Identification and phylogenetic inferences on stocks of sharks affected by the fishing industry off the Northern coast of Brazil

The ongoing decline in abundance and diversity of shark stocks, primarily due to uncontrolled fishery exploitation, is a worldwide problem. An additional problem for the development of conservation and management programmes is the identification of species diversity within a given area, given the morphological similarities among shark species, and the typical disembarkation of processed carcasses which are almost impossible to differentiate. The main aim of the present study was to identify those shark species being exploited off northern Brazil, by using the 12S-16S molecular marker. For this, DNA sequences were obtained from 122 specimens collected on the docks and the fish market in Bragança, in the Brazilian state of Pará. We identified at least 11 species. Three-quarters of the specimens collected were either Carcharhinus porosus or Rhizoprionodon sp, while a notable absence was the daggernose shark, Isogomphodon oxyrhyncus, previously one of the most common species in local catches. The study emphasises the value of molecular techniques for the identification of cryptic shark species, and the potential of the 12S-16S marker as a tool for phylogenetic inferences in a study of elasmobranchs.

Pesca, policromatismo e aspectos sistemáticos de Potamotrygon scobina Garmam, 1913 (Chondrichthyes : Potamotrygonidae) da região da Ilha de Colares - Baía de Marajó - Pará

O presente estudo incluiu espécimes da Família Potamotrygonidae, única dentre os elasmobrânquios em que todos os representantes são exclusivamente de água doce. Este trabalho foi desenvolvido na região estuarina da baía de Marajó, na ilha de Colares, durante os meses de maio, agosto, outubro e dezembro de 2000, dezembro de 2001 e março de 2002. As coletas compreenderam os gêneros Plesiotrygon, Poiamotrygon, Paratrygon e um quarto gênero não descrito, totalizando 723 exemplares capturados. Informações relacionadas à freqüência de ocorrência e biomassa indicaram uma predominância nesta região do gênero Potamotrygon, em especial da espécie P. scobina. O tamanho das raias capturadas foi influenciado pelos aparelhos de pesca. Observações sobre os padrões de coloração dorsal, estrutura de tamanho e sexual da espécie P. scobina foram realizadas. Os resultados da análise estatística multivariada e da genética molecular para P. scobina, mostraram que os morfotipos comumente definidos com base em padrões de coloração dorsal não se referem na realidade a espécies distintas. Três novos padrões de coloração dorsal para sub-adultos / adultos e dois novos padrões para juvenis foram observados em P. scobina. Os caracteres externos analisados para a referida espécie mostraram uma ampla variação em forma, número, tamanho e disposição dessas estruturas, mais evidentes nas classes sub-adulta / adulta. As raias de água doce nesta região são rotineiramente capturadas predominantemente para fins como alimento, medicinais e ornamentais. A conservação das espécies de raias de água doce requer maiores conhecimentos sobre sua biologia e taxonomia para acompanhamento de sua exploração e eventuais medidas de manejo.

A ictiologia na Amazônia brasileira de Diogo Nunes (1538) a Landi (1772): a visão dos viajantes e naturalistas que trataram de sua ictiofauna durante este período

