durante el transcurso del embarazo que permitan dilucidar el rol de la enzima en la interacción placenta-parásito-feto a través de las formas que se le atribuyen a la enzima en condiciones normales. Teniendo en cuenta estos antecedentes, en el presente proyecto se proponen: Objetivo General Caracterizar la fosfatasa alcalina placentaria de las placentas normales cultivadas e infectadas con T. cruzi y del medio de cultivo en la infección in vitro con el objeto de dilucidar los posibles mecanismos de la infección placentaria en la enfermedad de Chagas congénita. Objetivos específicos: 1- Analizar los cambios de la actividad de fosfatasa alcalina placentaria en la placenta cultivada con Trypanosoma cruzi mediante análisis enzimático, electroforético e inmunocitoquímico. 2- Correlacionar las modificaciones bioquímicas de la fosfatasa alcalina placentaria, mediante el análisis de captación de IgG, en el sistema in vitro. 3- Analizar las propiedades bioquímicas de la fosfatasa alcalina placentaria en vellosidades cultivadas con Trypanosoma cruzi y corroborarla con la actividad de la enzime en cultivo con neuraminidasa o fosfolipasa sin T. cruzi.

Purification and characterization of (Na+ + K+)-ATPase from toad kidney

This report describes the partial purification and the characteristics of (Na+ + K+)-ATPase (ATP phosphohydrolase, EC 3.6.1.3) from an amphibian source. Toad kidney microsomes were solubilized with sodium deoxycholate and further purified by sodium dodecyl sulphate treatment and sucrose gradient centrifugation, according to the methods described by Lane et al. [(1973) J. Biol. Chem. 248, 7197--7200], Jørgensen [(1974) Biochim. Biophys. Acta 356, 36--52] and Hayashi et al. [(1977) Biochim. Biophys. Acta 482, 185--196]. (Na+ + K+)-ATPase preparations with specific activities up to 1000 mumol Pi/mg protein per h were obtained. Mg2+-ATPase only accounted for about 2% of the total ATPase activity. Sodium dodecyl sulphate-polyacrylamide gel electrophoresis revealed three major protein bands with molecular weights of 116 000, 62 000 and 26 000. The 116 000 dalton protein was phosphorylated by [gamma-32P]ATP in the presence of sodium but not in the presence of potassium. The 62 000 dalton component stained for glycoproteins. The Km for ATP was 0.40 mM, for Na+ 12.29 mM and for K+ 1.14 mM. The Ki for ouabain was 35 micron. Temperature activation curves showed two activity peaks at 37 degrees C and at 50 degrees C. The break in the Arrhenius plot of activity versus temperature appeared at 15 degrees C.

The Bacillus subtilis Gne (GneA, GalE) protein can catalyse UDP-glucose as well as UDP-N-acetylglucosamine 4-epimerisation.

Mutations in the Bacillus subtilis gene that affect the activity of the uridine diphosphate (UDP)-N-acetylglucosamine (GlcNAc) 4-epimerase (EC 5.1.3.7) were shown to map to galE, the structural gene of the UDP-glucose (Glc) 4-epimerase (EC 5.1.3.2). This genetic evidence that the same enzyme can catalyse the epimerisation of hexoses as well as of their N-acetylated forms is confirmed by in vitro assays with purified enzyme. It appears that in B. subtilis, Gne (GneA, GalE) is involved in two distinct and essential functions, i.e., cell detoxification under certain growth conditions and the biosynthesis of anionic cell wall polymers. We discuss the evidence that such enzymes capable of utilizing both UDP-hexoses and UDP-N-acetylhexosamines are present in other organisms.

Purification and functional reconstitution of the tonoplast pyrophosphate-dependent proton pump fron Rubus hispidus cell cultures.

