Structural Integrity of the Greek Key Motif in beta gamma-Crystallins Is Vital for Central Eye Lens Transparency

Background: We highlight an unrecognized physiological role for the Greek key motif, an evolutionarily conserved super-secondary structural topology of the beta gamma-crystallins. These proteins constitute the bulk of the human eye lens, packed at very high concentrations in a compact, globular, short-range order, generating transparency. Congenital cataract (affecting 400,000 newborns yearly worldwide), associated with 54 mutations in beta gamma-crystallins, occurs in two major phenotypes nuclear cataract, which blocks the central visual axis, hampering the development of the growing eye and demanding earliest intervention, and the milder peripheral progressive cataract where surgery can wait. In order to understand this phenotypic dichotomy at the molecular level, we have studied the structural and aggregation features of representative mutations. Methods: Wild type and several representative mutant proteins were cloned, expressed and purified and their secondary and tertiary structural details, as well as structural stability, were compared in solution, using spectroscopy. Their tendencies to aggregate in vitro and in cellulo were also compared. In addition, we analyzed their structural differences by molecular modeling in silico. Results: Based on their properties, mutants are seen to fall into two classes. Mutants A36P, L45PL54P, R140X, and G165fs display lowered solubility and structural stability, expose several buried residues to the surface, aggregate in vitro and in cellulo, and disturb/distort the Greek key motif. And they are associated with nuclear cataract. In contrast, mutants P24T and R77S, associated with peripheral cataract, behave quite similar to the wild type molecule, and do not affect the Greek key topology. Conclusion: When a mutation distorts even one of the four Greek key motifs, the protein readily self-aggregates and precipitates, consistent with the phenotype of nuclear cataract, while mutations not affecting the motif display `native state aggregation', leading to peripheral cataract, thus offering a protein structural rationale for the cataract phenotypic dichotomy ``distort motif, lose central vision''.

Clemaps: Multiple Alignment Of Protein Structures Based On Conformational Letters

CLEMAPS is a tool for multiple alignment of protein structures. It distinguishes itself from other existing algorithms for multiple structure alignment by the use of conformational letters, which are discretized states of 3D segmental structural states. A letter corresponds to a cluster of combinations of three angles formed by C-alpha pseudobonds of four contiguous residues. A substitution matrix called CLESUM is available to measure the similarity between any two such letters. The input 3D structures are first converted to sequences of conformational letters. Each string of a fixed length is then taken as the center seed to search other sequences for neighbors of the seed, which are strings similar to the seed. A seed and its neighbors form a center-star, which corresponds to a fragment set of local structural similarity shared by many proteins. The detection of center-stars using CLESUM is extremely efficient. Local similarity is a necessary, but insufficient, condition for structural alignment. Once center-stars are found, the spatial consistency between any two stars are examined to find consistent star duads using atomic coordinates. Consistent duads are later joined to create a core for multiple alignment, which is further polished to produce the final alignment. The utility of CLEMAPS is tested on various protein structure ensembles.

Space and Gender in the Ancient Greek Novel

The plots of the five Greek novels of "love and Adventures" are set in two differentent spaces. First, a macrospace, a gigantic stage which mainly includes Eastern cities of the Roman Empire, where the protagonists live the so-called adventures. And second, the microspaces, depicted in Longus' novel and occasionally in the other novels. The love ideology is clearly conservative, and it has a specific practical purpose among the Hellenized higher classes in the Eastern Empire.

A review of length-weight relationships of fishes from Greek marine waters

This paper presents 649 length-weight relationships gathered from literature pertaining to 83 fish species, belonging to 34 families, throughout Greek marine waters. The value of the slope b ranged from 1.667 for Cepola macrophthalma to 3.707 for Mullus barbatus. The mean value of b was 2.989 (SD=0.339) and did not differ significantly from 3(t-test, p<0.05). The median value of b was 3.058 and 50% of the b values ranged between 2.900 and 3.186.

Biological parameters, body length-weight and length-height relationships for various species in Greek waters

Biological/fisheries parameters (L sub(oo) M, F) are presented for four fish species (Gadiculus argenteus; Gaidropsarus mediterraneous; Symphurus ligulatus; Lepidorhombus boscii) as well as body length-weight and length-height relationships for 11 and 12 fish species, respectively, estimated from trawl samples collected using three different cod-ends (stretched mesh size: 14 mm and 20 mm diamond-shaped and 20 mm square-shaped) during 1993-1994, in the western Aegean and North Euboikos Gulf, Greece. The fisheries paramaters, estimated from length-frequency using the ELEFAN approach and software, are discussed in the light of recent information on the selectivity of the presently used trawl cod-end (14 mm diamond shaped)

Rule-based grapheme-to-phoneme method for the Greek

This paper describes a trainable method for generating letter to sound rules for the Greek language, for producing the pronunciation of out-of-vocabulary words. Several approaches have been adopted over the years for grapheme-to-phoneme conversion, such as hand-seeded rules, finite state transducers, neural networks, HMMs etc, nevertheless it has been proved that the most reliable method is a rule-based one. Our approach is based on a semi-automatically pre-transcribed lexicon, from which we derived rules for automatic transcription. The efficiency and robustness of our method are proved by experiments on out-of-vocabulary words which resulted in over than 98% accuracy on a word-base criterion.

IPLR: An online resource for Greek word-level and sublexical information

We present a new online psycholinguistic resource for Greek based on analyses of written corpora combined with text processing technologies developed at the Institute for Language & Speech Processing (ILSP), Greece. The "ILSP PsychoLinguistic Resource" (IPLR) is a freely accessible service via a dedicated web page, at http://speech.ilsp.gr/iplr. IPLR provides analyses of user-submitted letter strings (words and nonwords) as well as frequency tables for important units and conditions such as syllables, bigrams, and neighbors, calculated over two word lists based on printed text corpora and their phonetic transcription. Online tools allow retrieval of words matching user-specified orthographic or phonetic patterns. All results and processing code (in the Python programming language) are freely available for noncommercial educational or research use. © 2010 Springer Science+Business Media B.V.