Este trabalho visou reunir e disponibilizar informações sobre a ictiofauna da Amazônia segundo vários escritos do século XVI ao XVII. Consultaram-se, fontes documentais de várias bibliotecas e arquivos, e dos documentos selecionados procedeu-se à identificação taxonômica das espécies neles referidas. Também se fizeram observações com base nas referências textuais e iconográficas disponíveis, de forma a acrescentar informações consideradas de relevância zoológica. Constatou-se que, devido à definição então vigente do conceito de "peixe", um estudo da ictiologia do período precisaria incluir também informações sobre espécies de outros táxons aquáticos que não agnatos, elasmobrânquios e teleósteos. No início do período colonial, a idéia de peixe era generalizada simplesmente como pescado, e não havia muita preocupação em inventariar a ictiofauna do Novo Mundo. Mais tarde, alguns dos visitantes da região puseram-se a descrever e ilustrar a ictiofauna de maneira mais específica: nessa fase em que se dava mais detalhamento às espécies de peixes destacavam-se o texto atribuído ao Fr. Cristóvão de Lisboa (1625- 1631), o códice do arquiteto Antonio Giuseppe Landi (1772) e principalmente o manuscrito do Pe. João Daniel (1758-1776) — o qual se revelou um pioneiro do movimento conservacionista da Amazônia. Os visitantes que vieram à região careciam, no geral, de formação acadêmica específica e, servindo a funções várias alheias à Ciência, não seguiam uma metodologia que se pudesse chamar de científica. Devido ao fato de seus manuscritos não terem sido divulgados ou sequer impressos, por vários motivos, o conhecimento neles produzido não foi cumulativo ou analítico, e não teve influência significativa no desenvolvimento da Ictiologia. Por outro lado, os naturalistas que efetivamente não estiveram na Amazônia puderam trazer uma contribuição de maior impacto, consolidando o conhecimento obtido através principalmente da obra de Georg Marcgrave (1648) e de exemplares coletados nas possessões holandesas da América do Sul, e incluindo-o num grande sistema classificatório que mais tarde despertaria o interesse de outros cientistas em conhecer a ictiofauna amazônica.

Comparative neurocranial morphology of angelsharks from the south-western Atlantic Ocean (Chondrichthyes, Elasmobranchii, Squatinidae): implications for taxonomy and phylogeny

Neurocrania of three species of angelsharks from the south-western Atlantic Ocean, occurring off south-eastern and southern Brazil, are described. A detailed morphological description is provided of the neurocranium of Squatina guggenheim and compared with S. argentina and S. occulta. Despite being generally conservative, the neurocranium of Squatina presents significant differences among these species which aid in their identification, which is otherwise problematical. The main distinctions were found in rostral projections, anterior fontanellae, supraorbital crests, upper and lower postorbital processes, otic capsules, suborbital crests, and pterotic processes. Squatina guggenheim and S. occulta share more neurocranial characters when compared to S. argentina. No basal angle was found, but we confirm the presence of a very much reduced and barely noticeable basioccipital fovea in Squatina; systematic implications within elasmobranchs of these and other features are discussed.

Ahamulina n. gen. (Cestoda: Diphyllidea) from the polkadot catshark, Scyliorhinus besnardi (Carcharhiniformes: Scyliorhinidae), off Brazil

A new genus and species of diphyllidean, Ahamulina catarina n. gen. n. sp., is described from the polkadot catshark, Scyliorhinus besnardi, from Santa Catarina, Brazil. The new genus exhibits apical organ armature that is unique among diphyllideans in the arrangement and shape of the apical hooks as well as in the lack of lateral hooklets. The taxon also exhibits a bipartite cirrus sac. This is the seventh diphyllidean reported from a shark, and the third reported from a catshark suggesting that the dearth of cestode data for these particular sharks belies the true extent of diphyllidean diversity they host.

DNA barcoding taxonomy and diversity of the Mediterranean sharks and rays

Elasmobranchs are an important by-catch of commercial fisheries targeting bony fishes. Fisheries targeting sharks are rare, but usually almost all specimen bycatched are marketed. They risk extinction if current fishing pressure continues (Ferretti et al., 2008). Accurate species identification is critical for the design of sustainable fisheries and appropriate management plans, especially since not all species are equally sensitive to fishing pressure (Walker & Hislop 1998). The identification of species constitutes the first basic step for biodiversity monitoring and conservation (Dayrat B et al., 2005). More recently, mtDNA sequencing has also been used for species identification and its use has become widespread under the DNA Barcode initiative (e.g. Hebert et al. 2003a, 2003b; Ward et al. 2005, 2008a; Moura et al 2008; Steinke et al. 2009). The aims of this work were: 1) identify sharks and skates species using DNA barcode; 2) compare species of different provenance; 3) use DNA barcode for misidentified species. Using DNA barcode 15 species of sharks (Alopias vulpinus, Centrophorus granulosus, Cetorhinus maximus, Dalatias licha, Etmopterus spinax, Galeorhinus galeus, Galeus melastomus, Heptranchias perlo, Hexanchus griseus, Mustelus mustelus, Mustelus punctulatus, Oxynotus centrina, Scyliorhinus canicula Squalus acanthias, Squalus blainville), 1 species of chimaera (Chimaera monstrosa) and 21 species of rays/skayes (Dasyatis centroura, Dasyatis pastinaca, Dasyatis sp., Dipturus nidarosiensis, Dipturus oxyrinchus, Leucoraja circularis, Leucoraja melitensis, Myliobatis aquila, Pteromylaeus bovinus, Pteroplatytrygon violacea, Raja asterias, Raja brachyura, Raja clavata, Raja miraletus, Raja montagui, Raja radula, Raja polystigma, Raja undulata, Rostroraja alba, Torpedo marmorata, Torpedo nobiliana, Torpedo torpedo) was identified.