The hydrolytic subunit of the H+-translocating inorganic pyrophosphatase (V-PPase EC 3.6.1.1.) prepared from Rubus hispidus cell cultures has been purified from tonoplast-enriched membranes and analysed by SDS-polyacrylamide gel electrophoresis, Only one polypeptide of M(r) 70 000 was recovered with the V-PPase activity after solubilization in the presence of Triton X-100, purification by gel filtration (Superose) and anion exchange (Mono Q) chromatography. This polypeptide strongly cross-reacted with an antibody raised against the V-PPase from Vigna radiata. The tonoplast-enriched fraction was also used to solubilize and reconstitute the-V-PPase. The proteoliposomes showing a PPi-dependent proton transport activity were purified by gel filtration (Superose) and analysed by SDS-polyacrylamide gel electrophoresis. Only one polypeptide of M(r) 70 000 was recovered with the proton-pumping activity. All these data suggest that the native V-PPase from Rubus is composed of a single kind of polypeptide with an M(r) of 70 000 and representing the catalytic subunit.

Matéria seca, relação C/N e acúmulo de nitrogênio, fósforo e potássio em misturas de plantas de cobertura de solo

O interesse em consorciar plantas de cobertura no inverno tem aumentado nos últimos anos na região Sul do Brasil. Por ser uma prática agrícola recente, é importante avaliar a produção de matéria seca e o acúmulo de nutrientes de espécies consorciadas ou cultivadas isoladamente. Realizou-se um experimento no período de 1998 a 2000, na UFSM (RS), num Argissolo Vermelho distrófico arênico, consorciando-se aveia preta (Avena strigosa Schieb) + ervilhaca comum (Vicia sativa L.) e aveia preta + nabo forrageiro (Raphanus sativus L. var. oleiferus Metzg.) em diferentes quantidades de sementes. Os nove tratamentos foram: (1) 100 % aveia preta (AP); (2) 100 % ervilhaca comum (EC); (3) 100 % nabo forrageiro (NF); (4) 15 % AP + 85 % EC; (5) 30 % AP + 70 % EC; (6) 45 % AP + 55 % EC; (7) 15 % AP + 85 % NF; (8) 30 % AP + 70 % NF, e (9) pousio invernal (vegetação espontânea). Avaliou-se a produção de matéria seca (MS), bem como as concentrações de nitrogênio, fósforo, potássio e carbono do tecido vegetal. O cultivo consorciado de plantas de cobertura proporcionou produção de matéria seca estatisticamente semelhante àquela da aveia e do nabo em culturas isoladas e superior à da ervilhaca. O acúmulo de N na fitomassa dos tratamentos envolvendo consórcio de aveia + ervilhaca não diferiu daquele da ervilhaca isolada e, na média dos três anos, foi superior ao da aveia isolada em 32 kg ha-1 de N. Consorciando aveia + ervilhaca, houve um aumento médio de 67 % na relação C/N da fitomassa, em relação à ervilhaca. As plantas de cobertura proporcionaram maior produção de MS e foram mais eficientes no acúmulo de N, P e K do que a vegetação espontânea do pousio invernal. Os resultados indicaram que o consórcio de aveia + ervilhaca e de aveia + nabo no outono/inverno proporcionou maior produção de biomassa do que o cultivo isolado de cada espécie, pois combinou a elevada capacidade de produção de fitomassa de aveia e nabo com a fixação de N2 atmosférico da ervilhaca.

Drug metabolism for the perplexed medicinal chemist.

Two related and significant issues may elicit perplexity in medicinal chemists and are discussed here. First, a broad presentation of the pharmacological and toxicological consequences of drug metabolism should justify the significance of drug metabolism and serve as an incentive to further study. When comparing the pharmacological activities of a drug and its metabolite(s), a continuum is found which ranges from soft drugs (no active metabolites) to prodrugs (inactive per se, as illustrated here with clopidogrel and prasugrel). Innumerable intermediate cases document drugs whose activity is shared by one or more metabolites, as exemplified with tamoxifen. The toxicological consequences of metabolism at the molecular, macromolecular, and macroscopic levels are manyfold. A brief overview is offered together with a summary of the reactions of toxification and detoxification of the antiepileptic valproic acid. The second issue discussed in the review is a comparison of the relative significance of cytochromes P450 and other oxidoreductases (EC 1), hydrolases (EC 3), and transferases (EC 2) in drug metabolism, based on a 'guesstimate' of the number of drug metabolites that are known to be produced by them. The conclusion is that oxidoreductases are the main enzymes responsible for the formation of toxic or active metabolites, whereas transferases play the major role in producing inactive and nontoxic metabolites.