Paleontological studies of Cretaceous vertebrate fossil beds in the Tataouine Basin (southern Tunisia)

The ‘Continental Intercalaire’ deposits of the Tataouine basin of southern Tunisia preserve one of the most diverse Cretaceous vertebrate fauna from Africa. This research project focuses on a detailed revision of the stratigraphic distribution of mid-Cretaceous fossil beds in the Tataouine Basin and includes the description of four, newly discovered vertebrate tracksites. In the Tataouine region, macro- and microvertebrate remains are recovered from three stratigraphic intervals: the lower Douiret Formation (Barremian), the Chenini (rare) and Oum ed Diab members of the Aïn El Guettar Formation (Albian). A detailed, basin-scale revision of the stratigraphic occurrence of fossil-bearing strata indicates 1. lateral facies variability within the context of a low gradient, circalittoral to coastal-plain environment; 2. multiple and diachronous fossil beds which include elasmobranchs, actinopterygians, sarcopterygians, turtles, crocodyliforms, pterosaurs, and non-avian dinosaurs remains. Four vertebrate tracksites have been discovered in the study area: 1. the Middle Jurassic Beni Ghedir site which preserves approximately 130 tridactyl footprints distributed over an area of 200 square meters, representing the oldest evidence of a dinosaur fauna in Tunisia; 2. the late Albian Chenini tracksite, which includes poorly preserved crocodilian tracks and the dinosaur ichnospecies Apulosauripus federicianus; 3. the Cenomanian Ksar Ayaat locality, where footprints assigned to a pleurodiran turtle are exposed, and 4. the upper Cenomanian Jebel Boulouha site which presents almost 100 well-preserved tridactyl tracks referred to small-sized theropods, fossil bird tracks - ichnogenus Koreanaorins – and tracks referred to a mammalian trackmaker, representing the first report of fossil bird and mammal from the Cretaceous of continental Africa and Tunisia respectively. In addition, data collected from the Tunisian tracksites have been compared with coeval tracksites in Italy and Croatia, showing analogies in morphology and paleoenvironment of dinosaur ichnoassociations, supporting the already hypothesized subaerial connection between these areas during the mid-Cretaceous.

Compilation of scientific results of the OASIS project

Seamounts are of great interest to science, industry and conservation because of their potential role as 'stirring rods' of the oceans, their enhanced productivity, their high local biodiversity, and the growing exploitation of their natural resources. This is accompanied by rising concern about the threats to seamount ecosystems, e.g. through over-fishing and the impact of trawling. OASIS described the functioning characteristics of seamount ecosystems. OASIS' integrated hydrographic, biogeochemical and biological information. Based on two case studies. The scientific results, condensed in conceptual and mass balanced ecosystem models, were applied to outline a model management plan as well as site-specific management plans for the seamounts investigated. OASIS addressed five main objectives: Objective 1: To identify and describe the physical forcing mechanisms effecting seamount systems Objective 2: To assess the origin, quality and dynamics of particulate organic material within the water column and surface sediment at seamounts. Objective 3: To describe aspects of the biodiversity and the ecology of seamount biota, to assess their dynamics and the maintenance of their production. Objective 4: Modelling the trophic ecology of seamount ecosystems. Objective 5: Application of scientific knowledge to practical conservation.