Structural organization of alpha-subunit from purified and microsomal toad kidney (Na+ + K+)-ATPase as assessed by controlled trypsinolysis

The membrane organization of the alpha-subunit of purified (Na+ + K+)-ATPase ((Na+ + K+)-dependent adenosine triphosphate phosphorylase, EC 3.6.1.3) and of the microsomal enzyme of the kidney of the toad Bufo marinus was compared by using controlled trypsinolysis. With both enzyme preparations, digestions performed in the presence of Na+ yielded a 73 kDa fragment and in the presence of K+ a 56 kDa, a 40 kDa and small amounts of a 83 kDa fragment from the 96 kDa alpha-subunit. In contrast to mammalian preparations (Jørgensen, P.L. (1975) Biochim. Biophys. Acta 401, 399-415), trypsinolysis of the purified amphibian enzyme led to a biphasic loss of (Na+ + K+)-ATPase activity in the presence of both Na+ and K+. These data could be correlated with an early rapid cleavage of 3 kDa from the alpha-subunit in both ionic conditions and a slower degradation of the remaining 93 kDa polypeptide. On the other hand, in the microsomal enzyme, a 3 kDa shift of the alpha-subunit could only be produced in the presence of Na+. Our data indicate that (1) purification of the amphibian enzyme with detergent does not influence the overall topology of the alpha-subunit but produces a distinct structural alteration of its N-terminus and (2) the amphibian kidney enzyme responds to cations with similar conformational transitions as the mammalian kidney enzyme. In addition, anti alpha-serum used on digested enzyme samples revealed on immunoblots that the 40 kDa fragment was better recognized than the 56 kDa fragment. It is concluded that the NH2-terminal of the alpha-subunit contains more antigenic sites than the COOH-terminal domain in agreement with the results of Farley et al. (Farley, R.A., Ochoa, G.T. and Kudrow, A. (1986) Am. J. Physiol. 250, C896-C906).

Esterification of oleic acid catalayzed by an Aspergillus niger strain. Influence of water activity and alcohol concentration

Effects of water activity and 1-propanol concentration on synthesis of propyl oleate from oleic acid using Aspergillus niger cell-bound lipases in isooctane are described. A. niger produces lipases (EC 3.1.1.3) which partly bind to the mycelium during growth. Ester production was monitored for 72 hours at different 1-propanol concentrations and water activities. Aliquots were sequentially withdrawn and propyl esters were quantified using GC and methyl palmitate as an internal standard. In all assayed conditions A. niger cell-bound lipases catalysed propyl oleate synthesis, but at different degrees.

Atividade de enzimas relacionadas com a mobilização de carboidratos durante a dormência da nogueira (Juglans Regia)

A brotação da nogueira é dependente da mobilização de carboidratos do lenho para as gemas localizadas na porção superior dos ramos. O objetivo do trabalho foi contribuir para o entendimento do mecanismo de brotação acrótona da nogueira, em clima temperado, através da mensuração da atividade da ±-amilase (EC 3.2.1.1) e sacarose fosfato sintase (SPS - EC 2.4.1.14) relacionadas com a mobilização de carboidratos, durante o período de dormência. Para cada coleta, foram amostrados cinco ramos do ano, durante os meses de setembro a março. Em abril, próximo à retomada do crescimento ativo, foram feitas três amostragens. As partes apical, subapical e da base dos ramos foram separadas em casca, lenho (xilema) e gemas. O tempo médio de brotação (TMB) em condições controladas (25ºC), a umidade ponderal e a atividade das enzimas acima relacionadas foram determinadas. Os resultados obtidos reforçam a teoria de que o gradiente de brotação na nogueira se desenvolve durante a ecodormência e apresenta uma relação de dependência com a atividade da á-amilase; não está evidente a relação da atividade da SPS com a evolução do crescimento das gemas, durante a ecodormência.

Características agronômicas de seis genótipos de maracujazeiro-azedo cultivados no Distrito Federal

Este trabalho teve como objetivo avaliar as características agronômicas de seis genótipos de maracujazeiro-azedo cultivados no Distrito Federal. O experimento foi desenvolvido na área experimental da Fazenda Água Limpa da Universidade de Brasília, no DF. Utilizou-se o delineamento em blocos casualizados, com quatro repetições, seis tratamentos e sete plantas por parcela. Foram avaliados os genótipos: Rubi Gigante, EC-3-0, EC-L-7, RC-3, Redondão e Gigante Amarelo. Os parâmetros analisados, durante seis meses (17 colheitas), foram: produtividade total estimada, quantidade de frutos e coloração da casca. O genótipo Rubi Gigante teve a maior produtividade (16,69 t/ha-1), enquanto o RC-3 a menor (2,92 t/ha-1). Foram observados resultados semelhantes quanto às variáveis: produtividade total e quantidade de frutos de tamanho: primeira, 1B e 1A em relação aos seis genótipos. Não houve diferença significativa a 5%, pelo teste de Tukey, para: % de frutos de coloração amarela, rosa e roxa; massa fresca de frutos amarelos e rosas; quantidade de frutos rosas e roxos, e também quantidade de frutos de tamanho 2A e 3A em relação a todos os genótipos avaliados. Os genótipos Rubi Gigante, Redondão, EC-3-0 e EC-L-7 podem ser recomendados para o cultivo no DF e região geoeconômica, se confirmarem a superioridade quando avaliados por um maior período e em diferentes condições ambientais.

Soybean (Glycine max. L.) and bacteroid glyoxylate cycle activities during nodular senescence.

Soybean (Glycine max. L.) nodular senescence results in the dismantling of the peribacteroid membrane (PBM) and in an increase of soybean isocitrate lyase (ICL; EC 4.1.3.1) and malate synthase (MS; EC 4.1.3.2) mRNA and protein levels. This suggests that in senescing soybean nodular cells, the specific glyoxylate cycle enzyme activities might be induced to reallocate carbon obtained from the PBM degradation. In order to evaluate as well the carbon metabolism of the nitrogen-fixing Bradyrhizobium japonicum endosymbiotic bacteroids during nodular senescence, their glyoxylate cycle activities were also investigated. To this end, partial DNA sequences were isolated from their icl and ms genes, but the corresponding mRNAs were not detected in the microorganisms. It was also observed that the bacteroid ICL and MS activities were negligible during nodular senescence. This suggests that glyoxylate cycle activities are not reinitiated in the bacteroids under these physiological conditions. In case the microorganisms nevertheless feed on the PBM degradation products, this might occur via the citric acid cycle exclusively.

Soybean (Glycine max. L.) and bacteroid glyoxylate cycle activities during nodular senescence

Soybean (Glycine max. L.) nodular senescence results in the dismantling of the peribacteroid membrane (PBM) and in an increase of soybean isocitrate lyase (ICL; EC 4.1.3.1) and malate synthase (MS; EC 4.1.3.2) mRNA and protein levels. This suggests that in senescing soybean nodular cells, the specific glyoxylate cycle enzyme activities might be induced to reallocate carbon obtained from the PBM degradation. In order to evaluate as well the carbon metabolism of the nitrogen-fixing Bradyrhizobium japonicum endosymbiotic bacteroids during nodular senescence, their glyoxylate cycle activities were also investigated. To this end, partial DNA sequences were isolated from their icl and ms genes, but the corresponding mRNAs were not detected in the microorganisms. It was also observed that the bacteroid ICL and MS activities were negligible during nodular senescence. This suggests that glyoxylate cycle activities are not reinitiated in the bacteroids under these physiological conditions. In case the microorganisms nevertheless feed on the PBM degradation products, this might occur via the citric acid cycle exclusively.